morexGenes - Barley RNA-seq Database

Contig contig_2550535

Source Contig contig_2550535

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_2550535 (3592 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_2550535

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38465	1	202 bp	None	Available	Available	None
MLOC_38466	3	1826 bp	AK370207	Available	Available	None

CDS Structure of MLOC_38465

CDS Structure of MLOC_38466

Contig Sequence (3592 bp)

>contig_2550535 3592 assembly3_WGSMorex_rbca.fasta
CGCGCCCGGCGCCTCGGGGGCGCCCCAGCCATCGGGGTTGAAGGGGACGACGCCCACGTC
GAAGCCCATGATCGCGGCGGCAGCGGCGCGTGTGGATCCGGAGGGAGGTGGCGGCGCGAG
GGGCTGGGTGGGTTAGGGTTGCGTGGGACGCGATGGAGGAGGACGGGACGATGGGGCTTT
AGGGATTGTGTAAGCGAATATTTATTTTCTAAGGGGCCTCTACCGGGCCTATGGCCTGAG
CGTGTGCTCCGTGGACTCACGTGTCAGCGTCCGATCCCGGCCCGTTAAGAACCTATCAGA
TCTCTGTTATATAGGAGTACTGTATAAGAATTAAGAAAGAAATCAGATCTCTCAACGTTG
GGCTATGATCTTTAAAAAAACATATTTGAAGTGATTGGCAGTGCTTGGATTTCCTATAAG
TTCAGAAGAAACGTTCTCCAGTTAATATCGTATACGCTAGTTCAGAACATTTTTTGAAAT
CATGTCATCAACACATTTGGAATTCAGCAATTTCAAACGAAGCCGCTAGGGTTCCAAGGC
ACCATAGACTAACACACCAAACCGGACTACAGGACTCCATGAAACCACGCAGAATTCAAA
CAGACAATCTTACATAGAGGAGAAAACATCACAGGTTTCAGACAGCAGGGAGCAGACGGT
TCAGCACGGTACCATCAGCGCTGCACCGCACTGCAGGAAGGAGAAACTAGCACAGCACAG
CACAGCACCAGCATAAATTTCAGGCTCTCACGCTTTTATTCTGTCCGACTCTGGACAACA
CTCGGTGCGACACCATAATGTTCCCGGTCCCATATACCGAATTCGTTACAGGCATCGACA
GCCATGGAATGGCATAGCACGGTGGATAACGGCATGTCTGCGACACTTCAGTTCAAAATT
CAGCAGGCGTTACACGACGTCCGGAATACTTATTGCTAGAGCAATGAGGCGGCATGGGCA
TAGCAAATGGCAGAGTTCCGTTCAAAAAAGGACATGGGAGCTACTCGGTGGATTCCTTGT
TCTCGGCTGCCTTGGCCTCCTCGGTGGACTCCTGGTTCGGGGTCGTAGCCTCCGTGGGCG
AGTTGGCGCCCTCTGGAATGGCAAAGCGATGCTTGTGAGGATGGCAAGATAAATGTTCAG
GATTGCTTGCTTGGTATCTTGTAATATTAAATTACCTTCGCTGTCAGTAGATGCATGAAG
GAATCGGCGTGAACGGGCTTGCTGCTGGGTAGGCTGCAAGAAGATCCGAGAAAGATGTAA
GCGACCAAGTAAATTCAGTGTAGCATGCAAGTTAATTTCATAATTATTACCAGTCAGCTC
CACAAGCAAAGACTTGCTAACAAGAATGAGGTGACAAAACGTGCAATTGACACTGAATCC
AGTTTAAATACTGGGCCAAAAAACTGGATATGTGATCTATTGGATTGCTAGAAAGACCCC
CAAATGCGCAAATGGAACAAATATCAGCTGGTGCCAAACAGAGAAAATATCAACAGTAGT
AGTGTCGTACGTTTGATAGCAAAATCAGCTCCACGAGCAAAGAATTACTAACAGAACTAT
