morexGenes - Barley RNA-seq Database

Contig contig_2550441
Source Contig contig_2550441
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2550441 (7289 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_2550441

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38431	2	1346 bp	AK356628	Available	Available	None
CDS Structure of MLOC_38431

Contig Sequence (7289 bp)

>contig_2550441 7289 assembly3_WGSMorex_rbca.fasta
AAGAATTTTGAGACGGAGGGAGTATACATGAATAAAAGACAGAAAAAAAGATGATATGCA
TCTTAAATTCTTATAAAAAAAGCATGTCATTTGATGCTTAGATAAAATATATTTTCACTA
TGTTTAAACTGATGGTTTTTTAATATGAAGAATTGGTCTACGTTCTACATAGAAATAAGA
TTCCGTTCCTACAAACCAAAGAGCCGCAAAGAATTTATTTTTCCTATGAAATTTTTATCT
TCCATTCCCTTCATTCTTAAAGATAAGTCCTTAATTTTTTTTATTATAAACTACATACAA
AGCAAAATGAATGAATTTACATATGTCTATATATATCCGTATGCAGTTCGTAGTGAAATC
TTTTAAAAGACATATATTTAGAAACGGAGGGAGTATAACCCCTACCCAATTACCGTAAAT
CAAATATGACCTAAGGTTTTTTTAAGATGGTGTTGGTCAAGTTTCTTTTTATACTTCAAG
ACCTCATTTATTCATTTATCAAAATGGTTGTACCGTTACAAGCATGTTAAAACCACGACA
CTGCATCTAACCAAGTATTAGGAGGAGAAAGCCTAGCCAAGGTGGCTAGCTCATGTGCTA
GATCACCCGAGTAAACTCAAGAAACACAAAGTAACAATCATTAAAAATAGCACTAGCACC
TTTTTCCAACCTCGGACTCATCTCCCTTTATATTAATTGCTTAACGGAAATACATCAGTC
GGAATGTTTGGACAGAAAACTGAAATCTAAAGTAAAAAAAAATTGAAAAGGGGAGAGTGA
GTTGGGGCATCAATAGAAAACCCGATCTAGATGATTCTAAAAAGAACCATCCACCACGGT
ACGAAAACCTATTGACACTAACCGCCCATCCTTAGCAAAGTTTTAGCAACAACAAAAGCA
AACAGGGAACTGCTAACCACCTAGCAAAATGAGACCACGTGAAACTCAGCACGCATCAAA
CCCCTGTGAGGACCATTACAGACCAACAAGACAACAAGGCTTCATTCATCTCAAGCTCCA
GCATTGCCTCCCAGCACCAACCTGCCCCGCGAAGTCGAGCGATCTGCCAACGAAGCCACA
ACCTGCACCATCCCCTGAGAGCGAGACCAAAGGTCCCCCAAACTGACCAAGCAGAAGCAC
GCCCAAAGAACAAGTGATCAGCCGATTCAACATCGTAGCAAAAGGAGCAAGCAGGGTTCC
CATGCCAATTTCTTTTACGCATATTATCCCGGGTAGGAATCACATTTTGAAACAGTTGGC
AAAGAAGTTTTTTTAATTTTCAAAGGAATCTTGGCTTTTCACACCTATTTATAATCACAC
CACGACAAGTCTTTCTCTAACCACTCATACACAAACTTTGTAGTGAATTCGCCCTTTTTC
CAAATATCCAAGTTACTCTATCAGGAGAAGTATTTAACGGGGCTCTTTAGCCATATTGAC
AATTTCTCCCCACTAATCTTCGAGAGCAGCAAAAAGACTACGTATGAATGGCATCACAAA
AAATTTCTTAGCAAACTCATAAGTATACTCATGGTCATGAAAAATGTCAAACGGAATATG
ATATACTATTTTCAAGGGGACATCAAGCATCTAGGGATCATGCTAGACCCTGGCTAAATC
CCAATTATTGATTTCGATCACCCTACCCTTCATATATACCTATTTCACCTTCATAATTGC
TTTTCAGCAAGGGGAATCATTAAATCTTGCCTGCACATTAGCTATTGTCTTACGTTTGAA
GTATCGGGTGCGAGCGATACACTCCCATAGGCTATCACAAGACTCAAGCCTCCACCACCA
CTTAACTATGAAGCTCACATTCTGTTTGTGGAGGTCTTTAATACCCAATCGACCAATTTT
CTTAGACTGACAAATTTTGGTCCACTTGACCATATGATATGCCCACTTTTCCCTAGCCTT
