morexGenes - Barley RNA-seq Database

Contig contig_2552365
Source Contig contig_2552365
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2552365 (6256 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_2552365

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_39134	1	2597 bp	MLOC_39134.1	Available	Available	LOC_Os01g23580.1, FRAME:-1, EVALUE:0.0, 13101.m02492 protein inorganic H+ pyrophosphatase, putative, expressed
CDS Structure of MLOC_39134

Contig Sequence (6256 bp)

>contig_2552365 6256 assembly3_WGSMorex_rbca.fasta
GGGATTGGGGGACGAACGGGTCAAGGGATGAGCATGTATACTTGCTGGAGTCGACGCCGA
CCACTGCAGTATCCGTCGTCGCCGCCATCGTACTGGAAATGTTGCAGCCGCCTGATGCCC
TGTCGTCGTGTGCCATCGGCCCCGTCGTCCTCCTAGATCCAGCAGCAAGACAGAGCAACG
CAAAGCGGGCACTTAGGTGTGGGAGACGATCCTGAAACAATGGCTCTTTTTTAGAAAAAA
ATGATTGCGACTGACGTAGAAGCGGGGATGATTGGGTCCGTCAGATCAATGACGGACGAT
TGCTGAGCCGGTGGACAAGGGAGCGCAATCAACCGGTTGAAGGTAACCTTTTTTCTTAAG
AAAATGTCCCTTTCTTGAAAACCAGTAAACTCAGCATTATACGTACTAATTAAGCGATAA
TGTCACAAGGGCAGTGCAGTTTTCGGGGTTGACCTAAGCCTCCACTATTCCACATCAATC
CTAGCATATGATATTCTCAAACCAGACATTCATGTATATCTCCCTGCAATATTTGTATCA
GTTGATTATGAGGCCTCCATGCGCCGCGAAGAATGGCGCGAAGACGAGGGACTCGACGGC
CATGAGCTTGATGAGGATGTTGAGCGACGGGCCAGACGTATCCTTGAGCGGGTCCCCGAT
GGTGTCACCGATCACGGCGGCCTTGTGCGCCTCCGAGCCCTTGGGACCCAGGGACTTGGC
GTGCTCCGACGCACCCGCCTCGATGTACTTCTTGGCGTTGTCCCAGGCTCCCCCGCTGTT
GGAAGCCGATATGGCCACCTGCACGCCGGAGACGAGCGCGCCAGCGAGCAGGCCGGCGAG
CGCGTGGACGCCGAAGAAAGTGCCAACGACGAGCGGCGCCAGCAGCACCAGCGCCCCCGG
GGGCATCATCTCCCTCAGGGACGCGTCCGTCGATATCCTCACGCAGCTGGCGTAGTCCGG
CGTCGCGCGCCCCTCCATCAGCCCCGGGATGGTGCTGAACTGCCGCCGCACCTCCTCCAC
CATCTTCAGCGCGGCGCTGCCCACGCTCTTCATCGTCATCGCCGAGAACCAGTAGGGGAG
CATCCCGCCGGCGAGCATCCCCGCGAACACCTTGGGGCTCAGCACGTTGATCACCGTGAC
GCCCGCGCGGCTCACGAACGCGCCGAACAGCGCCAGCGACACCAGCGCCGCCGAGCCGAT
GGCGAACCCCTTGCCGATCGCCGCGGTGGTGTTCCCCGCGGCATCCAGGGCGTCGGTTCG
TTGCCGGATCCTGCGGCTCATGCCGGCCATCTCTGCGATGCCTCCCGCGTTGTCACTGAT
CGGGCCGTAGGCGTCGATGGCCAGCCCGGTGGCCACTGTGCTGAGCATCCCGAGCGCGGC
GATGGCGATGCCGTAGATTGATGCCAGAGTGAAGCTCACGTAGATTGACACGGCGATGGC
TAACACGGGCACGATCACGGATTTGTAGCCGAGCGCCAGCCCGAAGATGACGTTTGTCGC
CGCGCCGGTCCTGCAAGAGTCGGCCACGTCCCGAACAGGGCTGCCCGCCGCGCGCACCCA
CAAAGTTAATCACTCCGAATCCGAAACATTCATCTCACTGAGACAAACGAAGAAACGAAT
GAAACTAATTACCTGTAAGCATTACTGGTGAAGTACTCCGTGATGAAGCCGATGGCCAGA
CCTGCCCATAACCCAATGGCGACGCAGAAGAACACGTGCCTGCCATTGCCAACGCCGGCC
