Contig Data
morexGenes
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Map Locations of contig_2551079 (4668 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2551079

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38677 1 890 bp MLOC_38677.1 Available Available LOC_Os05g42190.1, FRAME:+1, EVALUE:2e-90, 13105.m04486 protein NADPH-dependent FMN reductase domain containing protein, expressed
MLOC_38678 1 695 bp MLOC_38678.1 Available Available None





CDS Structure of MLOC_38677






CDS Structure of MLOC_38678






Contig Sequence (4668 bp)

>contig_2551079 4668 assembly3_WGSMorex_rbca.fasta
TAGCCATATCTAATCCACGGATGGGTTGTGTATGCCTTAATTAGAGTTTTTATCACAGAG
GATCTGAAGTGAATACATTATTCAATTGGTATTTAACTACTAGATTAGATATGCCCGGTA
GCAGCACACTTACATTATACAATTGGTGTTGATGACTAGATTACATATCCCCGTAGCAAC
GCACGGGTTTTTTACTAGTATATATACAAGGAGAAGAGATGCAACGAAGAGGCATTGTTC
ACCAAGATGACGGTTACATGAAGAGATTATCCCATAATTAATACATGTTAATTAATCTTT
AACATGTACTCCCTTCGTCCAGAATTACTTGTCCCACAAATGTATAAAAATTGATGTATC
TAAAACTAAAATACATCTAGATACATCCATTCATATGACAAGTATTTTCGGATGGAGGGA
GTATGATGTATTGTTTGCATCATCGACAGGTCACTCGGCAAACGCAAATTCAAGGCCGTT
CACCAGAATGCAGTGACGTGACGTTACTAGATGCTTTGTTGGTCAGGTCAGGGTCTCAGG
GAGCAGCAGCCGCCGGCGGAAACTAGCGATAGCGACAGTCACGTATGAGAGTTGATGATC
CACACACGTCGTGCGCGCGTCATGCTGAAGTTGGGGTATTGGTGTGGAACTGTGGATGCA
ATTTTCCCTAATTTATAAGTAGTACTCCCTCCGTTTCTAAATATAAGTTTTTTTGAGATT
TCATTAGTGGACTACATACGNNNGTATATAGACATATTTTAAAGTATACGTTCAATCATT
TTGTTTCGTATGTAGACATATAGTGAAATCGCTTAAAAGACTTATATTTAGGAACGGAGG
GAGTAGGATGCAATTTTCCTCTCATGCTCTCTCTTTTCTGTTCAAGCAGCTTGCTACTAC
GTTAATGACCTAGTCACAATTACTCAATTTATCATCACCTAATCCCATTACCACATTTCT
GTTCGTTTTCCCTTGGTAATATTGCCAGGACAGACGTGCTGACATCAGCACCGATGCCAT
GAACACGCACGCGCAGGTGCCCACACTCATTCTTCATCAGTACTATTGACTCGGTTTGAT
GCATACGTACGACTCAGCAGATTTCTCTACTCTATAAATACTGGCGCCTCTCTGTGTTCC
TCCTTCGCAACTCACAAGTCATACAGCGATCGACAAGAAAGGGAGCAGTTTAAGGAGTAG
AAACTCGAATCAAGGAGACCACAACTCTACGGCAATGGCGACCAAGATCTACATCGTGTA
ATGCTCCACCTCTACTTATTACCCTTGTTTCGCCTAGCTTAGCTCATTCATCTGATTGCT
CCATTTCTTCTGTTTATTTACAGCTACTACTCGACCTGGGGACACGTCGCCACGCTTGCG
GAGGAGATTAAGAAGGGCGCCGGCTCCGTCCCCGACGTCGAGGTCACCATCTGGCGGGTG
CCGGAGACGCTCCCGGAGGATGTGCTGGGGAAGATGCACGCCGCGCCGGGGCGTGAGGAC
CACCCGGTCATCACGGCGAGGCAGCTGGCCGAGGCCGACGGCATCCTGTTCGGCTTCCCG
ACGCGGTTCGGCATGATGGCCGCGCAGATGAAGGCCTTCTTTGACTCCACAGGCGGCCTC
TGGCAGCAGCAGTCCCTCGCCGGCAAGCCCGCGGCCGTTTTCTTCGCCACGGGCACCCAG
GGCGGCGGCCAGGAGACCACAGCGCTCACCGCCGTGACGCAGCTGACGCACCACGGCATG
CTGTTCGTGCCCGTCGGGTACACGCACGGTGCCGGCATGTTCGACATGGCCCAAGTCAAG
GGCGGCAGCCCGTACGGGGCTGGCACCTTTGCCGGCGCCGACGGCAGCAGGGTGCCCACT
GACGCCGAGCTCGCTTTAGCGGCGCATCAGGGGAAGTACTTCGCCGGCATCGCCAAGAAG
CTCACGTCCGTACAAATCTGATCAACAGAGGGTTACACAGTGCCATGTATGGGACCGAGT
GCAAGATCATCGTATCCAGTGGAGCAAATATTTACACAATTATGTACTGTACGAACAATC
