Map Locations of contig_2551748 (4939 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_2551748

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38911 1 386 bp AK363133 Not available Available None
MLOC_38910 2 2048 bp AK360183 Available Available None





CDS Structure of MLOC_38911






CDS Structure of MLOC_38910






Contig Sequence (4939 bp)

>contig_2551748 4939 assembly3_WGSMorex_rbca.fasta
GCCGCCTCCCGCCCGCGCGCGCGCACGCCAACTGCTCGACGGAATGCGGCGCCGACCAGA
GACACAAGCTCGCCCGCTTTCTCTCCACATTAATTCCGGCCGCGGGCTTTTGCTGCCGCG
TCGAGCGGCGGAGCTAACGACAACCCGCCCATTCCCAGATGCACAATCATCATCTGCCCA
GCTCTGCCCACCTTTTATTTATTTATTTATTTTTTGGCTTTTCCAACAATTGCCGTCTCG
GTTCCTCTCCTGGATCCACTCGTCTGATCCCGTGCCGGCTGCAGATTCTGGGCGGAGATG
GAGGCCGTGCTGCAGGCCGGAGACGCCGCGAACTGGGTCTACAAGGGAGAGGGCGCCGCG
AATCTCATCCTCAGCTACACCGGCTCCTCCCCTTCCATGGTATGCTCTGCTCTGCTCTGC
TCTGAGCAGAGCAGAGGCTCGTTCCGCTGTGCTGTTGGGTAGTACTTAGCTTTCATCATG
CATTTACTGCCGGATTCTGGACTTATATATATGCTGCATGAACGGATGCCTTTGTACCTG
CCTAGATTGGTGTACCGATCGGGGAAGTTGGTGGCCTAGAATCAGAGATATCTTTTAAAA
TCAAGCGCATAGGACTCACTGCAGCAATCAATAAATTATGTGTAGGGCTGCCCTCTTAAT
TTAGGCATCTGGTTTCACTTTATATTATTGAAACATGAGAGCTGGGGTCAGGTTTAGCTC
TTGTTGTTTAGCCATTTCTAACCAGGAAACAGCCATCCAATCTCTATATGGTTCCCATGA
TTTCCCATTTTGCTATCATAAGCACATTCTTCGCTGTATAATAAATTTAGAGGGGATAAA
CTCTGCTGATCTACCTTTGGTTTGCACACAGCTTGGCAAGGTACTGCGAGCCAAGAAGGT
CCTAAATGACAAGGCACAACCAGCACCAAACTGTGTAAACTTCTCAACCTACGAGCAGCT
CGTGTGGGGTCAGATCCCAGAATTGGTCGAGTCTGTCAAGCAAGGTTCTGTGGCACAAGC
CTATGCAGTACATGTCATGAGCCCACATCTGGGGCACGATCATGTCGATGGTGGGGTACG
GTTTATATTCCACCCAATTATGTTTGTTGCACTGATATGTTTGTCAGAAATATATTATCA
ATCTTTTTGTAACTCTAAATCATGTGTTCTTCTAGAAACAGAATGTCCTAATATTAGTAT
CACTCCTGGTTAATCTGATCTATAAGGACAGTATGGTACTCTATCAATCAGTGTGCAACC
TATTGAATTTGGATAAAGATATGCTGTCATATTCGTTAAGTTCTTTCAAAAGGCATTATT
CTTTGGGTTCGCTTCACTATATGCCAAATAATGTCATTTTTTTGTAGTGCAGGTTCGTGT
CCCTGTGTCTAAGGATTTTCTGGAGATTGTTGGAAAGAATGTGCTCAGTGCCCGTCCTTC
TTGGCGAGTGAATGCAAGCGCAATTGATACCAGCGCTGATTCTGCACTTCTAATTTCTGA
CCACTCCCTATTTTCTGGTAAAGTTTTGGAACCTAGACCTTAGTTTGACACTGCATCCCA
ACTCTTCTGAGCATGACTCAAAGCTTTCAAAGCTTAGGAAAGTCAAACTTTTCCTCTTAA
TGCACCAAACTTTGGATGGAATGTTTGTAGCATGACTACTTGCTTTCAAGTTCACGATTC
ATAAGGCTTGCAAAAATAGCTTGCAATCCATGGTGGCTTAGGGATATAGTACTACTTGCT
ACAGACAAATGGTAGGATCAAGATACATGCCCAACCTCCAATGTAACAGTACTGTTTGAT
GCCAAGGTTACACTTCCTTTGAATCTTGGGATGTGTTTGCACTGCTACATATACTATGGT
TTTTCCTAGCTCTATTAATCTGAAAGATACGTAGAAAATTACTTTGCTTGTCTTTTACAG
ATTTGTAGTGTAGATACGGTCTAGTTTCACTGCAAAAGCTTTGGCTTCTGTCAGGAAAGG
ATAGTTGGTCCAGTTATTGTAACCTGTATCATGATGAATGACCCAGTAGTGGTTTCGATT
GAGTTTGTGCTAGGCTATTAAGAACTCTATGGTAGGTTTCCTGCATTTAAATTTGTACTT
TCTTACACAAAATTTTCTGATCACAGGAAAGCCTAGAGGTAGCAGTTGTATTGCAGTGGA
GATAAAGGTACATTCGAAGCTTCCTTCTTATTATTAGTATTTATTTTGACATGTATTTCC
AGTTGACATGATTTCCACATGCTTCACCATCCAGGCCAAATGTGGGTTTCTTCCATCATC
