morexGenes - Barley RNA-seq Database

Contig contig_2551099

Source Contig contig_2551099

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2551099 (6548 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location

Predicted Genes from contig_2551099

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38684	1	461 bp	MLOC_38684.1	Available	Available	None
MLOC_38685	1	794 bp	MLOC_38685.1	Available	Available	LOC_Os02g27760.1, FRAME:-2, EVALUE:1e-85, 13102.m03029 protein 40S ribosomal protein S15a, putative, expressed

CDS Structure of MLOC_38684

CDS Structure of MLOC_38685

Contig Sequence (6548 bp)

>contig_2551099 6548 assembly3_WGSMorex_rbca.fasta
GGGGGGGCGCTCCCCGCGGGCGCGCGCACGGGGGGGGGGGGGGGGGGGCGGCGGGATCGG
GGCGCACCGGCAGACGAGGGGGCGGGGATCGGGGCGCGGGCGGTGGCGGATCTGGGGGGG
CGAGGGCAGGCAGGCGAGGCGAAGAGGACGGCGAAATCGATTTTTTTGACGTGGGGGGTT
AAATGGTGGTGGCTGGTTTGATTCGTCGGCCTTGAGTTTTGTTTTTGTGCTTTCGATTCG
ACGGGGGTGCTGCGTCCGTCGGGTCGGGTCGCCTCGCTTGGGTTGAAAGACACTGCTTCC
ACGGCCACCGACCGGTGACCCTATGCGCCGCGTGGGGAAGGCCTTGCACACGCTGATCTG
TGGGACATGCTCGTGCCTCTGCTCCTCCGGGGCCCGCGTGTCGGCCAGGCCGGACGGTAT
ATGTACGTGTGGTGATCGAGTATGTGTGTGCGTGTGTGATCTTGCGTTGCTGGCTCTGGT
TCTAAGGAGAGGCGCGACAAATAGTTTTGCGTAACTTTCCTAATTTGACTTGCTAAATGT
GTGAAATTTTCACAAGAAAACTACTCCCTTCATCCCAAAATAACAGTCTTAAGCTTAATA
CAACTTTGTACTAGAGTTAATATAAAGTTAAGACAGTTATTTTGAGACGGAGGGAGTACC
TTCAAACCAAGCTAGGGATGCAAATGCAAGCCCAAGTAATCACACCTATTTTAACAGCCA
TGCCAATGCAAAAAAAGATTAACGTGGACGCATCCGCCTGCATCCCTAAAACCAAACACG
AGGCTCTTTTGCGTTGTGGCGTGTTTCCTTTTGACGAGGAACCCGGATAGTTTAGGAAGT
GATGACCAACGGCGCATAAGTATGACGTGTAACTCATGTCGAAACCAATTTTCGGAAGGA
CACGTTTATCGTAATTGAGTAAAGGAGACCAAAAAGATGCATCCAGACAATGTCAAGTTT
CCAAAAACCATGACACGGGAGCGAGAAGCTTTCAGAAACCACTATACCGTAGGAGGGTTC
TCGGAATCAGTTGCAAGCAAAAGCTAGATCAGTTGCTTGCAACCATCACTCAATCAACTA
CACCAATGTTCATTCTCCCTTCGACCCCGCCGTTCTTTTCTATCACGGAAGGGGAGGAGG
AGAAAAGGGAACCATGTATGCAGTGCGAAGCATAAGCTATCGGCCACCTCCGCCATTCTT
TTTTATCCGATGAGGGAGGTGGAAAAGGGAACAGCACTGGCTTCCTTTCAACTCCACACA
AGGAGCGCCCTTTGTGTGGGTGGTGGTCACGCACCCTCCATGCCACCATGGCTTGCAAAA
TTAACACTGGCCGGATTCTTGCTAGTGCTGTTGCCACACGCAAAAGCTGGCCCGAGAGAT
CGTCAAACCGAAAGATTCCGGTGAGGTTACCGCTAGAGCACCGCTTGCTTACCTGAGTCT
AGGTGCCGTGAGCTGTGAGCCTGTGACGCCACCCCAACTAACGCAAGTGCCTCCAAACAA
ACAGCTCATGCCCGGACGAGACCAGTTCTGGACAACTAGGACCGGTTCCCATGTCAAGCA
GCCTCGCACATGCAAAGCTTAGTCATCAAGACTCTAGTATTGTGATGAAATAAGTTTATT
CCTCTTTCCTTCATAATAATGATAACAGAGGCTTCAAAGACTGATTCTCAGAGACATCTA
CTCCCTCCCTTTCTTATATTTAGAAATTAAGGTAGTATACTCCCTCGGTTCCTAAATATA