ATTAGTTACCTTATTAATTTGATCCATCAGCGGCAAAATTTATGCAGGGAAACTCGACGG
CGAGGGCTTACCAGTTCTTGACCTGCTTCTGCTCCCCGAAATCGAACATGGTGAACTTGG
CCGGGAGCGCGGCGAAGGTGACGACGAGGGCTGCGACGGTCATCAGCGCGGTGGAGATGA
CGAGCTGAAGCTTCAGCGCTGGCGCGACCCCGCGGACGGTCTTGACCTTGAAGAAATCGG
TGGCGAAGAGCGTGGTGACCAGGCAGACCACAAGCCCAGCCGAGCTTATCAGCAGGGGGT
AGCACACCGCCGCAAAGTCGTGGTCGGCGCCGAACGACGAGATGGATGCCACGAACAGCG
CCGCGCAGGTGGATTCGGCGTAGGACCCGAACAGGTCGGAGCCCATCCCGGCGATGTCGC
CGACGTTGTCGCCCACATTGTCTGCGATCACCGCGGGGTTCCTCGGGTCGTCCTCGGGGA
TGTTCCGCTCCACCTTCCCGACGAGGTCGGCGCCGACGTCCGCCGCCTTGGTGTAGATGC
CGCCGCCGACCCTCCCGAACAGCGCCATGGACGAGCCGCCGAGGCCATAGCCGGTGATGG
ACTCGTACAGGCCCTCCCAGTCGTCGTGGTAGTACAGCCCGAAGAGCTTGATGGCAACGT
AGAGCACCAGGAGGCCCAGGGACGACAGGAGGAACCCCATGACGGCGCCGGACCGGAACG
CCGTAGCGAAGGCCGCGCCGATGCCGCGCCGCGCCTCCAGTGTGGTTCTCGCGTTGGCGA
ACGTGGCAATCCGCATGCCGAGGAAGCCCGACACCACGGAGGTGACGGCGCCCAGGAGGA
AGGCTATGGTGGTGAACACTGCGTTGGCCAGCGCCGGCTTGCACGTCTTGCCCTTGGTGT
ACTGGCACGGCTGGCTGGCTGTGCTGAACCGGTGCACGGACCCCAGGAAGAGGAAGATGA
CCACGGCGAAGATCACCGTGAATGCCGCGAGGTACTTGTATTGGGTGAAAAGGAACGAGT
TTGCTCCTGTAATATTTGACACGTTAATCGAACTGTTGTCAGGGGCATGCACAGACCAGT
GACGAATTTCAAGTGGAAACTTTTGTCGGTTATATAATCGTCTGTTCCAAAAGGTCTGTA
GGTATATTTAAATGTAACATAATTATTGCACGTCTAAATGATTAAATTAAGCATAAAAAC
GAAAAAAAATACGTAGATAAATCTTTACATAAGATCAATGATTGATATATGATTTAGATA
TGCAATACTTATCTCATATTTAAATGTGTTTTAACAAAACCAGTTTCCAAATGCTATAAA
ATGTTTTGATAGTTCAACTTAAACTGTCAAAACATCTTATGTTTAGAAACATAGGTAGTA
CTTGTATCGAAAGAGTACAAGCATTCTCTTTTATTTTCAACACTTACTCAATTCTAATCT
CAGGCCCATCTACACCTAAACAGAAAATTCTAAAAAAGTAATAGAAAAATAAAAATAAAA
ATCATGGATGTTTGAGTGCGTGAGGTACGTGACAATTTTCAACCCATTTGAACATCGGAG
TAGGTCTCACGAAAAAAAAAAGGATCCTAACAATGCACAAACAATTAACTTTATCACATT
CTAGAATTTTGTCTTCTTTCTAAGAACTACTCAGACATTCAAATGGTCTGAAATTTAACA
TGGACATCACGCATTCAGACATCTTTCTCCACACACAATAATTGATTTTCTTTAATTTAA
TTAGTATTTGTAAAAGTTCCTTTGTTCAATCCCAAGGCTCATTGGGCCTCCGAGCAAAAA
CGCCGCTTTCCAAAGTTGAAATAATTTCTTGAGATTAAAATTTTATCACAAGCATGTGCA
GAAATCTGGTTACACACGAGAACAATCTCTTATTTACCATTAATATGTCAAAACAATTTT
AAAGTTTCTTCGGGTCTTTCCTCTTCATCAGGTAATGCTACACCTATGAAAAACTAGTTT
TAGATTTAACGGACTAACCAACATAGAGAATTAGGATTGGGCACTGGAGGGGAGACCTAC
CCATCCTAATAAAATTCGAAGGAGGGTTGGGGGCGGGGGTGGAGTTTACGCTTATTGCTA
CATCCTACCCACCAAAGTCAACACCTACAACAGTGCACCTGCACAAATAAAGCCTTAGTC
TCGTCTCCATTTGAGATGACACGGTGTCCCCCCGTCTTTTAAGGTATACTCCATCCATTC
AAAAATACTTGACGGAGAAACTTTTCAAGTATTTCTGGACAAAGGGAGTATGTTTTATCA
