Contig Data
morexGenes
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Map Locations of contig_2550487 (5594 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_2550487

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38450 1 1029 bp MLOC_38450.1 Available Available LOC_Os09g37400.1, FRAME:-1, EVALUE:2e-53, 13109.m03710 protein OsSAUR45 - Auxin-responsive SAUR gene family member
MLOC_38451 1 2146 bp MLOC_38451.1 Available Available LOC_Os03g42220.1, FRAME:+1, EVALUE:0.0, 13103.m04543 protein T-complex protein, putative, expressed





CDS Structure of MLOC_38450






CDS Structure of MLOC_38451






Contig Sequence (5594 bp)

>contig_2550487 5594 assembly3_WGSMorex_rbca.fasta
TTAGAAACGGAGGGAGTAGTTTATATGCAAGTAAAAACGAAAGAGAAGCATGGCTGCAAG
CCTGCAACTGCTGGTTGTTGCTTTGGTGATCGCATTGCTTTACATACAACTTTCCTTCTC
CTATTGTCTGTCTTTTTTCTTCTTTAAAATCTAACTATCTTACGCTATCCAGGCTCAAGA
CAGAAGACATCAACAGCGTCTACGCCTGCCGTTCCTCAGCAGCTACAAACAGCAAATCTG
ATTGCCGGCTCCAACGGTAGGCATCACAGAGCCAGTGTAGTGGCAAGGCGTCAGCATAGA
GCTCAGCACCGCTTCCTCGACCGCGGCGGAGGCATTCCTCCTCAGCAAGCACATGATGTA
CTCCATCACCACGGCGTCGCAGGGCAGCGTGATCTTGCCATCGGCCGCGGAGCCAAACTC
GTCCCGAGACATCCTCAGGAGCTCCCCGAAGACCGTCGTGCCGAGGTACACCAGCGGGAC
CTCGAAGCGCCGCCCGTCGGCCGTGTACATGACGCAGTGGCCCTTGGCCGGTGAAGAAGT
GCAGCAGTCTTCGTCTTCCTTGGCCGACCCGGTGAGCCTCTTCCTCCCGAGTGCTTCCAC
CCTCTTTGCCAGCTGAGCAAGTCTCTTGGCACCGGCCATGGTCGCTTGGTTTTCAGCTGG
AGATTTGGTGGAGTATGTGTGATACGGATGTTGTGATGCTCAGCTAAGGTGGTGGTGGAT
ATGTGTGCCGATCAAGTGATGCCGTTGAGCTGTGCCGTTTGCTGGATTTATAAGCGAGAC
GAGGGGAAGGGCATCATCGTGTCGGCGCAAGGCAAGGCCATGTGATGGGCGCATGCGGTG
TTGCGGTATGATTAGTTTGGATTAGATCGCGGCGGGGCCAAATGTTTGGCGCATCATTTG
CTTCCATATCGTTGGTGTTGAAACTTCAAAAGCATAGCACATGATGTGTTTGATATTCGG
CATCTCACGTGGTGACAAGAGTACATATCTTGACTACGAACCAAACCAAACATATCTTGT
GTTATACTCCCTCTGTCCAAAATAACTGTCTTAACTTTGTACTAGCTTTAGTATAAATTT
ATACTAAGCTTAAGACACTTATTTTGAAACGGAGGGAGTACATATATATACATCACATTT
CCAAGCTGATCTCATCTGTCGTGTGCTGACTGTTTGCGTTCCAGTGCATGTATTGTATTT
GCAGTGTGGACTTCCAGTATTAATTCCTTACTGGACATGTTCATCATTGAGTTGTCCAGC
TTTACGGAAACTCCTTTGTTCTGAACTTGAATGTAGTTAGAGGACATGTTTTGGTGTAGA
CCAGAGGAGGCAGTTTTATGTAAGCTATGTGTGGTTGATAACTGAACGTGGTTCAGTAGA