GGTCTTTTTAGAGATTGTACTAGTGGACTACATACGAAGCAAANNNAGTGAATCTACAAT
CTAAAATATGTATATATACATCCATATGTAGTCTTCTAACTACTTATATTTAGGAACGGA
GGGAGTACTCGATAACAAAAAACAATTCCAATGCTTGAATACGCTAGCATCTATTCTTAA
AAGAATTTTATTTTATGATAGATGGAAAAGCACTTCGAATGACCACCAAATACAGTTTCC
AACTACTAGAGGAATACAAAATGAGAAACACAGATGGAGAAGCAATCGACAAAAATCTAT
CCAACCAAACAAAGACAAATATCCTACCAAACAAAAAGACAAACGACGATATAACAAACA
TCGCTCTCGCGAGAGCCAGACCAATAACACTCTGCACTGCATGTGCAATTGCCCATGATA
TGCAAGGACACGAATGGCATCTTCAAAGTCATGATTCATTGCAGGTAAGGCGCGAAATCT
CATAGTGCATCTCATAACAATTAACGGAATCCAACATAACATAACAAAGGCATAGCAGCT
ATGCAGGCAAAAAGTAGACAACCTTGATGTCCTGAGACAACATCCTATCACACTGGTTCG
AAATACTTTAACAAAATTTCCGCTCAGTAGAAGAAGCCTAGCACCTTGCCACCAACGTTC
TTCCTCCTTGCCTCCTCGTGGTCCATGATGCCAGCAGAGGTTGTCAGGACAATGTAACCA
AACTGCAGTCCAAACAGGTAAGCTTGGTTATGATAATGGTAATAGGTTGGAAGAATCATA
CTGGTTCACAGTTTGTGACGGCCAAATATGGCAAAATGCTACACAGTTTGCAGTGAAATG
AACAGGTATCGCATGTAGCAAAGAAGCTGACCTGACGAGATGGAAGCAGCCTGGCGGTCC
ATCCCTCGATCTCCTTGACACCAACATCAAAGCGGGGACTGATGACTCCACACTTGTTCA
GTCTGCCGTTCAACTCCACAACAATCTTGCCAGATCTGTGGTCATCAACATACTCAAACT
CACCAATGTAACCTGCAGAAAAGAGGGGGGCATTGAATGAGTAATCCATGCTGTTGGATG
GTTGCATATAGAACATTGGATCAAAGAGAACTAACCGTGCTTCTGCATGACGATAAGGAA
CTTGATGATCACCTTTGAGGAGGGCCTGATCATGACCTGCCTCTTGCCACGCTTCTCAGC
GTTGTACATGCTCTTGAGAGCATCGTTCAGGACGCTAACCCTCACCATCCTTACCTAACC
TGCAGAGATGGACACAAAGATTCATAAGGTCACCTTGCATCACACATATTTCTGCTAGGA
GTTTAAAACAACATAACCAAATGAAAAGACTGAGAGTGGCAAGATTGCCTGAATAGCTGC
TAAACTATCACTGAGCAACAGCAGAAACAGATGTGAAAAAGGAGCAAGTGTGACATATAA
AAGTAAATGCCGCACATAGAATAAAACTAGGTGGAATCCCATAAAGCCTCTAAATCATCA
TGGTTCACAAGATTGGTAACGAACTGGAAAATGCAAAGGTAAAACATCTGAGCTTTGTTT
GGCACCACTACTTTGGAACACACCTACTGAGACTTGCTAACACAGAAGCAAGCCAGACTT
AGACAGGACAGACAGTCATGTAAATGGTTTCCTAAGTTCACATGAAACAGATATAATTGA
CAGTGAAGCACAGCGCCTATTAAAGCATACCACGACAGCTAAACATGCCACAAATTAATT
GGTTCAGATTAAACATGCCAACCTACATCAGATTAAACATCTGGTTTCCGTTTTGGAAGA
ACTCTGCGACAATTGTTCAGGGAAATGCCACAGATAAGTACCACGTGTCTTTGATCCGCA
ACAGAGCATGCTTCAATTTCGATTTTTACGGGGCCAAATAATTTGGCCAGTAGTACAATT
CATGGGATGAAAGATGAAACCAAGGGATCTACTATAACAGCCGCAGCGGACTCGTGATCT
TAGAATCTAGACCGTCTTGATTCACCATCAAACCCGAAGCTGCACTCGTTTCGCGCCGTT
GCCTACCACATACAGTACAACCACGAGCATGAAGGTGCGAGTAAACAACCACGAGACCAA
GGATCTGATCAGTAACAGCATGGTGGAAGCGAACACCTTCAACGCCTGACCTAGCGAAGG
ATCCCTACGCGCGAGGGGGCGGGGAGGGGACGGAGAGGGGCCGAGGACCCGCGGGAGACG
TACCTCGTAGGGGAGAGACGCCGGGAGCTCTCTGCTTCGGTGGGGTGGCGGCGGGGAGGC
GGGGGCGAGGGAGGAAGGCGACGGCGATGGAGAAACAGCCCGAGGTAGGGTTTTGAGCTG
TTAAAAAAGGAGAGAGGGCGGGCGCGTGCCCGTTGGATCTTGGTTGGACGGCGATCAATC