TCTCTAGAAAAATCTTCTACGATAAGCATTCATTTTCTCGATGGAAGTCCTCTCAAGAAG
AAACATAGGCATAAAATATGATGGAATCTCATCAAGGCTAGATTTGATTAGAGTAACCCT
AGCCCCTGAGGAAGCGGCATAACTCATCCAAGCTGCTAGTATCTTGATCATTTTAGCATC
AAGGAAGTCCCAATCAAAAGTCTTAAGCATAGTGAATGTCACAAGAACTCCTAAGCATTT
CATGGGGAGTTTTCTAACTTGACAGCAAAACACCTCAGCATATATTTGATCAATGTTATT
ATCTCCCTCAATAGTAAAAACCACAATTTTTATCAAAGTTAATAGCGCTAGCATGTGAAG
ATGAGTGTCCATCATGCATCGTTGAAATGATCATTATGTATTATCATAATTGGTAGCAAT
TTTGTTACTACCAACAATGCACGTCAAAATTCATGGCAAGCCTGTTGTTAGGGCCACTCT
TGTGAAGGTATCAGAGCAAAATCTTAGTTTTCTCCTTAGTTGATGCAATAAATTTTCCAT
TTTTCATGAGAATACCTACTTTGTAATAAGTCAACATCCATATTGAGCTTTACATAAACT
TTTATCAGTTTTGTCCAAACCCCCGTTCTAACTTTACTCCTTGGTGAGCAAGCTAGACGA
GAATTTGCAGCAAGGGCTTTCACAAAATAATAAACCTGAGCAATAGATTGACATTGTTCA
CCGTGGAGGAATTTCCTGAGTTCCCACCGTAAGGACCAAGTTGTGGTTGCTATAATTTCT
TTAAAGCTTGTCTGTCCCATTATACGTACCTCTTTATCTTGGATGCTCATCAAGTATCTT
AATATAGCTTCACCAGCTCGGTCCATACGACAAGATTTCCTATTTATTTCACCAAAACCT
AACAAGGTCCATACGGCCATGGCCACTATACAATCAAATACGAGATATGTTTTTTTATTG
ATAGCAAATATGAGGTAGGTTTTGATTGTCTATGAGTTGACCAATGCCACCTGAAAAAAT
TAACCTAAAATGGAATTACTAAAATGAAGTCGTCACGATAAAAATTTGTGTAGGAACTCA
AACAAATACCCAAACAGTTGGTGATAACAAAAAGAAAGGTGCGTTTTCGCCACCACTTGA
ACATACCACCTTATTTGTTCCACAATACTCACCGTTCCAAACTTTTTTCCCCTAGAAAAA
CTTCCAATCTGTTTTTGCCGATATAAAGAATACCAAAGTAATACTTCCTCCGTCTTAATT
TTTTTTGTCTTAGATTTGTCTAGATATGAATATATCTAGTCAGTTCTGGTATTTAGGTAC
ATTCATTTTTAGACAAACCTAAGACAAGAATTTTGGGACGGGGGAAGTAGAAAATACATT
CAGATTTCTAGACCACCTAGTGACGACTACAATCATCAGACCCCTTTTCGGCTGAGTAGG
ATTCGACAATTGCTGAGTAGGATTCGACAATGGGCCTGAGTCAGTGATTCGAAGTCAAAG
GCATAACTTCAACACCCCCTTGTGGTACTAAACAGTGGGGAAGTCATCCTGCTCAGGCCT
AATGAGACAAAACAACAACCATCACAGATGAAGAGAAGTATACATGGAAATGATCTGTTT
TGAACTCGCCATGCATTATTTTTTTTTGAAAAGAAAGGGGTTTCCCCCTGTCCGATTTTA
TTAACGAGGCAGCAAAGCAAACTGAGCTACAAGATCAACATTTACCACCAACTAAAAGAA
AACATCCATTCTAGACAAAACACTCAGGTAATGTCTGGTGGAGCAACTAAAACAACAGCC
ATGCATGTATTCAGGGGAAAAACTCCTTGGACATGAACTTTATATAACTTTTGGTTTTAT
CAGATATCTTTGTTGTGTAATACTCCCTCCGTCCCTAAATAAATGTCTCAACTTTGTACT
AACTCTAGTACAAAATTGTACTAAGCTCAAGACACTTATTTTGAAACAGAGGGAGTATAA
TCATATCATTTGCTAAAAAGAAAAATTGTTTATGTATGTAAAAAAGTTTTGTTTATGTAT
GTAAAAAAGTTTGAGCAACAAATAGTACACAATTTCTGTCAACGTGGTACTTTAGTACTA
CAGTGCTACTGATCATAAGTGCTGCAACAGAAAACAAAACAAAATTGAGAAACTACGTGA
TGCAGAAAATACAGCACAGAAGTAACATCACGTTATTCCATATGTTCTTTTACTTTCTCT
AGCTGGATGAATCTTGCAAGGCTACACCGACAACAACAACAAAAAAGAAGTAACAGAAGG
AACAATTTACATGCTTCTTGCACAAGCATTAAGCACCAGCGCAGCATTTCCAACTCTCCA
AGGGTGTGCCTACCCACGTTGACCAGCTCCATTGCAGAATGAATCTCAAAGTGTGCCGTC