GGCATCTGCTCATCTGATAATGATCACCGGATATATGAAAAGATACTCTAGGAAGAACAG
AAACTAATCAGTAACCCGTTGACAATAAGATGCCACCGTCAAACAGATCAACAATTAAAG
ACTCTGGAGCTTAAAGATATATCTCCATCTCATTCTCAGGAGGGCAGCACTATATACTTT
ATCCCATATTTTATTTTATCAAGTTCATAGATTGTAATTAATCTGTATCTAGTTGCAAAC
AGGACTGGATCCGATTTCAGCCAACACACTGATAGTCAGGTGTCTCTCAGCTGGCATCCA
ACAAAGTACTGTACATGAAACAAGATGGAAAACTCACAGTTGCAGCAGTGCAAGCATGTT
CCGAAACAAGCGCGCTCCGCATGCAAAGATGCACTTAAAACAAGGTTACAACTTACACAT
CACTATATTTTCTAGTGGTAAATAACTCAAGAAAGCCGAAGCCACTCCCTACAGAACGCT
AGCTAGTCCAAACAAGTTGCAGTCGCTTAGGGGTCAGGATTCGACGACAATCGAAATGGA
GTCAACTTTAAAGCAGCGCGGACCCACGATCACCCAGCCACAACTCGGCAAACCATACAT
AAGATAGCCCAGTATCAAAACTGCTCGCGAGAATCACATCCTGTCCTCTCTCCTGCGCGG
GGCGCAGGTTATGATCTCGTCGACCCTCAGGATCATCTCCGCAGCCTCGGTCGCGGACAG
GACGATTGCCTGCTTCACCTTGAACGCCTCGCAGATACCACGCTTCTGCATGTCTCCCAG
CTGCACAACAGGGGACCATGTTAGTTCCAAACTCCCTCGGGTACAGGTGAGATAGAAAAT
CGGTATCACGATGAGCTTACCCCGCCGCTGATGACGTCGATCCCAATAGTGCTGTTCTCT
TTGTGGTGCTCAGCTCGGAGCTGGGAGATCAGCTCGGCACTATCCAGGCCAGCATTATCA
GCTATGATTGTTGGGATGGCTTGCAGGGCACGCGAGAAAGCATCAATCGCATGAGATTTC
TTCCCAGGGGTCCTCCTTGCAAGTTCATCCACCTCTTTGGACATCACCATCTCAGGCCAT
CCACCGCCAAATATGACACGCGTGTCATTTACTGTCTGAGAAAGCACACATAGGGCATCA
TGCAAGGACCTCTCAGCCTCATCAAGCACATGCTCACTGTAGACAACAAGGCACATATTC
AATGTGTGGCCAAATAAAACAGAGTGACTGAATAACACAATGCTATCACTGCATGATAAG
GAGCTGCACAAATAAGACGCACCTCGCTCCTCGCAGGACAATGGTGCAAGCTTGCCCCAT
CGCAACCCCGGAGAAATGAATCAGCCTGTCCTCCCCAATCATAATCTCTTCGATGAGCTT
GCAGTGCCCAAGCTTGACAGACTCTGGGTTATCAAAAGTTGATGCAATATCGCCACCCGT
GACAAGAGCTAACCGCTCGATGCCCTCAAAGTCAGCATGCTCAACTGCAAGGATGCCAGC
ATCAGCAAAAAGTTCTTCAGGAAAGTTGTAGATTAGCTGCCTGTTGACAAAGCAGTTGAT
CCCGTGACCAATGATTTTCTCAACTTTCTCTCTCATTTTCTGCTTTTCAGCAGCTTCAAT
ATCTGCAACCTTAGACATTGAATCCACCCGGACACGTGCCCCATAAATCTTAACTTTATC
TGTATCCATAGCGGTGTTCGCAACCAAAATATTAGCGTTCTCAATCCGCTTTGGTTGACC
AAGGCCAATCTTCTTATCAAGGATGAACCTACCAAACAGATTAAGAATGTTAAACCGATA
CCAGTCTGTTTGGAACTGATATAGGACCATAATATATCTGGGAGACAAGAGATCAAGGTT
TCCCATAATATAGTTTGTGAAAGAACATACCCTTCGTCCAAAAAAGAATCCTTGAGAGAT
CCTCCAGGTTTCTTCAGAATTTGGATTGATTCCAAGTTGGTGCTACCCTGCCACCAGTGA
ACAAGTGTGATGATATCAAATCAATGTCTTACCAACAGAATGTAACAATGTGAACAATTA
ACAAAGAACTACTGAACTAGACTTCAAACAACATCCCACATATAGAAAATATATGGTATG
