morexGenes - Barley RNA-seq Database

Contig contig_2551897
Source Contig contig_2551897
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2551897 (8034 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2551897

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38969	12	2740 bp	MLOC_38969.11	Available	Available	LOC_Os09g36240.3, FRAME:-1, EVALUE:0.0, 13109.m03564 protein deoxyribodipyrimidine photolyase family protein, expressed
CDS Structure of MLOC_38969

Contig Sequence (8034 bp)

>contig_2551897 8034 assembly3_WGSMorex_rbca.fasta
GGGATCCCTTAGACCACTTTTTTAGGTTGACTGTTTGCGGTATCGGCTAGAGATGCTCTA
AATGAACTATTCCCTCTATATCTAAATAATTGTAGTTAGAAAAAACTAGTCTAGTTTTCT
CCAATTATAATTATTTAGGTACAGAGGAAGTAAGAGTTTGGGCTTGAAATTGCACATGCT
AATAGAACAACACTGGGCTAACTAATGGTACTTTTTTCGTTTAGAGGATTCTTTTTTTCT
TTTTTTTTTGAACTTCGAAACATAGCTCCCACATGGTTTTTGTTGGTTCCCATCGTAACT
TTGTTTCCAGCCATAGGCAAAGCATGCACAATAATACATCGCTTGGCCGATCATTAGGGG
GCAGGAAATTCGTCAGGAGACACAAGCAGCCCGCCAAAAAGGAATTGGTGAGCTGCGAGG
ACCGTAACTTGACATCTTTTGGAGTGGAGGCTATGGGCATGGACCGCTAGTCAGGAGACA
TGAACAGCTTGCCGAAAGGAATGTGGCATGTGCAACTTGACGTTCATCCATCCTTTGGAG
TGGAGGCCATGGGCTGGTCGCGTTGCTGTCAGATTTGGTGATGTCCAGACAGGGCGAAAG
CTTGTGCACACATAGATAAGGTGGGTTGGTTGGGCGATCGTAATCACAGCTGCTTTTGTG
TTTTAACCTCTCTGATGGGGAGCCCTGCACAAAGATTTTGCGGACGGCCACCACCAACTA
AAGCGTACGCATACATGACGAGATACTCATCCCCTTCGACGTTTTTGAGGTGTCACTTCA
GAATTCATGCCACGGCCTTTCAATACTTCCATCAGAAGACAGTGTCTAGCTAGTTTCATG
CGCAAATGTTATTGGTAGATTCATCATTGAAGGGACTTCTCATCATGCTTATAGCATTTG
TAGTTTTGTACTGACCTGTAACTAGAGAATGTCATGATCAAATGCGTAAACTGGAGGCTG
CACTGTCAAAAACGGTAAGTGAAAAGGAACGGAGATCGTACGCACTACAAAGATTCCTTT
GCGATGCAAAGCAAAGCGGAGCAAATCACTGAAGATTGCACATGAAAGCAAAAAAGAGGA
CAGATGAATCACTGCCATGTATCATGAGTGACTCTGATGACTGACATGATATCACTCCGG
ACTCTAAGAACAGTGGAGAGGTTGCTGTCGTGGAGTGCTAATGCTTGGTTCTTTCTCAAC
GGAGAAAGAAGGCGACCAAACTGACAGGGGCATCCCATGATCTTCCAAATGGTGCAGGTC
ACAGGCGATTGGTCGATATTCCGTTCAATGGATCTCGATAAATGCAATAATGATGTAATG
CATGCTCATCATGATGAAACCACGGTCCGTTGCCGAGGAAGACGCCCTTCTGTAGCAAAC
AAGGATGGTTCAGTATGAAAGACTGTAGCATGCACCTGGAGGCGTCAGCGTAAACCAGTT
TCTACATAGCATCAGAAGTACAAGAAAATGACGGATGATGATGATTATAACAATAATAAC
AACAACGACAATAAAAATAAAAATAAAGTAATGAAAATAATAATAGTAATGATGATATGA
TTCCTTGATTAGTAGTTTAGGACGTTTAAACATGATCCTACACGCTTCGATGAAAGCACC
