morexGenes - Barley RNA-seq Database

Contig contig_2550946

Source Contig contig_2550946

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2550946 (4643 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2550946

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38630	1	691 bp	AK374566	Available	Available	None
MLOC_38631	1	590 bp	MLOC_38631.1	Available	Available	LOC_Os02g02630.1, FRAME:+1, EVALUE:6e-16, 13102.m00208 protein THION20 - Plant thionin family protein precursor, putative

CDS Structure of MLOC_38630

CDS Structure of MLOC_38631

Contig Sequence (4643 bp)

>contig_2550946 4643 assembly3_WGSMorex_rbca.fasta
CTTAAAGCTCTTGAATTTGCTCTCTCCATCTGTGATAGTGTCGACATGTATGGCTTTACG
GTAGACCCAGGCTACAAGGAATGGTAGGTGATTTACATGTTATCTGTCATTGTAAGCATG
GACTTGTACTTACATTTCATGGTACACTCTTTCAGGACGAGATACTTTTCAGAGTCCAGA
AAGGGACACACTCCACTACATGGCAGAGCATATTATCAAATGATGGAATGTCTTGGTGTG
AGTGTGTTTCTTCCTATAATCCTAACTGATAAAACCATGTCTACATCCATTGAGCAGTAC
AAGTATTTTTTTTTCTTTGTTACTGCATTAAGGGATCGTTTACTGATGTAGAAAATCATG
TGCAGCTTGTAAAAATCCACTCGCCAATGCGGGGTGATCCTGGTAGGGTGGTGAGATGGC
TGCCTACCAAGGACACCATTGAAGCTGCTAGAGTTGCTTCAGAGAAGTTGTTGAAGTGAG
TTTTTCGGACATTCCTTTCTGTATTGATTTGCTTTTGCTTTCCTCCAATCTTCTAAATAA
GCCACAAGAGCCTTACTTAGGGTATTGACATTGTATTACATGCGATAGGCTTTGATGCTG
TAATTTAACTTCGTCTCTCATTATGATGTAAGTTGTATGACTAAAAAAAATCATCCTTGT
GAATTGCATTGAAGGAGACCTGGGGCTGGAAGTGACGACCCTCTGAGGAGCTGCACCATG
ATAAAGAAGCGCAAGAACGGAAAGGTGCCAAACAGATCGGGCCTCCGAGATGCTGCCACA
AATCACCTTAGGTACATGAAGGGTGCCACCAGGTATCCCCTGGAACGGAGCGCCGGGGGT
GGTTACCTCTGCATGATCAACGACAGATAGCGCTAACAGCTCCGCATATTCCCATTAGAA
GACACCATAGAGGTTGGTGAAACACCACAGAATCGCATGGTGCCTGCCTCGAAGAGGAAT
GGCCATGAATCACTTGCACTGGCACACAGTTTTATGGGGCGTCGATCAGTGTGCATGTAG
CGTTGAATATTCGAAGTAGGATCGTTTTGCACACACTTAGGTAGACGATTTGCGGCATGA
GTTCTCAAGGGTTTGCGACTTACACCGGGTTTTCGGGTGGTGCTTTGTTTGTTGAACAGA
ATGAACATATAATTTGGCCCTTGCAACTAGAAGACCTTTTTTTTCTTGGCCTCCACTGTC
ATATAAATAGCACTGGATCAGAACTGCATTCTGTTTCCTTTCTACATCAGCACGGGCAGC
TCCATGGAGCCTTGTCTAAGAAAACAGAGATGGCTTGCCTAGTCATTTTTGGGGTCCAAG
ATGAGTGACATTATCTTCAGAGATGAACTGCATGGCAAAACTGGCTACAGTACACGCTCC
ACCTGGCCATCATCCATTTGCTGAAAACACGCCACACGACCTGGCGGCAATGTTATGAAA
AAAAACGCGCCCTTTCTATTTACCGGTAATGGCGAAATATGATGCCGGAAAACACATTAC
GGGTTATCGGGGTAAAATCTCTGTTTTGCCTTTGGGACTTCAGTGGTATATAAGATGACG
CACCTAATTCCGCCGTCAGCTGGCGTCTACCAACGTGTTATGCAGATGGAAAAGTAGTGC
GGGAATCACCAGCCATTTATGCAGTAGAAAATAGCACCAGGCTAATGCAGACACAATTCA
GTTCAACTTGCAGGAGCTTCTTCCCAAACTCTCAGGTCACACTACTGATGGGATTCAACA
TTCACTACTCAGAACTCAGCATAGACACAATCACGTGTAGGCTCATTTTCCGTAGAACGG
ATACTTCAGTAGATGATTTGCAGCATGAGTTCAGAAGGGTTTGTAATAACATATACTTCG
GTAGATGGTGCTTGCCTGTGTAAAAGAATGAACAGATAATTTGCCGCATGTAACTAGAAT
ATATATATATATATATATATATATATATATGGCTTGTCTGTGTTACACTGGAATTATTAC
