Contig Data
morexGenes
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Map Locations of contig_2550871 (2782 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_2550871

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38604 1 1554 bp MLOC_38604.1 Available Available LOC_Os01g58580.1, FRAME:-2, EVALUE:0.0, 13101.m06220 protein ICE-like protease p20 domain containing protein, putative, expressed





CDS Structure of MLOC_38604






Contig Sequence (2782 bp)

>contig_2550871 2782 assembly3_WGSMorex_rbca.fasta
GGGGCGGGGAGGGGGCGAAGGGAAAACTGAAACCTCTCGTGCACAGCTCATCGTAGAAAG
AAAACAAAGCACAACATCAATCCATGCTTCAGCAGATGAAAGCCACATGAACATGCTCAT
CACTGCAGTAGAGCCCGGGCTGCTGAGTGTATCCTTGCTTGGACAGCGATGCTCGTGCTT
TCATAACGAGATCCTTGTTTGTTATCTTTCCATCATTGCTCGCAAGAATGGCCTGGATGG
CATTACTCATCGCACCGAAGGAGGTACCCCCCGGTATGGTTGCATCTGCTGATGTCTGGC
TGGTTTGGCACCCACTGATGAGGATGCCGTTGTTAGGCGCCCATGACTTTGTCCCGGCAT
ACGCCTCTTCTTTACTGCCCATATCTTGTTCTATTGCTGGCTTGAAAGTCTCTTCCTCGT
TGCCATCAAGCTTTGCCTTCAGGAACTCGTGAGCTAGGGCACCAACCATGCCCATGACAC
CACCTTGATCACCTGATCCACCTTCATGGAACTTATTAAGCATGACTTTCATGAACTTCT
TGATCTTTGGGCTGGCATCCTCCCCGAAGACGTTAAACAGAGTCAGCCGGATTGAGCCCT
CTTCAATGTCATCCTTCCCAGTTTGCTCCTTCAGCATCTCAATAAGTGTTGACAGTGGCA
GCGAGCGATTTTTAGTGAGGCCATCCCCAGTTGGTTGCTCATCCTGGTCCTCACCTCCGT
GGCGGCTATGAGACTCAAATACGTCACGAACGGTTTCTTTGAGGAAGGACCGGAAGCCGC
TGCCAGAACTAGATCGCTCTTCGGGTTCACGAGACTGGGTCTGATTCTGCCTGGTGCTGT
TGCCTATCTGTTCCTTTGCCTTGTCCAGTAGGCCACCACTGTGGCATGAGTCAGAGACGA
TGGTAAAAATGCAACCATCTGGGACCTTCTGCACCAGATCTCTGAAATCTTGATCTGCAG
ATCATAACAAGTTAGGGACTTCTACAGCTGAGAATCATTCATTGGAAGCAGAATGGTTCA
GAAATGTATTTAGAATTATAGTGCAAGGGGGTAAAATGCTTACTCTAGCAAATTTTCAGA
AAATGAACATCAGTTACATGGAAAATAACAGCCAATTAGCTAGAAAATATAGTGAATAAA
CATGCAGAAACAACAGACTGACATATGGCCTAAGCACTCGGCTCGCCGGGAGCCTACATT
CCTCAAATGGTCAAGCATTGGTCAAAGGCCCTGGCAGTGCTACAACGAAGCAAATCGGAA
ACAACACGGCCACTAAGCTGCAAGATCTTGGGAATTACTACAACCAGAATTCTGTGCAAA
ACATGCACTATACATAGTAATGTCACTATGCGAATGGTAAGCACATATATGCATCTTTAC
AACTAATTGTTATCCCCTTTCCTATCCTCAATAGTTTCAGCAGTTGAACTGCAGCTCCAA
GTTATCCTAGCCGAACCATTTACGCCATATATTAAGTTCAAACTTCACCAAGATCATCTT
AAACTTACTGCAAACAAAACAAATGAATAAATGAGCCAAAAAAATGCCCATTGAATTCAT
CTAGTATTTAGGTAGGGCTTAATCCTGGATCAGATCCACATCACATCGGCGTTCACCTGC
CTCGATTACTGTACTGGTTTCAGATCTGAAGGCTGTACTGGTTAACTAATCCAACCGTTT
CTCGATTACTTCGGTAGAAAGGAGAGAAGCACACATATGGGGCAGGTGATGCTGATCTTA
TCCCCGATCGCACCTGTGATGAGATTCATGTCGCTGGGCACGATGCACTCGTCGTACCCG
GTGTCGTCGTCCTGCCCGGTCTCGGCCGGCAGCCGCGTGCCGTGGCCGCTGTAGTGGAAG
AAGAGGAAGTCCCCGGGGCGCGCGTCCCCGACGAGCTTGGCCAGCGCGTGGCGGATGTTG
GCGCCGGTGGGCTGCGGCCCGGAGGAGCCGCGGTCGAGGAGGACGGTGATGTCCTCCTCG
TCGAAGCCGAACCGGTCGACGAGGCAACGGTGCATGCGGTCAACGTCGTTGTGGCAGCCC
TTGAGCTCGGCCTTGGTGCCGGGGTAGTTGATGCCCACCAGGAGCGCGAGCTTGCGGCCC
ATCGCGGCGATACGCCGGCTGCGACGTCGGTCGGGTCGGGTGGCCGGAGGGGAGGACGAG
GGGGTGGAGTGGGTTGGGTGCGGGTTTCGTCGGTTGCCGGTGGTAGTGGGGGAGAGGTGC
GCTGCGCGTATTGGCGTTTCCGATCTGACGGGTGGGGACTCGAGGGACGGGATTGGAGCA
GCTGTGCGAGCCTGGAAAGTGAACGAAAACGATTGGACGGCGTCCGTCCACTCGGCCTGG
TCGGCTCGGCATGACACGTCGGCACATTTCCTGCTTGCAAATTTGTGATGACTCACGGCT
CCGAGAATTTGCTACTACCCATCTCTCGGAACGGATTTTTTTTTAAACAGGCGCAAGCGG
CGTACATCTATTCTTATAAATGTATATACTTTATTCTTATTTTTATGAACACCTTCAAAC
TAAGCTGGCATACAATCTTAAGATTTTATGAAATCATCGTAAACATCTTGTAGTCGTTGA
AAACGTCTTCTCACTAAGAGCAAGTACAATAGTATAGTCAGCTGCTGGCTATAAGTCATT
GACATGTCATCTATAGCCCATCTTATAACCAACATGTACAATAGTTCATTGCAAAAGTGT
ACTACTTCTTTATTATATACTCCACCTTTCATACTCACAAAATGCTTAGGAGCACGTGCT
AGAGCTGGCTCTTAGCTAAGAG