CTATGACAACTGTGATCCTGCCTGACAGAAGTTTTGAACCCAGGTCAAGCACTTGGGAGA
TGGAGAATTCTCTATTCTCCACCATAAAAGAGAAACACTAGTCAATTCCTTTCATGAAAG
TTAAAATAATTCATTTTCCTGGAGGATGGTTCAGTGAGGCAATTACAATCGGCTTTCTGG
GAATTTGGAAGAGGAAAATGAAAGAAAAATCTGTGCAATAAGTTGGCATGCTTATTCATC
AAGTGGACACATTCATTCCATGCCAAATAAAATAAGTGGAGTGCAAGTAAGTACAGATGT
ATTGTGACTAGACATAACTTGCACAATGGATCAAAAGCAAGTATGATTAGGTTGGACATT
ACTTGTACTGTGGGGTTCAAGGTTGATTCTCTGGTCCAGATCCATACTATAATCAAAAGC
AACTTTAGGAATCACTAGTAAGTTCATTGCAAGTGCAAATTGCATGTCACATTCTGTCAA
GTTGCTATGCCTAAGAAAAACACTGATGCTAGTTTTTTTCCCTTTTGATTGCATTTGTCA
AAAGATGGTACAGAACTAATAACTGATGTACATATGTGATTCTGTACAACGTTAGCAATT
CATGTTCTTTTTGTCACTTAAGAGATGACCATATCTGTGAGGTAATGTTTTGTACAGAAT
TGTTGGAAAAAATACATGGGATACATGTGTTATCAAATGGCTCCGACGAGGCGATGATGA
TATTATACAACCAGCCTGACGGAAAGGGTGCCCTGAAAACAAAATGTTACCTAAATTGCC
TTGGACTTCTCCAAAGCTGGCTTAAGTTCAGTCTTGTTCGTTTTCATCCATTCAGACAGT
AAGGAGTTCACTTCATCAGGAACTTCATCGTGCGGAGCATGACCTGTTGTGCTTTATTGT
GAGAACCAAAGCCAAACACGAAATAGAAAGAGGGAGAGGGGAAAGGAGAAGATTCCAAGT
CACCTGCATTTAACTCCCCAATCTGGACCTTCCTGCAATGCTCTCTAAGCATCGAAATGA
ATGACTCAGATTTTACAAGCGGATCTTTCATTCCCTTTTCAAAATTAGAAAATATTAACA
AAATTAGCCTCACAGATGTCAAAAGTCAATACATAGGTATTGGTGTAATAGATACGATGT
CCGTGGATGATGTTAGGCACACACCTGAATAACTAAGATGTTCCCTCCAAAAGAATCGAA
TAGAAAATTAAGAGGAATTGAAAGATTGAAGTTGAATATGCTCTCAATAACTGTTGTCGC
GCCAGGGTCATATGACTGTTTGTTTCTTAAGGAAATAAATGCAGAATACGGTGCACAAAG
TGAAAATTAAGTCTGTAAAATATATACTGTGTGATCCGAGGATACAGCCCTTATAATCTC
ATCCACGAGTGGCTTGTCAACCCGTTCAGTTCTCTACAAATGAAAAGACGGTATTTCTTA
GTAAATATTAACAAATAAGTACTGCTGTAAACTAATATAAGACGTCTTATATTAGTTTAT
AAAGGGAGTATTTAAATATTAAAAATGTAGCACATTTGAAGATACACATACAGTAGGATA
GTATCCCTTGAGAATGCCTCCTACCCTTGACCTCAAAAAGAGCAAAAGGAGGCGTGCCTG
CAACCTTGAAAGCCACGAGGTTCGTCCTTCCTGTACGTAGTTGCATATAACAGCATCCAA
TTAATATATAAAACTGCTGCAGCTCAGATGTTAAAAAGTCCAATATCAAAGATTATGCTT
TTCTTTGTTTATGTCTTCCATGTCATAATTCCCGTTGGACAATGGCTGAATACAAGTATC
AATGATATATATTTGGATCATAAAACTTTTAACCTGAAATATGTTTGCCAACAGAGTTAT
GAATGCTTCCATAACAAAAATAAGAAACAAACATTGCGTCCGAAATTAATTTTCACAATA
GAGCTTTTAGCAGCTAACAATATGTTGATCTACTATACAAGAAGACATTGATGTGGACCA
AACAATATTACCGAGTTCTAATGCTTTTATTTTTTATGTTGTTGTGAGTTTGCAGAGACA
TGAAATGAAAATGAATGAGACCCCCCAACCCCACATAGATATTCAATATCTCACACATTA
