| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_2550979
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_38640 |
1 |
863 bp |
MLOC_38640.1 |
Available |
Available |
LOC_Os05g30720.1, FRAME:-3, EVALUE:2e-32, 13105.m03141 protein transposon protein, putative, unclassified |
| MLOC_38642 |
1 |
595 bp |
None |
Available |
Available |
None |
| MLOC_38641 |
1 |
1031 bp |
MLOC_38641.1 |
Available |
Available |
LOC_Os12g29700.1, FRAME:-3, EVALUE:3e-38, 13112.m03021 protein retrotransposon protein, putative, unclassified |
CDS Structure of MLOC_38640
CDS Structure of MLOC_38642
CDS Structure of MLOC_38641
Contig Sequence (3791 bp)
>contig_2550979 3791 assembly3_WGSMorex_rbca.fasta
ATGCTAGGGATGTGCCAATGCTAGCTTTATGACAGTTCCACAATCTAATGTTTGCTTGTT
GGTTAACTTTCCTGTTTGATCTAATGAATTGTTTTTTACTGGGTGATACAAGTGTGTGTG
TGTGCTCCTGTTCGAAAAGTGTCACAATGTACTTATTCTCGGTCGTGCATTTGACTGCAA
GTTTAGCTTCACACCCACATCTTGTGATTTTCCTCTCATATCTCCTCTTACTACCAGTGC
TAGCTACCAAAGTTTTCGTACGTTTCCGCTCCTCATGGAAACCTTCATGATCACAGTAGA
AATGCTTTGTGAGTAATGACACCATTGACTGTCTTTCGCTGCCCCACACGTACTGAAAAA
CCCACATGATGTGCATAAGCTTCATAGAATTCCTTGGCTGCGTTCAAATTAGCAAAAGTC
ATGCCTATGATTGGTCTGATGGCATCATCACACTGCGGAGTACAAGATGAGCCCTACAAT
TTGAGCGAAAAGCACAACAGATTTACTATGTTGGAATACAGGAAATTATAGAGATATATT
GTACATATTAGTTAGGAAAGTACTTACACAGAAAGGTGCACTATATGATTTCTGTGGTGT
GGTAGACCCAATGTACAGACTTGGCCTAGTGTGTACGGCTGATTCTGCATTAGATTGGAC
ATCACAAATAGCCAAAGAAGGAGCCTTGCTCACTTCACTTTGGCATTCCATAGTTACTGC
ACAAGACAAGATATACAGATTGTCACCTCCTCTGTTTGCTTTGCAAATCTGGCCCAATCT
AGAGAAGAGGGAACCACTAGATGAGCCATGGTACAAAGGAGAACGGGGCAAAGCACAAAA
TATGAAGGGTACAAATCCTCATACCTGGGATCCTAGATCCAATATGACGTCGTTGGGGAT
CGCTTGGACGAGTATGGTCGGACAATCACCGGAGAGGAACCAGCCGCGTCGCTCGCTGAC
GGCTGCCCCAACACGGAACGCTCGGAGGAGGACTGTCACTGTTAGCAGGACAATCGCCAC
AGAGGAATCACCCGCGCTGCTCGCTGGCTGAGCACAGAACAAGAGGGTCTCGCCGGCTCA
TCTCCTAACCCTTTTTTTAAACAAACGCAAATCCATTACTCAACGAGGGCAGCAAGATTG
CTGGCTAGATAACAGTGTACAAAATCACGAGGATGCCCTGGCCAAACTACTTGGGGAACG
TCCCTGAGCATTGCACCAAATGTGGTGAGGCCGTCCGCAACTCTATTACAGGTTCTAGGA
CAGAAACTGATATTGAAGCAAAAAAAATTTAGGAAAATAGACTCCTTTATTTCCTTGATT
AGTACTCCGCACTGCCCCATCTCGTTGCCTTCATTGTTTAGCGTCTGAACCAATAGTTGC
GAGTCAGACTCAATCTGAATTCTTGATATGCCACATTCCTGGACCAGATGTAAAGCTCTA
CTACATGCATCTGCTTCCGTATGGAGTGCATCCTGAGCGTGGTCCAGACGACCAACTGCC
ACCCCCACAGCCTCGCCATTGGAGTTTCTCACCACGAAGCCCCAACCACCGCTTCCAGAC