GGGGGGCCGGTACCTTAAACTGAGTTCAGTTTAAATACTAGGCCAAAAGATGGATATGTG
ATCTATTGGGTTATTAGAAAGACCATCAATGAAACAGCTAGCAGCTGATGCTAAACAGAT
AGAGTATCAACAGTGGTATAATACAAGGTAAGCACATTCTTGCAAACAATGACTGTCAGT
TTTAGCACCTGTAATTTCGGTCGAAGTGCTTCAAGCGGCCCTTTAGGCTTTTGAGGATGT
CCTCCTTGCTGCAGGAAACCAAACGATCAGGTGAGCAAGATCGCATAGGAGTTGCACTGC
TTCCTCAAAATCCATTTAGCTTTCGAAAAGAACAGTACAATACCTTTCCCAGAGCCCAAT
CAGCAGAATCAAAGTAAGCTCGCTCATGGTCCTGATAGACATTTTAACACAGATGAAACT
AATGGACATGGAGCTAAAATTGATCTAACTTCCCTGACTGCTCTATACATAGACGACATA
ATAAAATGACTAATATATTTAAGGCTTTCTTGTTGTTGTTCATACCTTGGATATGAGTGG
TGACTTTTTGGGCAGTACTCCTCCATACTTTTTCTTGATCACTGCTTCCTGCAAATATTC
GGTCAAGTCGGATTGTGCTTGTGAAATATATTTTTGACAATTTTATAGTAGAACGTAAAT
TCGTAAAATCGTACAGATGGAAACATGCAAGCACGCAAGGTTAAGCATTACACTTGTTAA
CAAAAGAAGATACCTCTTGCTGTGCTGATGGCATCTCATTTCCTTTATTCTGGTTGGCAG
TTTCCACTTTCACATCAGAAACATCTCCTTCAGGCCTCACCTGGCCAGTCGTATCATCAG
ATGGCTTCTCCGACATACTGTAAGAACGGACGCTCAAACAAGCTACAACGAGATAGATTT
CTTATCAGATAAATTCATCTCAATGCCATCAAAATTAGTAGCCATAAAACACACCAGGGC
ATATACAAACTAGGAATGAATCTGAAGCATATTCTGGGAAATATATTGACATTTCAACCA
TAATAGTGTAGCAGTACAAAGAACATGTTTACATAAATAAGTACTGGGAAGTCAATGTAA
TAAGACATGCACAAAATTTACTTTGAAAAAATGGAGAGGTAAATAAAACTGTGTAAAACA
TCCCGGGGTATCTTCATTTTGGAAAAGGGAACCAGACAGCAACTAAAACTGGTCCAGTTC
TTTAACAGGTCTTGCACAAGTGTTTCTTCTAAGTCATAACGTCGAACCTAACACCGGCAT
GCCATCTTGAACAGGGTGACAAGCAATAACTGCAAAAGTGGCAAAGTTCTGAACAAGGCT
ATTGTCCTTGACAGGACTGGATGAAGGCAGTCAGCCTGAGCCCAACAAATGCACATAAGT
ATGCCCCAGGACTTCAACAGAAGTACCCAAAGCCAATAAGTAAGAAAGTACAGCATCGGC
CGATTTAACCTCTCTATGGCAAATTAACAGTTCAAGAGTGCTAAATGATGTAACTGCAAA
AGTAGCAACGTTCTGGACAAGGCTATTGTCCTTCACAGGACTGGATGAAGGCAGTCAACC
TGCACTTGATAAATGTTTGGAGCCAACAAGCAACAAAGTACATCACCAATGATTTAACCT
CGCTATGCATGGCAAATCAACAACCAAGAGCGCTAGACGATACCATGACAAGATCTGCAA
TCGTTTGCGTCTGATGCATGACCTGCCACACAATCCAAGTGCAGAAAACAGCGGTACCGC
GCACACGACGAGTCGAGCTATGTACGACCTATGAGCTACTCTATCGGCGGCACGGGCAAG
GCCTTCTAGCACAGACGTGATGAATCAAGCTCTGGGGCGTAGCGTGGTAACTCTGCCGAG
ATACCGCCGGTCGAGGGAATTTATGGTGCCCCAAAATTCCGCCCGCCCGTTCCTGGCGAG
GCGCTGGAAGAAGGCAAGGCACGCGGCCGGAGCTACCGCCGCTCGTCTGAGTGAGGTCTA
CCGGGGGCAGATCTAGGCGGCGCGCCCGAGATTCGCGGGCGGCGGCGAGGGC