ATCCAAAAGGAAGAAGCTTGTAAAACTGGTTGGAAGTATTTACATCCAAAAGGAAGTTCC
AAAATGAAATCTGATTCCTCTCACGCGCCGCTGCACACAGCTAAACAGCAATGTATCAAA
AAACTGCATTCGGTTTTCTTTCCACATCAACACAAACAGCCTCACAAAGGGCTTGTCTAG
TCAGTTTAAGATCCGGGAGTTAATCATTCTCCTATACAGTGATTTGATATTTCGTTCAGA
AGATGAATTAATACGTACCATGGCAAAACTGACTACAGGGCATGGTCCAGCCGGCCATCA
CCCATTCGCCGAAACACGCCACGCGATCGAGCCGTGACGCGGCGCCATGAAACCCTAGCC
ATTCGATTTCCCATGAAAATAGCGAAATGCCATGCTCGGCTACCTTACGAATTATCCGGG
CCAAAATGCCGGTTTTGCCCTCCGAGGTCCATCCAGTACCCCCTATAAGAAGAACCCAAC
ACTGACTAGCAGAGTCACCAACAGAAGCACCCTTCCCTCCTTCTCCCATTGATCCTGAAG
AAGCATCGTTGGTTGGTCCAGGAGAAAGAGATGGAGGTGAAGAGGAGAGCGGCAGCCATT
GCCGGCCTGTGCATCATGCTCCTCCTCGTGCTGCCGTCGGGGCAGCGGCAGCAGGTGGCC
GCCATGTCCGAGTTCTGCAAGTGCTTCGACGGCTGCTACCCCGGGTGCAGGAGCCCCGGC
GTGCCGCGCTGGCTCTGCGTCCCGTTCTGCGCCAACAAGTGCAGCCCCAGCAGCAACCAG
GCCGGCGACGGTGTCGGCTCTGCCGCCGCGACGTGCAGGATGGCCTGCAAGATACACATC
TGCGACTCGTCAGAGGAGCCAGCCGGTGAGACAGCAAACCACCTTGATCACATTCTTGTT
GTTGTTGTTGTTGATGAGTTGAATCTGTTCTGATGATTTCTGTTGTTGCATTGCTATTTT
GCAGACGCAGCTGACGCCGACGTCTGCGTGCAGAACTGCAACAAGATGAAGATATGGAGC
CACGAGGCCCGTAATTAGCTTCCAATGCAATTGCAAGCTGCTCTAGAGGAGAAAAAGATT
TGAAGAGCTAGCTTGTTGTCAATCATGGGATGATGTTGAACTGCTGTGATTGTGGCAGCA
ACCAATAAAATGAGTTTATGCGTCCTTCATGTCATCTATACTATTATACGTAGAGAAAAA
TCAATAATAATTAATGTTAATCGTCCTTTGTTTTGGCCAACACCTGATTCGATCATGACA
CCCGAAGAAGTGAAAACAAACATTCTCAAGCTAACTCATAGACGACCTAAAGTTCAAAGA
TAATGTTACCCAAGCCATGGCAACCAAAGTTACATTGCTACTGAAACTTAAAAAGCAAAG
GTGGTAATTGATGTACGGAGGCAAATCAAGGTTAATATTGTTTTACCTATCCCTGTCCTG
ATAAGAAGAACTAAACCATTTCTTCAGAAGCAACAGCAAGAGTGACGGTTTGATTTTTTT
TTTTCTCCGGCAGGAACAAGCGAGCCATTTTATTTCTCATAACAGATGGCAAAGAAGCAC
GAACTTCTTCCCAACTCCCAGGCCAGGAACTAAGCTTCTACATGCTGATACAGCATGGGC
ACACACTAAAGTGCTAGCAAGATCAATGGACGGATGAATTTAGCTAAAAAATGATTAATT
CCTACAAGTGCACTCCATAGCTGACCGTCCATGCTACATAGAGGATTCATCTCCACGACG
AGCATAAAAATGGAGGAAACTACACCCTACAACTCTCTGCATCTCAGCCACTGGAATGTA
AATTTAGATACCTGCAGAGCAAGCAATACCACCGCTCAAACACATACCCAATAGCGGCCC
ATCTCAGCCGCACTTTATCAACCCTGTTCAGTATCTGAGCCCTTTCCACTGAGAGCCCAT
GGTTTGCCTTTAGAAATTGATCGGACGAGAAAAATGAAACAAAAACACTATTTCTCATTA
AATAAAACAAATAAGAACAAATTTTATTTGCTGGGAAAGAGACACGGCAACTTTGAAAAT
TGAAAGAAGTGGTAAACAAGCATTTTGTAAAGTGGGATGAAGTGCAAGTGCTCTTTTTTT
GTTCATATGTAATGTGCTGAAAAGTATATGTATCTAGGCAAACAATAGATTTGCGCATGC
AGGAAGGATTCAACATCAAGGATGTGTACCTGGTGGCAAGAGGTTCGCACAGACTGCTTG
AAACAGGAGCTAGCCAAGCACTTGCACTACATAAACCTGCATCAGTATTCAGTAATCAAT
GAAACAGAGCATTTATCTACCGTCCATCAGCAGCTGGGACTCCCAAATTCAGTGGAAATG
GGAAATGTGGAATGCAGTCATATATTTTATTTTATCGAAAACTCCCTATTAAGTGTGTGT
TAATCATTCATTAGCAAGCCAATCATAATACTATACCATAAGCATGGCAGCTATTAACAA
AGGAAGCAAAAATCAGAAAACACTAACAATGATCACACACTGAGCTCTGTAAGGCTGCCC
TTGTAAGACGTAATGTTTTGGGAAGTGCTCGACACCCTAAACGGGGTGTGGCTATCTCAT
TATATAAGGGTACCCAAGGGGTACAATACAATATACAGTATATGCATAGAGGGCTACGTA
TATACAGTCTAACACCCTCCCTC