Contig Data
morexGenes
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Map Locations of contig_2552256 (4069 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_2552256

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_39098 1 2436 bp MLOC_39098.1 Available Available LOC_Os02g48010.1, FRAME:+3, EVALUE:0.0, 13102.m05420 protein nuclear matrix constituent protein 1-like, putative, expressed





CDS Structure of MLOC_39098






Contig Sequence (4069 bp)

>contig_2552256 4069 assembly3_WGSMorex_rbca.fasta
AAAAGAAGAAAATTTTAGAAGAACAAAACAATTTGAAACTTACAGAGGAAGAGAGACAAG
AGCACAGCATGCTGACAGCACAACTGAAGAAGGAGATTGATGAGTATAGAATGCGAAGCA
ATTCCCTCTCGGAGGAAACTGAAGATTTGAGGAAGCAGCGGCAGAAATTCGAAGAAGAGT
GGGAGCAGCTTGATGAAAAAAGAGCTCATTTAGAAGAGGAGGCAAAGGTGCTCAAGAATG
ATAAAACAAATCTAGGAAAGTGGCGTCACAATGAAGAGAAGAGATTCAAGGATACACAGG
ATGAAATGGATGCAAAATACAAGGAGCAGCAGGATAGTCTTGCACTCAAGGAAAAAGCTT
TATTGGATGATATAAAACACCAGCGTGAGGAGATTGATGAATTTCTGAAGAGAGAACGTG
CTGATCTTCAGCGTAATTTGCAGCTCCATAGACATGAACTGGAGATGGAGATGGCGAATA
AACTAGCAATTAAGCAGAAGGAACTGGAACAGAAGGAGGATGAGTTAAATAAGAGAAGGG
ATTTTGTAGAAAATGAACTAAGGCATGCTATTGATTTGAACGAGTCCAAGATTCAAAAGA
TAACATTGGAGAAAGAACAGCTGCTGAGGGAAAAAGAAGTTCTAGAGGAGGAGAAGCAAA
AATTGGAAACTGACAAGGCAGACATTAGAAGAGACATTGATAGTCTTCATGCACTCAGCA
AGAGTCTGAAGGATCGCCGAGAAGCATACAACAGGGACAGGAATAACCTCATTGATATGT
TTGAAAAGTACAAGGTGTGCAAAAGCTGTGGGGTTTCTGTTTTTGAGGGCTTTGGTGATC
TATCTCTCAAGGATGATGCTGATATTGACCACCCAAGTTTGGCTGTTGAGGGAGATGGTC
GTTCCCCGAACACTGATAATTTGGCTCAAGACACAGGAACACTTGTTAATTCAGCTGGTC
GTTTCTCACTGTTGAAGAAGTGTTCAAGGCTTTTCAAGTTCTCTCCTAGGACAAAGGCCG
AGCAGTCATCGGACCAGGAAGCAGAAATTAACATTCCTTTTGGTGCGAGATTAGAGGAAG
CATCACCGAGTGAAGCAGATTATGAGCCAACTCCTGTCTATCAGGCAGCAAATAATTCTT
TTGATGCTGAGGGTCTCCCTTCTGACAGTGGAGCAAGGGGGAATGTAGAATTCGAAAGGC
TTGATATAGCTGATGATATCCAAATCGAGTCTTCTGTTGGAGTTGCAGATAATTGTATAG
ATGTTCATGGAACTCAGCCATTTGCTGGTGCTAATGACATGGCAGTTGACACAACAATTG
CCTCTGTGGACCAAAATGGAAAGGACTCAACGGCTGCCCCTGAAGTTGAATTGCAACCTG
AAACATCAAAGCCTCCGAAACGGAAGGGTAAACCAAGAAGGACAAAGTCGGTTCGTGCAG
TGCTTGAAGATGCTAAAGTAGTACTTGGTGGGAATTTTGATGAAAAGAATGATGATCAGG
AAGATTCAGTTACTGTTGGTGGTACACGGAAGAGGCGCTTTGCTGGACCAGAGATCAGTG
AGGAAGATGAAGAAGTTAGTGAAGCACAATCTGAAAGTGTTTCAGTTGGCGGGCAGCCTC
GTAAGAGGAGGCAGCCATCTGGCCCGTTGATGCAAACCACAGGTGAAAAACGCTACAATT
TGAGACGCACTACAGTGTAAGTTAATTGACCTTCCCCTATTTCATTTCTGCTCTGGGTTG
TCTTCCCTTGTATGTATTCCTTGTAAGTTAATATTATCTTTTTGCATCTTGGCGAAGTGC
