morexGenes - Barley RNA-seq Database

Contig contig_2551216
Source Contig contig_2551216
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2551216 (6749 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_2551216

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38731	1	1469 bp	AK249843.1	Not available	Available	None
MLOC_38732	1	123 bp	None	Available	Available	None
CDS Structure of MLOC_38731

CDS Structure of MLOC_38732

Contig Sequence (6749 bp)

>contig_2551216 6749 assembly3_WGSMorex_rbca.fasta
GAGAGTGAAGATTGTGTGTTTTCACGGGGAAAAAATAAAAACCATATAGGGGCCCTCCGT
TAAACTGTTGTATATGTTTGCTATAGAGATGTTTTAGAGACGGGGTGGGCCCCCGGGGGA
AAGGGGGGGGGGGGGGTGCAAAGCGAATGGTTGAGACTGAATTTCAAGTCCTACGTATTT
GGCCCTGTTTGAATTCTAGGGTTAGAGTTAGAGTGGGTTAGATTTGAGCCATCTAACCCT
CAAAGATCAAAACANNNNNGTTAGAGTTGGTTAGATGTATCTAACCCACCCAAAAACTCT
AACCCATCCAATAGGTGTTTTTTTGGGTTAGAGTAGGTGGGGTCCAGGAAAAGAGAGAGG
TCCAAAGTAGCCAAATAATTAAGAAAGAGCATTTATTGTCCTCTAACCCTCCCATCCAAA
CACCTTTAGAGTTAGAGTTAGTTCAGGTTAGTTCAAGGGTTAGAATTTAACTCTAACTCT
AATTAGGTTAGAGTATCCAAACAGGGCTTTGTCCTTTTCTTTGCTTTGTCATTATGAACG
TAGGCATGCATGCAGCTTTGCATGTAGAGAGAGGCGACGTGTGTCTTTGGTCCCACTTAT
GTGTCGCTTCTGCCTTCTGGGCGTGATGATTGATGAAGATAGAGGGCGCTCTGGGTGGAG
TCATTCCTAGACATATGTCGGCAGCAGTCTCGTGTTGACAGCGCTCCGCTGGCAGCAGTA
CCAGTCTCGTGGAGTATAACTTAAGTATAGATCGAACAGAAGCCGACTTGTAGGGAAGGT
CTCATGGGCGTATGGCATTTTTGATGCCGCTGCGATTTGTACGGAGGTTTACTCGGACTT
TGGGGGTTGTGGTTAAACAAAAATAGGTCCACTAGCGGTGAATTGGAATTTCAAAATTTG
AGAAATCTATACAAATTTAATGTCTGATATAGATCTATCAGATGCCGAGCCTCCGGAAGA
TGTGATATTAATCTCCCTGGAGGTACTAGGACATTGTGCAAGTGGTGGAAGAACCTAGAA
ATTGACGGAAGAACCCATATATAACGGTGTGGAAATTGGGGTTAGAAATGAGGAAAAATC
ATGCTCCTTGCCACGGCCCTTAGGACCTATTTATACGAGAGGGGGGCGTAGAGAGGAAGT
GATGTTACATTTTACCTTAAGTGTATAGTATGATATATATACGTTGCATGTTTGGGTATC
CAATGGGACAACAAAATGTTTTCATAGTAGACCACGATTCCCCCTGAAAAGTAGGATAAA
CCTTCAACCTCTCCATTAGATGCACCCAGCCATATATTTATTTATTTATTATTGAAAACA