AAACAGTAATTTCATTCAGTATCTTGTTTGGAAAAAATATTAATAATACTCCATTTTTTG
CTTATCAACTTCGACTTTGACTCATGGAGCCAGGATTGACCCGAACTGACCCTCAATTTT
TATACAGTCTGTAAATTAATATAAGAGTGTTCAGATTACTAAAATAATGTTCTAAATGCT
CTTATATTAGTTTACGGAGAAAGTATATAACAACACAAAAGCAATTCGCTCTAAATAAAA
TAGTCTTTTTTCGGTTTTAAGTTTTAACAGGTATCATTTGCACAAGGAGAAGACAGTATC
ATTATATCAATAAAACTAACTCCTCTCCCTAACATCAAAACTAAAGAGGTAGATACACGA
GTGGTGCTTACACTTGTCCCGAATGTTCTGTTTATTGCCTAAACTTAAAAGAATAGGTTG
AATTGGTTTTAAAACTTGGCATGGACGTATAAATACAGTGTTAATTTCAGCTGTAAACGT
AAAGTGAGCCGACGTGGCATCGTATATGGCTGATATGGCATCGAAATGGGACGAGACATG
CCACGCTGTGGATAACCAATAACTATGGTACACAAATATCTGTATGCACATAAAATAAAT
ATGCATACGTGTGTCATACAAATTACTAAAATGTTCCTATAATTTTTAAAAGCATTCAGT
TGTTGTTTAGAAAATATGATTCTTAATATACTCCACGAGTGTTTAAAAATGTTTAGTAAA
TACTCCCTCCGTCCTGAAATTATTGTCATGATGACAATTTTGACAATTTTTCGTAAACCC
TTTGAGTTTATCCCGACACAACCTGTACTCCTCGTTGTTCCTCTCACTCGTCTTCTCTCC
TGTGAGCTTTCCCATTCCCCTTTCCTCCACCTCCGTTGACGACAGCTCCCGACCAACTCC
GGCAAGTCCCTGCGTTGCTGACCTTTGCTGGCACCCTCCCCTTTCCCTATACCGATTCCA
CGGCATCGATTCACATCCCCCACCACAAACCCTGGTAACCAAAAGGGAGAGCAGAAGGAG
AAATTTTTAATTTTTGCGTCCATGGATGGCGGCGGCGCGATAGAGAGTGGTGGCGGTGTA
CGAATTCAGACTTCCTTTATGGACATCCAGAAGGCCACGGCCATCACGGACGCCGGCGAG
CAGGCCGCGGGTCCACAGACGCGGGAGGCAGGAGTACGTCCTCGGGCCTGCAAGACCGTC
GACCAACGGGTCTGGCAGCGCCGCTACTTCCGACGTGGTCGTCTTCCTCACTTGCTCCGC
TCTCCCGCCTCTGGTTAGTGCCATGAGAAGCAATTTGGCGTGTTGGTCAGCTCGTTCTTT
AGGCTAGCATCAGGTTGCCTGTTTAATTACTATAAAAGCACACCGTTTTCATTTTAATTT
CCGATACTAGTAGGTGGGACCCACTAGTCATTGAAGAGTCTACTATACAATAATTACCTT
GTTTTGTCTTACAAATGGGCCCCTTGCTATGTTGATGCCATGTCAGCTATGACACATTGG
TGCATATTACGTCTACAGATGACATTAGCACCGTATTTGCACATTCATGTCAAGTTTTGC
AACCACTTCGGTGTATTTTTCAAGGAGCAATGCTACATCTACGTAAATGTTTACGTAAGT
TTACGGGATAGTCTGATTTGACAATCATTGATTAGATTAAGAGGAGGATGAGGCCCACCC
ACCCCTGAAAATCAGGGGGCATGTTTAGATTAGTTAGTAGGTGTAGCATTTTCGTTTTTC
ATGTTCAGTCACTAAACTGAACACCACTAATATATTTACCTCAAACTAAACACGAAGAAG
ACAATCCATTGATTTTTTTCTAGAACAGATAATCCATTGATGATCAATAAGCACTAGCAC
ATGGGTCGTTCAAAAAATACGTATCTAAAATTACGCTCACGAACAACGCGGTGGGGCAAC
CCACAAATAGCTCTTCATTTGTTTATCTACACTGGCGACACACAATAATTTGACAGGTCA
CACACACTCTTCAAGAATTATCTCTCTCTATCACCTAAAAAACGAATTATCTCTGTGTCT
CCGTCGCATGTCTTAAGGCATCTCCAACACGAACCACTAAAACAGATATCAACAGACCGG
ACCGGACCGGTGTTCCCACACTGATACAAGAACCAGCCATTTAAAGCTAGTCGTAAATAT
CAGGCCATATTTTAAGGGGGCTGCTAGGCATCCATCGGCGGATGTTTAGTAAATATACGC
CATCTGGAGGTTCGTTCGATGTACGCGTGGTCGTCCCGATCTACGCGCAGCCGTCCGACG
CTCCATTCGGACACCCCATAATTCCTGAAACGACGGCCGAGTTACAGAAACTTTCATTCC
TGAAACGACGATCGAGTTGCAGAAACTTTTGCTTTGTTGCGAGAAATAAATTTTGCACGC
GTTAATTCGTTGAACAATGGTCGAGTTTCAGAAACTATTTGCTTGTTGCAGAATTTTTTC
CCTTCGTCTTTGTGTAACATAGGTATTTTTACGGAAGAATTTTTTGCAACAAAGGTCATG
TTTTAAGAATTTTTGCAACAAAGGTCATGTTGCAGAAGCATCAGCTCCCGGCGGCCGCCT
CTGGAGCCTCCAACGCAAGCTCGCCTCCTACTCCTTCTCCTCCCGCTC