GCCTCTGGGGGTGGGTTGCCCTAGGCGGATGCGCGCAGGTTTTGCGGTTTGGTCCTTTGA
TGCTTGGATATTTGAGCGACGGGTCGTGGTGAGGGGCATGTGGGACGGGTTGGATAAAGA
GAGCCAATTCACTTTAGACCATCTACTATATATACAACTAGAACTTACAAATTCGACCCC
TCAAACGTCCGTGAGCGAGTACGGACGCGTCCGTGGACAAAGACCGATCACGTCTCAAAT
AATGCATTCTATAACCGGGCATCTTAAATATGATATCTCAAATCCATACAAACGGATGGA
ACTACTACGTCGATACATTACACACATCGTCGGACTACTCCATCACTACAACATGCCGTC
GGACTACCAAAATTTGGCATGTCTCGCTATGATGGACATCATCCATGGCTGCCCTTCCCC
TTCGCGGATACCTTGTCGTCCTTTTTCAGAAGTATCGGTCGAAGACGCGGTACAGATCAA
GCCGGAGTTGTCCTCGTCGTCGCTCACCTCCTTCTCCACCTTCGATGGCAGTCCAGTCAT
TCCACGGAGATTCTGCTCTCGGGCGAGGGCGCGCGTGTTCCTACGTTGTCGTTTCTTCAA
AATACGGGCACGGATGGCTTCCTCCGCATCAAGCGGCTGTGCCGCCATTTCCTCTACGAT
ACGGGCCTCAGCGCCATTATCCTCTCCTTCCCACGACGGACAGCCCGTTCCCGGTGGGAA
GCAAAGTCTGTCAGACCGATGATGCGGAAGGAGAGATTTTTCGGTCGTCGAGACCGTGAT
GATCCAGCCCCGGAGGACCCGAGCATCTGTTGAGTCGATGCGATAGAGTCGCGGCAGACA
GATCATGTCGTGAGCCGGGCGTTGTCCTCGCGGGAGTGGCAGAGTGCAATGCGGACCGTC
ATTGCCTCCTCCAACCCGCAGGGGATAACACCCAGTCGATGGATCCGGATTGGTCGGAGT
CAGATCTGCTGCCCTTCATGTCGGAGAAGGCCGGAGATCATCGAAGGTGCCCTTGGGTGA
CGGATGGGAATGTAGGGGAGTGGAATGAAGTGGCTAGGGATTGGTCTTGCGAGCAAATGG
GGACGAATATATGTGGGGCCGATACGAGCCAGCGCGGGCTAGGTCGACGTGACGGACGCC
CCCATATTCGTCCCATATTTGGCTGGATATGAGGGATTTCGATCAGCCCAAACATTTGAG
TTCCGTTTGAGGTGCATGGTTAGGTCAATATTTCATGTCGATCAATGACCAAACGTCTTG
TCCGAGCATTTAAGACAAGTATAAAGGATTCGCTTGTAGATGTTCTTACACCGCCCGTAC
CCACGGTGAATAGAGTTAGTTCACCGCTTGATTTGCCTCTTTGATTGGCAGCATTTCACA
AACACGACACTAGGAAAAAATGTACAAACATGATAAGATGTAAAAGAAAGATTGAAAAAC
ACATAAAATTGCAGCATTAAGTGTTTGATTCACGGAAATGGGGAAATACATGATTTCTGG
AAAGCATGGTCAAATTATAAAAAGATAAGGTTAAGATTTTCGCAAAAGCAAGTAAAATGA
AGTTTAAGTTTACGACAATATAATCGAAATCATTTATATACATACATATATAACCGTCCA
TATGAACGCACGCACACATATCTATCTCTATGAGCACATTTGACTTGGTCTCTATGCATA
GGAATGTAAAAAATGGTTGTAGTAAATTGTAGAATTTCTTTATTTTTTCCTATGAGGCTC
AAACCAAAGGAAAAACACATGCATTTTTCATGTACTCAATTCCTTTGAATCAAATGAGTA
TTTAACAAAAAAAAAATACGACATTCCATCGTTTTGTTCCTACACACTACTACTTTACAA
TTTTGTGCCAAAAACTACCACTTTTTCATAATTCGTTGCTAAAAACTACCAAGTGAGAAA
ACTGCCTGCTTCGCCGTGGTTAAACCCGATTCTGACTGGCCGGACCTATTTTTCAGGTGT
TAGTGTGGCCAACCGCTCACGGCCATGCATTAACGCCCGTTAAAGGCCCCGTCGGTTTGG
TGTGGTCAACACCTCCCACTCTCCTCTCGCAGTTCACTATATCTCTCTCGCGCGCGATGC
TTTTCACTCTCTATGACCTAGGTGGTGGCCGCCATGACGTTGGTGAGTCCGTCCGACGGA
GGCGGCGATATGGGTGGCAACGGGGTTGGTATTGAGGCCGCGAAGCTCTCCCGTGTTTGT
GACTTAGGTGTTCGGCGCCATGGCAAGGGTGGATCCGACCTTGGAGATGGTGGTGGTGGC
GACGGTATGAATTTTGTGTTGGAAATATGCCCTATAGGCAATAATAAATTAGTTATTATT
GTTGGAAATATGCCCTANNNNNNNNNNNNNNTTAGTTATTATTATATCTCTTAGTTCATG
ATAATCGT