AGAATATATATCAAGGGAAAATGCTATTAAGAAACAAGTAACACGGTACAAGATGCATCA
ACACCTCAAATTTCATCAAGGGCAGGTATGTCAGTCTTAAGCAACAGATTTCAACCTAAT
ATAGCTATGTTTGATTGATCATATAGAATCCTAGGCTACTCTTTAGCTCACTGAAAGACA
GAGTAGTCTTTTGGCAAAATACAAACCTGTCTTAATGATATTTGTTTTGAATCAAAATAT
CTTCAAGCATTCTTGTTTATTTAGGCATTCAGGGTTAACATTCTTGCAATACTGCAGTAT
CTTTATTTGTTCTTGAAATCAGTTTGTTTCCCAACATATTTTTTGAACAAATTTCAGATA
TCGAAGACAAGTGAATACGACCCCCTTGATCTATTTTCGGGGTCAAAAGAAAGAATACGC
ACGGCCATCAAGTCATTTTTCTCGACTCCTCAGAACAACTTCAGGATTTTTGTGAATGGC
TCCTTAGGTTTTGGTGGCATGGGAGGTGGTGCTGATAAGGTCCTTGCTAATGAGACAGAG
AAGTGTCTTGAAGATCTCAGGAAGGTTAGTGGCCTACAACTATCCGACTTCATTGAGCTC
CTGTCAGAGGCAATATCTAAATCTGGAGTATTGGACAAACTTTTGGCCACTCAAAAACTG
GATGATCATGACATCGAAGGGGCAATTCATCTGTATTACAACATCATCTCTCAGCCTTGT
GTGGTCTGCAAAAATATAACTGATGCCGAGCTGTTGCACAAGTACTCTGTGTTGCATTCT
CTTCCTTTGGACAAGAGCTGTAAGATTGTGAGGGAGTTTCTCATTTCTGCCACTGCAAAG
GACTGTAGCCTCATGATGTGCTTCCGGCCAAGAGAGTGTGAAAGAGCAGATTCCGAGTAT
GATTCAGTATTTCTCCAGTCAGTGAACCGAGCCTATGATTACAAGGTATGTTACCGCGAA
ATGTGTTCCTGTTACCTTTGTCTTGTATTTTTTCAGCAACTCATGTACTTAACTACTTTT
ATGGTTTACTGCTGAACTACTGATTCTGCTTCTGAGTTTGTTTACTTATCGCATATACCT
TCCGCAGGCGTATTTTGTTGATCTCGATGTGAAACCTCTGGATAAGATGGAACATTATTT
TAAACTGGACCAAAAGATCGTCAATTTCTACACTAAAAGCGGTGAGGTCGGGCGAGCTCC
TTGTGATGCTCCAAAGGGGGGCGGCACCAGTGATGACACCAAGGTTGTGCAACAACATTG
AGGAGCCCCTTCAAGCCTCTGGACCAGAAACGGCATAGGAGACTGGTCCCTGTTGTTTCA
TCTCGTGGCTGTTGTTGTAACCTTGTAAGTACAGCTCCGATGTCGAGGAGCTCCTCCCTT
TGGTCGGGAAAAAAATGCACAGCAGATCGGTCGCTGCTGTTTGTTGTCGCTGTTACTGTA
GCTTTATGAGTAGTAGTACAGCATGTATACTACCTCCCGGGTGGCTCGTCGCGGCAGAAA
ATACACCAGGATTTAGAATTGGACAACACTTTTAACAGTGGCGGACACATGCTGTAATGT
TTGCAGCAGAAACGAGGGCTCAGGTTTGCATTGCAGGCTACGGTGTTTTATCTGTACTCT
GCCCTGATGTGCTCACACATGTCACCAGTCCCCTCCGTTCCAGTAAAATCTGCTGACTTG
CCGATTGTTTCACTTGTCCCTCTTGAATTTGTGATTGCCTCTCCCGTCTAAACTGCTTAT
GGTCTCTAGGCGACAGTGTCGTTTGTACGCATCGTGAACTCATGATTTGCTTCCGATGAT
GTCGGATCTTTTCAGCAGTATCTGAATTGTAGAATGCTCCAGGAATTGAGCACCAAGACT
GCTGTGCTGTGCCAACAACCCGGCCTCAAGCATGAAGCCATACGTACAGGTTAGAGTGGT
TCCAACACCCAGCGACCACACATCAAACACACACAAAGGAAACGAAGACTTCATGTTTGC
CACGACAAAAGAACAGTTGAGTACGTTGTGCCACGTAAAATCAGCTGTCCCGATCCTGGC
TCGTGTGACGCTTCCCCTGAAAACCTGGTGAAAAAGGCGAATGGCGGCCTAGAATATCTA
GACTCGGTAGCCAGTGGACTTCCCGTTCGGGGAGGTTGAGCGACCGCATCGGGGTCCCTA
ACCACCTGAAACCCAAACGGGGCACCACCGCTGTCTGCCTGTAACTCTGTATATAGCCCG
GGACCGGACATCAGCAGAGCCACCGGCCGGCCCCTTGTCGTTGTCGTGGTGGAGGCCGGA
ACGATCGATCGACCACGCGACACCGTTCATGTCGAAGAGGACGGTGCTGCGGGTGGACAC
CTCCTGCGCCAAGTGCAAGCGCAAGGTCCTCCTCGCCGTCTCCGGCCTCCAAGGTACGTA
CGTTCGGTCCGGACCGCACGACGACCAAACCGGCAACGACGCCATGCATTTCTTGCTTGG
TTAACCGTTCCTCTAATAATCCTCTTACGTGCCCTGCAGGCGTGGACAAGATCGAGGTCG
ACTCGGAGAAGGGCACGATGACGGTCACCGGCGGCGTCGACCCGGTGCACGTGGTGGAGG
CCACCAGGAGGAAGGCCGGGAAGCGCGCCGACGTCCCCGCCACCGGCACCCCCACCCCCC
CCCCCCCCCAGCCCCCGCC