ATGCCAAGCTAAGTCAAGTATTCATGCTGAAGAAATCGGCTTACAAAAATGAAAAGAAAA
TCCCGAGGCCATCCACAAAGGACATGCCTCGCTGCCACATTTCCAAAATACTAAAACAAA
TCATGTGATGTTGAACAACTCCACTCGTCGAGTGACATGAGAGCTAGCAAAGGGTGCAAC
GCTCTAAGACAATGCCTTCACAAGGGAATCGCCGCTCGCACGTTTGATATTGGCTTGTCC
AACCTATACCATACCAGACCAGTGGATATAGCCCTAGAATTTTTGAACCAACACCTTCAA
CATGGTAACAACATGCATACGTCGATGCTACTGGATCAAGCTGAAAGGCTAGATCATCGG
TTTTCACGCGGAGAGAATACAACCATGATATCGGCCTCCATAATCGCCATGGACCACTCT
ATCAGCCTAAACACATAGAACGAGCGGGCCAAAGGAGATATTAGCGGAAGGAATACACCA
TCACATCACCACCGCATGGACGTCTCTTCGAGGATTGTCGTGCGCTCAATGACAATGCCT
AACAACCGCCACGGTTAGATGGACCTCCCAAATCCATTGCCCTCTAGGGCTTTGATATGG
CTCTCGGTTGAGTCAGAAGCGGTCTTGGAGGTGCTCACTCGTAATGGTGAGGGTGAGGAA
CACTGCACCTCGCACGACATCCTCATTAAACTGAGGAAATTCTCGGTGCATCGTCGACAT
CATCGAGCTACACTACCTCGTGAATGTTGCCGCATCCGACCCACATGCAAGAGTGCAAGA
TCCCTGTGTCCCGGTTGACGGGCGCCGATCGCACAAACAAGGGAGGGAGCATCCCTGACA
CACTTGGTGAGAGCCCAACGCTAGCACAATGAACGCAGCGACATCGGTGGAGTGGGTAGG
GCTAGTGGCGTGTGTGCGTCAGGTACACAGGTTAGGTGTCTCCCGGCACATCATAGATCT
CATTGGCAAGCAACTTTAGTGTATTCTAGCTTCCATCGAAAGGCCTATAACGTACAAAGA
ACTAGAGACATGATTTACCCAGGCACCCAAGATGGGTAAAAGCCCTACGTCCTGCCTTTT
ATGCTTCTACTATATCTCTAGAGAGTGCAGGGTTATGTAAACCTATTCTAGATTTTTTGG
GTTCTAGATGGGATACAAACTACGGTACGCAATGTTGGTGTGCTCCTATCTGGTTTTGTA
GTGAGTTCTTCTCGTCTTGAAGTTTGGGTGTAGATTGTAAGACACATTATCTCTCTTTCT
TACACCCCCCTTTGTTATATCGTCTTTCTATGATGGGCGGAGTCTTGCCCATTTCCGAGT
TGGAGTGAGGGAGGGCCTCCTGCTTAAGGAAACATATCTTGAGTCAATACGGTTGCTGGA
TTCCAATTGAAAGATTCCAATCATGTGTGAGTCCTATACTCTTTGGATTAATTAAGGTGC
GAGCATTCTAGAAGATGACCCAGACTTCGTATAGGATGTGACATGCGAGTATTCATAATT
ATTTTCCTATACTCACCATCACCCCCGATTTTAAAACTGTTCTAGGATTATTTCGGTCAA
CTCCCCTGGGAAATGTTGCAAAATGTACCTAGGAAAATCAAAGTGATTCTAGTTGAGATT
GCCAGGCTCACAAAGGATAACAAGCTGTCAAATAATGCTTGATGGCATGTGGTGCTTCAC
GGAAATAATGCTTGATGGCATGTGGTGCTTCAACTATGTAGTGTGTTGTCGTGTGTTTAC
CATTTATCGCAAAGACTATGGAATAGAAAAGTTTACAAACGTTTCCGTTTCAATATTCCA