AACAACTTCCCCCAGCCCTTTTTACCTTAAGCCTGAGGACGGCATCAACTGCAAGTTCAG
CAAAATACTCCTTGTCCTGGGAGAGAATTTTCGAGCTAAGCGTAGTCATGGCGATGTTCA
TGAGATCTGATCTGAACTTGTCTGCAGCACCAATGAAGGTTTATTGTGAGAAGAATATTC
CTGGTGGTGAACTCTTGATATAAACTATAAAGCATAATGAGTGCAACAAAATTTAAAGAT
CTGACTGAAAATACTGCCAGGTCCCAACTAGGACAACCAATGATACCAGGTCCTATAAGC
AAGTATTCCAGGAGGTTAACATAAACCTTGTTCCACACAAATAATAGCTAACAGAAGATA
GTGCTTAAATATAGTGACAAAATCATATATGAGAAGGTAACTAAATAGGTGACCTGTATT
ATCTTTGTTGTCCATGGTCTTCTGCAACAAAGCATTTCTGGCACACTCAGCAGCCATTCT
GTAACCTAATAGTTCAGGGAGATGACAAAGCATTAGAGATGTTCACATATAACCAAATGA
TTAGCTAAAAATTGCAAACAGTGTGTGTCTCTTTTTTCTTTGAAATATCATGTGTATCGT
TTCTGCATAAATAATTAAATAAACAACATAAGAAATGAAAGGCAAACATGAAACTGAACA
GAAAACAAATGGTCGTAGTTCTCCATTGACAAAATGGCATCAATGCAGAAGTGCACTGCT
TTCACATTTTGTTTTTGCAAGATACTATCTTGTACTTCTAAAATGGCATCAATGCAGAAG
CTACCTAGACTGAGGGAGCTGCTTTTTAATCATTCAAGCATGACCAATTAAAAAAAACAA
GTATGTAAGCATGAGATCTCATTTTTCAGACTTGACATGTCCGACTGCTCTAGAAAGTGC
TGGTATTGAATCATTACTTACCCAAAACTCAGTAACATGTATTGAAGTAGTAATTAAGAT
GTTGCACAAATTTTAAATGTGAGCCTGTTAGGGACAACATTTTAGATAAAGCATGTATAA
ATAAGGATTACCTGCAATAATAGTCATCGGGTGAATCTTCATGTTAACCAACTTCTCAGC
CTCCCTCAAAAGTTCTCCGGCCAAAACAACAACAGAAGTTGTTCCATCACCAACTTCATC
ATCTTGAACTTTTGAGATGTCTAAGAATCATCATTAAGGACTACATGTTGTTTCAATTAG
GGAGAACGTCCATACAACCGAGTAATTAAATGAGGTCAGGAAAACTTTAAAGAAGCCTAT
ATTGCCAGATCTAGAAACAAGCATCACCTCAGCATGAACATACACAGGCAATAGACTCAA
ACAAAAAGGATACCAACAAGGACCTTGGCAGCAGGGTTGTCGATGTGGAGGGACTTGAGA
ATGGTAGCCCCATCATTTGTAACGGTGACACTCCGCCCTCGGCCAGTCGACTGAAGGATC
TTGTCCTGGACATAAACAAGGTATCATGTAAGGGAAACACACTAACAGTGGCATTCGAAT
GGCTGCCATCTTTTGTCCAAATGCACATTTTCTCTGGGAACAGCACACGCATACCATTCC
TTTTGGCCCCAGTGTGGTCTTGACCAGGTCCGCGATCGCCATGGCACCAACGAAAGATGC
CTGCCAGGAGACGAAACCGAATGAGTTAGAACCCCATATTAACAAAGAGGCGGGTTTTTT
TTTGCGAATTATATATAACAGAGAGGCTGAACAACGATTCGACAAGGCAAGGAATCTACA
GCCTCTGCGGTTTAAAAGGGGACGAGTAAGCACGTTGCACGCTGTTGCAAAAGCACATTG
CAATGGCAATATGGCATCGGTCAGCCACAGTAACCTACATACAGATCCTATGAAGCCAAA
CCACTAGGCGGCGGCCGCGGGGAACGCTCAGGCTCCTGATCTGGTGCTTCGCGAACTAGC
CCTTACTCAGCTCTCAGCACCATCGAGCGAACGAACGAACGGAACGAACTAATAGAGCAA
CAATGGAACCGAGCGGATCAGAGAGGGGGGTTTCGTTGGTTGTCTCACCATCCTGGCGCG
CTCGCCCTTCTCCTGTATGGCGTCATCCTTGAGCACCCTCTCCATCTGCCCAGCCACAGA
AAGAGGGAGAAATA