AAATGCCACAGCAGCAGCCCCTCCACGGGAGAAGAAGAAAGCTGTGAGGAGAGGAAAAAA
GCAGACGGTAGAAACTACCGCTGATGACACGGAAGGAACCTCTAAAGCTGCTGATAGCAA
GAGGACGGGCCCCTCTGAATCAGCTGATGGTGCATCCCAGTTGCAAGAGTTCTCCCAGGT
AATAGAGAGAGAGAGACTCTAGTGCTATGTCAGGTGCATGTGTTTACCTGGGCTAATAAA
AGTGGTAACCATGTCATTGATGTTAGGCTGAAACTGTTGATGCCCATGCTACTGCCGGTG
AGGAGTATGGTGATATTGTTGTGGATGGTGAACAAGGTGAAGATGCGATGCCCATGACAC
CATCAGGAAGTGAGCGTGGGGGCGTTGAAGATGACGACGAGGATGATGATGATGATGATT
CAGAGAGGCGAAACAAATCGATTGGGAAAACGCTATGGTCTTTCTTCACGACATAACAAG
AGGAAGAATAATAATTGCATCTGATTAGGTTGTTTCTAGCGTTTCTTGTTTTGAATTGAC
GATTCTTGGAAATCTAGGTTGGTGTGTTTGGTGATGATGTATCAGTAGATTTTTCTTGCA
CTCATTATGTCAAAGCGTCATGTAATTGAGAATGAGTATATCTTGTAGTAGACAGTCAAG
TCAGTCAGACATAGTTTGATGGATGGCGCTCACAGAATTTAGGTGATGCCCATGTACTCT
ACTCATATTATGGCAGCGATGCCTGTAACAGTCGAGAGTTGTTGAGGTTTGTAATTCTTG
TTCCTTATCCCACGTCCAGATTACTTGCTTTGGTCACATTCTCCACACAGTATTGCGGCA
TCTTGTCACGAGTTGTGGTTGCCTTGTGAGACGAAGGCGTTTGATATTTGTGCAGGATTG
TCAATTCTTTGACCTGGCAATTGATTTTTTGAGTGAGAGCAGCTTGACCTTGTGCATTCT
AAGACCATACTGAGGTCAGCTTGACCCTGTGCATTCTAAGATCATACCGAAGGCCTCTTT
GATTCGCAGGATTCTGAAAACGAAACGAAGGAGCAAAAAAAAATACAGGAATATGATGGC
ATGTCCTACAGTATCCTACAGGATTTGAAAGAATGCTTGATACCACAGAAAATATAAAGA
AATTCCACAAAAACTTTTTGAGCGGATGGATTTCCTTTTTTAAAATATAGTACAAATGAA
TCCTATGAAAAAAATCCTAAGAATGCCCATCCTATGAATCAAATGACCATCAATGGAAAA
AAAATTCCTAAGGGCTCCTTTGATTCAAAGGAATTCTATAGGATTTTTGAAAGATTAAAA
TTCTTAGGATTTTCTCCTACATTGGTCCTTTGATTCGTTGGATTGGATCCCATAGGAATT
TTTCCTATGGAATCTTTTGTACTACATTTTATAGGAAATCTAACATCCAATTTAACCTTT
TTTTACAATTCCTTTGTTTTCCTATGTTATCAAACACTCCTTGCTAATTCTATAGGGTTC
AAATGAACATACCACTCCAACCCTTTACTTTTCCTATTTCCGTGTTTTCAAAATCTTGCA
AATCAAAGAGGCCCTAAGGGTCCAACTTTTTCAGAAATCCTATGCAATTCCTTTGAATCA
AAGGAGCCCTCACTTTTTTGAAAACTAAAGTTGTCATCTAAAAATAAAAAAAAGCACTGA
AATTTAACATCCAAGAAAACAGTTGCCATGCTTGACAGCTAAAGTTGTCGTCCTCGTCTT
ATTAAACTTGTCATCCTTACGTCACTATACTTGTTATAAAAAATGTTTAAAATGGGTCAC
ACGTGTGTCACTTGTCAGAGACCTATGATTTTTGACTTTCAATAGAGTATGAAATTTCAT
TACTTTTTTTTGTGTGCCTTTTTTTTATACTAGGATAATGATAGTGATCAATGCGACTAT
GTAAATAAATGTTTATTAAATTCTACCTGTGAACTATCTATTTTGATGAGAAGTCTGGTT
AGTAAATTATAAGGGGGCTGCTACGCATCCACCGGATGATGTTTAGAAAACATGGTCCAC
CTTGATAGCCGTCTGATCTACATGCGTAGTCGTTCGATCCGCACACGGCGCTTGGGCTGG
GCACTCGGTAATTCCCGAGACAACGCTCGAGTTTCTGAAACAACCGCTTTGTTACAAATT
TTTTTCTTCGCGCACGCTTCGGCTGGACATCCGATAATTCCTGAGACAATGCTCGAGTTT
CTAAAACAATCGTTTTGTTGCAGTTTTTTTTCTTCGCGCGCGCACCCTG