AATGTGGTGGTTCAATTATAGTGGTAATTTGCGGACTCAGATGCTTGATCATCAATGTAC
AAATAATGCAGGTACATATACTTGGCAGACTTGATGCACTTCATGAGGCAGGAGGAAGCC
ATCAAAGCAATGGATCTTTTTGAAGGAGGACAAGAGTATAATAGGATCAGCAAGAGGTCT
CTCAAGAACTGGATGGTAATGATCTTACTACCTTAGTAGCTAAGTTGCAATAAGGAATTG
TAATTGACTTCTATCTTTTGAAGATGCCTTTCCTAACAATGTTATATGGATTCTTCTGTA
GGTGAATGCATTTAGGGAGCGCAAAGCCCTTGCCTTAACACTTAATGATACAAAAATTGC
AGTATCCAAGCTCAACCAGATGACTAATGTTGTTGGTGGCATCATCGTATTTGTTCTCTG
GCTTCTTATTCTTGGCATAGCGACAACAAATTTCCTTGTCTTCCTCAGTTCACCGTTTTT
GGTGGCAATTATTGTATTTGGAGACACTTTAAAGGCAATTTTTGAGGCAATTGTTTTCTT
ATTTGTGATGCATCCTTTTGATGTTGGAGACCGCTGTGAAATAGAGGAAGTTCAGGTGTG
GTAATCTCTTTCTTACTCCTTGCTTATTGAATTTAATATTGGCTTGCAATTATTTACTGA
AGTTTTAACCACCTGAATTTCAGGTTGTTGTCGAGGAAATGAATATCTTGACAACAGTGT
TTCTCCGATATGACAACCTGAAGATATATTATCCAAACAATGTACTGGCCTCCATACCGA
TTAAGAATTTTTACAGGAGTCCTGATATGGGAGATGGAATTGATTTCTATATTCACGTTG
CCACACCGGTAGCGAAACTAGCACTAATGAAGGAAAGAATACTACGGTACACATTAATAC
CTTTTATCCTATGGTTTGATCAAATATGATTTGTTAACAACTCAACTATGCGCATGTTGA
CAATGAACCATAACGTAATGTTGGAAGTTTCCCTGTGTTTCTTCCTCGTGTAGTTTAGTA
TACCATGTTAAACTAACCAATTTTTTCGCTTGTGACTCCAGTTACATCAACAACAAGAAA
GAGCATTGGTACCCGGGGGCGATGGTCATCCTCCGAGATGTAGATGAGACCAACAAGCTA
AAAATATCCATATGGCTCTGTCACACGCTCAACTTCCAGGACATGGGGATGAGGTATGTG
AGGAGGGAGCTGGTGCTCCAGGAGATGATCAAAGTCCTCAAGGACCTCGACATTGAGTAT
CGGATGCTACCACTCGATGTGAACGTGCGGAATGCGCCTCCTATTTTATCCACAAGGATG
CCAACAACATGGAATTATTGCTGAAGTAGTTGATGTTCACGGGGCATTTCCTATCCAGTT
CGAGCGGTGAGAGCTACAAGAGCCCTTGCTAGCAACAGGCAGGTAGGTGATGATATGAGC
TGTTAGCGTATCTAAGGCACATCACTTGGTTTGGTGTGTAATTAGTGTTGTGTAGTATGT
CAGCTTTGCAATAGAATAATTGATCAATTTTCAATATTTCCCAAGCATGTACATATAGAA
GTCGCGCGCATGTGTGTATGCGTGCGGTTGTGTGCTTCCGTTCAAGGTGGGAACCGAGCT
TGGTCGGGGCTGGCATGGCGCGAGCCCGATGTACCTTGGGCTGTATCCGTGCGATATCAG
TCCGGCCTGACCAGCTCCCTAGTGCCATGCTAGCAAAGAATGCCTCGGACGTGAACCAAG
TCTAGCACATTGGCGCGCTTGTGTTGGGCTGGCCCAGGAAAGGTCCGCCTATCCGTCCTT