ATACAATAAAGAATATGTTTGCTCTCAATTTTCATGGCAAACATATGGTATGTTTAACTG
ATGCAACTAGCACTTCCCATCTTTGACCCATAAATATTGTACAGCATAACATAATTTCAA
TCGAAGTACTTCCATTGAATTCTCGTTGCCTTACTTTACTCAATGGGATGAAGGAGTAAT
TTGGAACAACTGAACCAGCTGAGTTCAGAAGAACAAGAGAATTTGCAAGGGAAGGCCATA
AGCCAGCAGTAATAGCGCAGATATAACCTGAGAATATTACAGCAAGAGAATAACTAAATT
CAGATTATCCCAAACGAAGTTGTTATTGGCTTATTGCCCGCCACCGAGCAATGTTGGAAG
ATTAGTGTGTCAAAGCATACCTCCAATAGAGTTGCCTACAAGATGAACAGGCTCCCTCAC
AACATCAACAATGAAGTCCCTCAGTAATTCTGACCACAGAAGTTCTGAATAGTCAACATT
TGGTTTCTCTGATTTCCCAAAGCCAAGAAGTGTAATTGCCCAAACTCGGTGTCCTTCATC
AGCAATGTTGCTGATATTATCACGAAAGTGCTGCAAGGAAGCTCCAAAGCCATGCACAAG
AAGAACCGCAGGACCTTCATGACCAACAGATGTATACTGCCAATAAAACTTTAAATGAGG
AAATTCCAGGAGGCAGTCTAAACAAAATTGCGTACATCGATAAATTTAGTTGCATAACCG
CAAGACCAAGCAGAAAAAAGATATGCTTAATGTGCACAAGCTATAGAAGCATAAAAAAAG
AACCTAATAAATTTTAAAAGTGAAAAGTATATGTTCATCGGGGATAGGATCATCAAGCAG
TGTGTTCAGTCTATTGATAACACCATGAGACAAGCTTGCTTCTGTGAATAAACTACTCCA
TGTTAGATATATACTGCATACAATTGCAATAATCAATTTAACACGATGCAGGGTTCCACC
AAGACCCAGTGATCACACAGAGCTAACAGATGGGAACCAAGATATACTTTTTTATTAGCT
TTCGAAAGAAAAGAAAATTCTGACTTTGAGAAAAGAGGTACTGCGCTGATGAATAAAAGC
CTTAACTTCATCTAGAAGCATCCTTAGTCTATGTGATACCAATTAGGGATATGTAGAGTG
TTATTACCCACCTGCATAGGTGTCCATTGATAAAGTAAAATTGGCTATGGTAACTCGCAT
CTCAACTGCTAGACCAGAATTGATTGTATATAGATCATGGTGGGTTGCTGATATCACTAG
AAGGTGGAAGGATACAAGTGCAAGTGGGACAATTACAGTGATCCTTTGAAAATTGTTGTT
GACCCCCAGTTGTCGTCTGATTTAATATTCAGTCCGGACAAGGATTGCTGCTTTTCACCA
TCCTATATCAAGATTAGTTTCCTTTTATATGTTGCCCACCAACATGGATAAGGCAATACT
CCCATGTTTGGCAACTCTATTGAATACTAAATGAAAACAAGAGTCGTGATACATACTTGG
ATAAGAGTATGAATCACAACCTCTTGTTTTCATTTAGGTGGGCAACCTACCAAAATTGAT
ACTTACTAATGGATGCTGATGCATTGGAAGCAGAATACATCCGCCTATGTACAAGAGAGG
GTGGAACTGGAAGAGATACAACTTACCTGTATAAGATAACCCTTCCATCTCCAAAACTTT
AAAGGATAATTTCCCTCAATGGATACTTGAGATTTCAATGCCAAGAGCCAGTACCACTTT
AATGTGAACAAATAGATTGTTAGGGGAGTTCAGAAGAGGTGAAAAGGCAGGATAATGAAA
ATAATACAGGGGAATATATCAATTACCTCCAATGAACAGATAGCATCTACTGCTGATGTC
ACTGTAGGGGTTGAATATCCAAACGGTGATAGAAAGCCAGCATTGCGATCTCTCTCATAT
TGAATAGTTTCTTGGTAAGCTCTCCTCCTAGATATGACTCCAAGCTGAATTGCATTACCA
AATAGCGTGCGAAACGAAGCACCATCCCTGGTTTCAGCAAAGCGCACCTTATCATGCAAC
CTGGACAAAGAATATAATTTAACCTGTTATCAGAAATGGATAATAATGATATATACTAAT
GTTAAGACTATATTGCACAAATAACAGGTTGAAACAAGAGGTCATTTCATTGAGAATGGG
