morexGenes - Barley RNA-seq Database

Contig contig_2551817

Source Contig contig_2551817

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2551817 (1701 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_2551817

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38930	1	823 bp	MLOC_38930.1	Available	Available	LOC_Os06g47600.1, FRAME:+3, EVALUE:3e-80, 13106.m05056 protein thaumatin family domain containing protein, expressed

CDS Structure of MLOC_38930

Contig Sequence (1701 bp)

>contig_2551817 1701 assembly3_WGSMorex_rbca.fasta
GCCGGCGGCGAGCCCCCGGCCACGCTGGCCGAGATCACGCTGGGCGCGTCCGCCTCCGCG
CTCGACTTCTACGACGTGAGCCTCGTGGACGGCTACAACGTGGCCATCGACATGCGGCCC
TACCACGGCTCCGGCGCCAACTGCCTCCCCGCCGGCTGCGTCAGCGACCTCAACAGCGTC
TGCCCAGCCGGGCTCGCCGTCCGCGGCGGCAACAGGGTCGTCGGGTGCCGCAGCGCGTGC
GCGGCGTTCGGGAGCGCCGAGTACTGCTGCACGGGGCAGTTCGGCGGGCCGCAGCAGTGC
AAGCCGACGACCTACTCGCGGCTGTTCAAGCGGGCATGCCCCAAGGCGTATTCGTATGCT
TACGACGACAAGACCTCCATCCTCACCTGCGCCGCCGGCACCTCCTACGTCGTCACCTTC
TGCCCCCACCGCCGTTAGACCAGACCACGCCGCCACGGATCTAGACCCGAAAACGGTGGT
AGCAGTACTTATCTTGTTTCAGTTGAGGAGCCGGTGCTCGCCTTGGGTGCGTGGCGTTGT
TGCTGCGTTGTTCTTTGGTTCTTGCTGTCGTTGGATCGATGATAATAACACTAGTAGTGG
TAGCACCAAGGAAGTGAACCAGTGATGGTTTGTGGTAGGCCTGGATGAGTATAATGGCAG
TATGGTATGGTATAATGGCAGTATATGCAGATCGAACTAGTTATTATATTTTTCATTTGA
ACTTCGCGATTGGTTCCGTCTTCTACTCGTGCGTTGCTTTGCTTCTGTACCTCTTGATTT
TTTTTGCTTCTTCAGATCTGAATGTTTGAACATTTTCACCGGGTACTCCTACTTTAAAAA
GTGCTCTTCAGATCTGAACATTTTCACCAGGTGGGCAGTGCTCTCTGGGTGAAGACGCAT
GTCGTCTGGTGCAGTGCGCCGCATTAGCTAGGGAGGCAGCTTTTCTCACGGAACATCATC
ATAATCGAGGACGTGAAGGATTCGAGGCACCCACTCCAGTTTGTACTCGGGCGCAACCGA
GGCGCTGGACCGAGCAAAGCCTCGTCGGATTCCGCAGGCGTATAAATTTCTGAAGAAAGG
CCGACTCCACTTCTGAAGAAAGCCCGACTCCACCGTATTTTGTCCGGCCCCGTCGGTTTG
ACGTAAAATGAACAAACACGTCGGTCCAACGCAAGACAGTTCGAACCCATCCTGTCCGTT
TTATGTCCGACACGATCCATTTCAAACGCAAATTTGCATGAGATTTGAGTCGCGGTGGAC
ATCAAACGGACGTGCACTCGTCCGCGTCGGCGACGCGTGACGGGCGGCCACCAACCTTCC
ACCCACGAGCATCAATGCGCACGAGCGGTCAGACCCGCCTGTCATCCGCCCAGGGGACGG
TAACGGTCCTTTTTAAGTGAGGAAGCCATGGACCGGTCGTTCACACTGCCTATCGCCACC
CTGCGGCCTCCTCAAAACCCAACAATTCCCTCCGCGAACCCTAGCCTCCTTCTCGAACTC
GGCGGCCACCGCAGCCATGGGCATGTCGAACTACGGCTGCAAGGGCACCCACGACCGCAA
GGCTGGCTCCTCGTCGGGACGCCACCGCGGTTCCATCAAGGAGGAGGCCGCATCGCCACC
GCGCCAGGCCGTGGCTCCCTTCTCCATCGCTCCTAGGCCCGCCGGCCCTCGCGACCGGCA
GTACCTCATCGTTGAGGTATG