ATATAATTAAAGCAGCCATCAGTGTTAATTTTGAGGACCTCGCCATCAAGGGGGTTCCAT
CGAGGGGTAGGAAAGGTTTGTGAATTTTCTCATTCAGGAAGGATTCCCCGTACTCCCTCG
CCAGCCCAGAGACCTGCGACGCCACTCGGTTTGGCTGCCAGGGGCACCTTCAGAATGTTT
CGCGTCTTCCACCAAGTCCAGAATAAAGCAACACACTTTACTCTAAACTTTGGGTCCAAT
TTCATAACTTGAGAGAGGACCTGTTTTGGGCCTAAATAGGAGAGAAGTTTGTGTTGATAT
CTTCCATTCCAGGAGTTTCCAAACTGCGTGAACACCTTTACAACGAAACAGCAGATGCAC
GCAATCTTCATTCGGATGGTTGCAAACCGGGCAAATAGGGTCAGCCTTAAAACCTCTGCG
AGCAATGCTTTCACGGAGGCTGTTATGGGCAATTCTCCATAGAAACACTTCCACATTTGA
AGGGCAAGGGCTACAAATATCATAGCAGCTAAACGCCTCATGGTCAGCCGGCTCATCTCC
TAACCAGAAGAGGAAATTGAATCAGGATGGCATAATGCGACAGGAAAGGGGAAAGGTACA
GAACGGCTTAGCCTCACGAGGTTTCTGTAACTTGGTACATAATTCTTGCAGGGTTTAATT
CGTAATTTGTACGTCCTTAAATCTCCAAGCGCAGATTTCCTATCCAATGGTACACAATCA
AGACCGTGGATGAAATACAGATACAACTAACTCCTCTATCACTAACTTCTAAGACACGCA
TACGTGTGGGTTAGTAGAATTTTGAATATTGCTCCATCTTAATTTCCTATTCCACTCTTA
TGGAATAGAGTACCAGCATTTTAGCAGAACCAATACATAAATCGTATTCACTTTTCATTT
CAGACCTCTTTTCCCCCATCTCACTTCTGCTGCTTATTTGGATGTTTATGTGACACATAG
AAAGTTGGTCATATAATTAATATATACCCCCTCTGTCCCATAATATAAGATTGTTCTTCA
AGCTATGTGTACAACTATAAGAAAAAGAAAGAGAAATTGTGTAAGATGAAGAAAGCTAAC
TCTATTACTAATACTAATAAAGATCCAAAGGCATCCGTGCGAACACAACACTGAGTTATT
AGGTGATTGTCCAGCAACACAACTTTTCACATAATTCAATCCATCCCCAGTGCGGCATGT
TAAACACCACATGAAAAAGATGCTCTAAAGGAACAAATAGCTAAAAAGGGTGTGCCATGA
AAATTGCTAGCATCTTCTGCCCTGAGCTTGTGTTGCTCGATCTGATTTCCCCAGAATGTG
ATATCTGCAATTGATGTGATCCTATTATGTGGGTCCCATTGCTACAAACTCGCTTGATTT
AAACACCTGTACAAAAGGTACAGTTCAAATAAATAAAAAACAGATGAAGAACAATAATTT
GTATAACTCGACAGAGCATAACTCTGGCAATGTCAGGATTCAACAAGAAAATATGATTGC
GTTGGCTAGTGCATGAAGCTTAACAATCACCACCAGTACACCCTCCTACAGCACGAGTGC
CTCACACTACTTACCCACAAGAAGTAGATTGTGCTAGGATTTAATTAGCACATGTCAGTG
ACCACATATCTTTATGTCACCTGATCAAGTCATATACGTTCCTCATGCTGAACCCAAACG
CGAATCACAACATATGTTATCTAAACTCTTTAGGTCACTTTATATCTGGCCCAACCGACT
TACTGAGTTCTTATACAAACAGACACTCCCTATAATAATAATTGCCCATGTATGTTCATC
AAGAATCCTCGACAGGATTTTGCAATATCTCAATGTATGTTGATGATTTAATATCATTTC
AGATTTTGCAATATCTCAATGTATGTTGATGATTTAACATCATTTCACAACACGCAAGTT
ATTGACAAAGCATGTGATCATCCTAAAACAAGACTATAAGATGAAGGAACCACATTGGGT
TGTTCTAATTTATGGTCAAAGTTCAATTTTGAAATGTGTGCGCCCCTTATTCATTGGAAT
GGAGGGAGCAGGATGTGGAGCGGTGGAGGTCAAAAGCATGCAAAAGAATCGAAAGTGCCT
TTCTGCTCCCGAGCTCATTTGAGCTCAGGTGAACAGTAAAATCGAAAAAAAATCAAAAAA
TGTTCAAAAAATTCTGAATTTTTTTAGACCAACTTTGACAAAAGTTCTAAGTGCATGCAA
AAATTTGGCAT