GATGTTGCTACATAGTGAGTCACTGTTCCCAGTGATGTTTTATTCTCCACCATGCTTGAG
GATCATGGGCCCCATCAAGAGGTGGTTTGGAAGGGAGCCAACATGTATGATGGGCAACTT
CCTAGATTTCCTTGGATACAAGTTCGATAATGATGGGCAACACCGGCCACCCATGTGATG
TCAGGGGTGCCGCTAGCTTCTTAAGATGGTGCCATCGGTTAGAAAAATAACATAGAGATG
ATTTGATGCCATAGGTAGCCCCTTGGGCATTGTGTTCCATTTATACTAGTACATTGTACA
ACTTTGAATCTAGACATGATCATTTGGGATCAATCTAATGGATTTTACAATATATCTAAT
GTCATGGGTATACTGTTTTTTGAAAAGAAGGTTAAACCCCTGGCCTCTTCATCAATCGAT
GCATGCAATCATCTTTATTAATTATTCTATAAAGGTCTGACAAAAACATACATTAAACCA
CCTGAAGCTACCACTCACACCTACAAACTTGATAATGTGGAGTGTGCTCTCACTCCCCAT
ATCTAAAACCGGTGTTGTCACTAATCCATCCACATAACGTATCAGGACCAACAACCAGTG
CAGCAGACCTAAAATGCACAACACATGCACACATTAGAAGTCGCCATCATCATCGACCCA
CTAATCCATCCTTAGGAGAGAGTTCCACATCATCCTTGTCAGTCCAAACATCGGCGACTA
ACGGCGCCACCGCCCTACGCTCATCCGTCCATATGCGAAGATTCTGGAAGAACTGTCGTG
CTAGAACCTACCAACCAGGCATCACTCAGCGTAGCACCTGTCGGCCGGGCATGACTTGAC
TGCTCCACCAAAGTTCCGTGCAAGACGAAGCTGATCCACTTCCTGCCTGTGTCATCCAGC
ATTGCTCCACAAATGATGCTTCCAAGATAGAAACGGCATCAAAGTACCACTATCGTACAA
TCTGAAAGACCAGATCTTAGGGTTTCCCCCACTCAGCTCTCAAGGCGACACACAAAGTGT
CAAGGACCCACAAAGTGCCCACAACTATCAGCAACTGTCAAGGACCCACAAAGTGCCCAT
CACCACTCAGCTCTCAAGGCGACGCCTTCAGGAAGGTCATGACATCAAGGACGCCGCCGC
TGCCCACCGGAGTTAGGGTTTTCACCCGAGAGGCAGGGAGGTGGGAAGTGGAGGAGCAGG
CGTGATAGTTGCCAATGACGATGTTGTGTTTGTCCAGCCCTCAGAAAGCATGCAGGGAAT
CACCATCTTCAAGACGACACCATGAGGAGGGGAAGCGACGAGGATCGACGCCGTCGTTCC
ACCCTGCACCACATGGCCAAGGTCACCCGAAGATGAGATCTTAGGCACGGAGAGAGGAGA
GCTTCACGACGACCCCCTAGAGGGTAGGCGACGTCCACGGACGCCGCGTCATCAGTCTTT
CGCCTAGAGTAACCCAGACTCCGCACCCCACACAATCCAACAACAACACCGTCGACCTGC
AAACTCGCTGGCCCAAACACCTCCAACGTGACGGTGCCACCACCACCATGCCGGAGCCAC
CTAACTCGCCACCAACACAAGCCAGCGGTCCAGATAGGGAGCGAAATAGATCTGGCGCCC
AACCAGCATGCCAATGCCGCGGCCGGCGAGGCTCCAAGCCGTACCATACACACCACCAAG
AGCAGGAGGGGGGCTGCCACACCACCCCGATGCGCCGAAAAAGGGAGACTCGCTCACGCT
GCCGTACCGGGTGATGGGGTTATAGTCCTAGGGTAGGGTCAAAGGCCTGCCCTATAGGTC
CTACCCCAAGGACTACCCTTCATAAGGGA