TTTTTGTTTAAATGGAAAGACAACTCTTACGGGGTTCTAAAACATGCTCCAGTAAGTTGT
ATACTCAACCATTAATAAGAACACGTCATGGAGGCTATTACAAATCGATCAAGTTAATAG
AATGGGATAGGATAAAGGTTGTAGGAATATGGCGTCTCCGGCGGCCCGTCGAACACGTGC
CAGGTCAGGTGCCACTCCTACTTGGTCAAATCTTTGACAGGGCATCTTTTCTTGAACCAG
GAGCAAGTCACAAATCAAGCATGTTTATTTTTCCAACGCCTTGGATTGCCTCAGAGTTGA
CTTGTGGCATATAAATTATGTCAGCACGAAGGTGTTTGAGCTGATCATCTGTTGTTGGTC
AATGGTTCTGACAGTGCCCATTTGCTTAACATCAGGATAAAGTGTTTCCAAAAAAAAGGA
TGAAGTGTTTCGGCTTTTTCGGAGCAAGTTCCATATCCAACACGTTTGTAAAGAACTCTG
GATGACGAGGTTGTGCAGTTGATTGCGTTCGATTAGGGTTGAACATGACCCGTTCACAAA
GTCCAAACCAACAATAGTGTTTCTACAAAAGGTAAATACTACTGTGCATCGAAGCTGACC
GCAAAGAAAAATTATCTGAACTCTGGCATTCTACACCACCGTGCCAAATTCAAGATGTTT
TTTTTCCTACGAGAGTGGCTAATTAATTTACATGAGGGCAGTTATTATCAAACATATTGG
TCTGTATGCATGTGTTCGTGAAAGATCAAATTTTACTACGGTACGCACTTCACACAAAGT
TGGATAAAATTAATCCCCACCGGCAGTAGCGACCCAAAAAATAAAAAAGAGCTGAACAAA
CAATACCTATCAAGAAAAGCATTTGAATTTGAAACCCCGCAGGAGAAACTCAAGATAAGT
ATTGTACTGTACGAAACAAACTCACCGACTGAGATGGCGTTCTGGACCTCGGCGCACCTG
GCCACGGCCGCCGGGCCGTCGCCTCCGTCCTCCTCGTCGTCGCTCTCGCCGCCGCCGCCA
CCGCCCATACGGGCATCCTCACCGTCCTCGTCCTCCGTCCGGAACACTGGCCGGCCGTGT
ACGCCGTTGCCCGCCGGCGCGTAGGCGGACACCTTCACCTTGGCGACAAGGAACCATTGC
CAGAGCGCGAAGGCAATGCCGATCACGGCGCACGCCGGTATGACCGCGTCGGCCGCGGAG
AAGCCCATCGCGCGCGCCCCCGGGAACCAGCGGGAAAAGCAAGACACGGAAAGAGAGAGG
GGGCTTGAAATATGGCAAGTAGTCGGGTAACCGGCAAGGCTGGCGAGATCGAGGGCAACT
ACCTTCCTCCTACGATCCAGTAGGCGGGTATTAAGCAACGGGGTCACCGTTGAGTATTGT
TAAACTTGAGGAGGTCGCGCGGTACGGTTAGCTTAGCAGGGGGGTAACATAGGCCGCTTC
GTCGCCCGGGCATGTGGTGTGTAATAATCTTCAACCCTCGAATAAAAATGACAAAAATAG
CCAAAGTTGCTAGTTTTTTTTCGAGGGGAGCCAAAGTTTTTTTAACATAGACCCAAAGGT
TCGCATAAACGCGCATACATTTATCCTTTTGAACACACACGCACATCCTATCTCTATGAG
CATTTTCAAGAGAATGAGCCGAGAAATCATTTTGAGATTTAGGAAGTCAACGTAGACGTC
TCGTCGTTGACGTGAACGTCTACTCCCACTGAATGTGCATCGCTAGAAATTCTGAAGTAA
ATTGAGGAATAACGCAAGCATCACGACTTGCACCCTGATAGTCTAAGGATACCAGTGCTT
CTCCAACCATCCAATTATAGGTTGGTTCGCAGGGGAGCCCAAGTTGTTAGGGCATCTATA
ACCGGGCGCCTCAAATCCCCATTAAACACCCCCGATCGAATGTTCCGGCCACCGACCGGT
CAAAAGAAATGCAACCCAAATGAACGTCTCAAACGGGTTTCAGACGTTCGGACCGACCAA
CACACTCATGTTCAACCCAAATCTGTAGCGGATATGGGGTGGATCGAGCACGACCGGACG
CGTCTGCCACGTCGGACTCGACAGGCCGACCCCATCGCAGAATGCACCAAATCTACCCGA
CCTACCAATTTCATTTGCTCCGCTCATCTCTTCACTAGTAGAAAAAGGGTCTTTTGTCCC
GGTTCGTAAGGGCCTTCTGTCCCGGTTTCGGAACCGGGACTAAAAGGTCGTTACTAATGC
CCTCGTCCTTTAGTCC