TGCTAGGCAACAATTTTTTAATACAACCACAATAATAATGTTGATAACTATGTATTCTGT
AATTTTGGCTTCGAGTGAACAAATCATCTAATGAGAATCTGATTAAATGAAAACAACAGG
GTCATGATACATACTCTTGCCAACTGGCCTTTCCTGTGCCTTCGAGGTATTTCAGGTAAG
CATCTAAAGCATCCAGTGTAATATCTGTTCCACCTCTAACTTCAAGTGAACTTTCCGATG
CAAACATTGAACCTGCTATTTTCCTCCCTGATGCACCAGTACTTGTGGTGATATCTTCTA
TGTTTCCTCCATCGCCGTCATTTAAGGAGACATTACTTTTAATCTTCCTCTGAATGAGGG
CGGCTTTTAGAATAGATCTTGCTGACGTCCTCTTGATAGGAACCCAATTATCTTGTGCCA
TTCTACTCTCTTTCAGGAATACTTTTAGTTCTTCAAGTGTGGGTAGAGAACCTGAACAGG
AAACTGTTGTAATATCTAAATGGACACACTGATATGTTCAAGGAAACATATAATTATCAG
CCAAAACGAATGGAATTGAAGTGCACCTGTGTCTATCTCCACATTTAGAGTAGGAAGAGT
GGGGGTAGGGAGAGCTGTAGTTGTCGAGAATTTGTCATTCAAAAATTGGTTGCGTGATGT
TGACAGTTGCCTCAAACTCTGGTGGAATGATCACTTCAGCATGCCATACATAATCAAGTT
GCTATATGATAATAAAGAGAATTAACACTTGAGATATCAAACTTTAACTACCTTATAGTC
ATACAATGGGGCACTCCAGAACTTTATCTCAGGAGGGTTTCCCCGTGTGAACGATCCATT
AGACAAAGAAGATTCAACATTGGCTAAAACACTGCACACACTGTGTTCAACTTCCTCTTC
TGTATAAATGACACCCGCTTGTACCTGTTATACTCCACCAATGCATGCAATCAGGAGATC
CGGATATGTTAGGAAGGTATGCATATACTCTTAAACCTCAATTCTCAACATGAACCTTGC
ATAGCGACCTCATTTGCGAGTTTCAAAACAGCATCTTCAGCATTTCCCAAGCCTATGAGC
AGATCAGACCGTTGAGACTTCAACGCCAACTTAAGGTCTTTCAAAGCAAAGAGTAGCAGT
TCCAGCCTCGTGTCTGAATAACCTGCAAAGGATTAAAGAGTTGATACTAACTGTCTAAAT
GTTTTTGAAACTAAGCCAGGAGTAAAACTGCCTGCTAAAATCCATTAGATGTGATTTGTC
AAATGTCATTTAATGATTTCTGTTGAACCATGTTTAGACGAGTCAGGGTTGGCTTACGCA
TGTTCATTAAGAGGTATATGATTCTAGCATTACAGAAGCAGAGACAGTGTCAGTGACTTA
GTTTACAGCACCCAAGTCTCATTCTTCGGGCCTTACTGGTCTGACAGGCAGGTGTGGTAC
ACAATTTGGCAACGGTAACCTACATACATGTGGGGATTCAGATGGAGTCACACTATCCTG
AGAAGCACCAATTGCGATGTGGTATGAAGAACTGGTTTCTACTCCCTCTGTCCCAAAATA
AGTGTCGCAAATTTATAACTAAATAGTATAAATTTTGTACTAAGTGAATGACATTTATTT
TGGGACGGAGGGAGGGAGTATTTAATAGTGTCTATGGCAAATGGCAAACTGTGTTTTAAG
CCAGCAGGCTAATGGTAATGAGGCCAACATCTGACAGCTCAATTTTACAACGGACGCCTT
GCTCGGTGTGATTTGGCGTTAGTTTGCTTTGCATATCTACAGAACCACCAAACCAAGCAT
CGAAGGCACACTAGCTTTCGCATCAACGTTGCTGGAGCACAACGATCCAAGCACTTGAGG
CGTGCGAACACGGCCGAGAATCCCTACGGTGAGGCATTGTACCGAACACGCCCCGTGCAA
CTACCGATCCCCATTCCTCAACCCCAGGCCGAACGTCGCACCTCGACGCTAGAACCGAGC
AGCAACTCACCGGCGAGGATGCGGCTGTCGAAGACGTAGAGCGGCACGACGGGGCGGCGG
GGCTCGGCGCAGGCGGCGACGAGGCCCGGGTGGTCGTCGACGCGGAGGTCATGCTTGAAC
CAGACCACCGCCGCGCCCCCGTCCCTCACGGCGCTGCAGGAGACGACGAGGCGG