CCCCCTATCACCCTATGGGATCTCATCCTGGTGGTACAGGTACAGGCCGAAACCAAACCG
CGCACAGGCCTTGCTGAATGCTGCCTCCTCTGCAGCCGCAACAGCGTCATCGTTGCGTCC
CTGGTGCACCTTTGCCGTGCCCGTCGCGTCTCTGAAAGCCTATACCATGCACATAGGAGT
GAGTTAAATTGCACGAACATAAGAAGAAAATAAAGGTCGTTGTATGTTAAAATTATCAGC
TAAATAAATTCGCCCATGTACTTCAACAATTCCCACTTTTTGTTAGCTCAAAAAGTGGAC
GTTTGAAAACTTTTAGTGGAGAATATGTATTGGACAGACATATGCTCCTTCTGCGAAAAA
GAAAGAGGAGAACGTATACCTCTCCATCCGTTCCTTTCAGAATCACTCGATAGACCACAG
TCACAGTTCCACTGTTGGAATAAATAACATCACGAACTTCACCACACCAACCTGAAAATA
TAGGAATCACCGATCACTTTTCTTTACTAAACCTGGTACTTTTTTGTATTCGGCGTTTCA
CATTTCTTTTCCTCCTATTTTTCTATGTGGGTATCTTCCAGAATTGATGTATGATCACTG
TAGTTCAACAATCCAATCTAATGACTCAAAAAATTTAGTAGCTGAAACATGGCACCTTCA
CCAAACACAATGTCAGAAGAGTATAACGAGGCATCATACTGATTCTCTATAACAAACTAC
TCCCTCCGTACCAAAATAAGTGACTCAACTTTGTACTAACCTTAGTTCAAGGTTAGTGCA
AAGTTGAGCCACTTATTTTGGGACGAAGGGAGTAATAGGTAAGGCATGGTACAAGCTGGT
CATGTGTTCTTGATAAGATGGTATCTCTCAATATGAAGTTTGTGAGGACACAAGTACATG
CACCTAAATACAGACTTGGAACTAAAGTTCAATTGAAACAAATAGAGAGGAATCTACAAG
AAAAGTAAATTTTAATCGCAAGTGGACGTTTGTAATTTTAACGAGAAATCACCTGGTGCA
TAAAAGCTCAGCATTCTGTTGGCATGGTACCTGCACAATCAGAGATTAAAAAAAAAGATT
CTGTAAGGGGAAAGGTACCCAACTTTGTAAAAAGAAGTAGTCATAGTAGAAATCCAAGTT
ATGTCAGTACAAATTATTGCCAATGACTGATACTGTATGCCAATGTTTGTCAGGCTTACT
TCCACTGTATCCATTAAAATAAAGGTTCACTGAATCCAAGTAATTCATCGCCAGCTTAAC
AAGGGATATGCAACTACAGCCTTTCTTATCAAAAGACTAGGAGCAGACTGGGAGCAGTAA
GTTAATTATTCCACCTTTCATCCAACAAATCCAACCCGTGGCAAAAGAAAATGCTCTGAA
GCAATCATGTTAATGAGTAGCCAGAACTAGCTTTAAGATTAGGTGATCTAGATAGCAACA
ATCTTTTATCAAATGGAAAAGGTAGCTTGTTGGAATGTCTAGCTTAAGGGGTCTTCAGAT
AGGCTAGACACGTCACTCTTCTGACAAGAGATAGATGACAAAAGTAACTCATACTTGAGT
TGCACTCTACTCTCCTATTAGTTAACCTCAGAATAGTTTCTCCATTGGCTAAGATAGCTG
ATATCAAGGTGATTTAATTGATTTGGCATAACTGAAAGCATACATACAGACACCACTGTA
TCATTTCTCGTTACAAAAAAAGGAGACCGAAATGATGTAATTCAGCTCACAGCTACGCTC
CAATTTAACAGCCACGGAATGATTACTAACTGTATAATGTTCCAGCTAAAAAGACTGTAT
ATGCAAACTTCATTGTTTATCCGACAAATATATGATATTATGAAGATTTAAAACCAGAGG
CCCGCGATCCATTTTAAAAAGCAACATAGGCACAGTGGTGTTAAAATAAGATGATATGAC
AGGAAACACATAACTGCAGCTGTTATCCTTCTACAAAGTCCAAAGTAGCAGAACTCTTTG
GCTTTTTAGGTTACCAGAAGTGTCCAACCTGTCCTTGTCCATAACTTGATCAACAACACC
AAATAATTGACCACTGACTTTAAATACCTTATCTACCAAACCCTGAAAGTGGAACAGAAG
AAAAGTGGCTCAAGTAACCTTCCAATCTAACGGATGTTTCGGACCTACCAACAAAGCAAG
CAACAGCCTAAAGTTGCAGAACATTAGTAAACTATCTAATCACAAGTCTGGTCAATCTAG
TGCATAAGCTAGTACCTAGACTTATTTTATTGTAGGCCAACGGGTAGTTATGGAGTCAGA
CAGGTGAAATTATGCAAACCAGGTCGGGTCTTGTTCACAGCCATCCTATCTTCATTGCTC
CTCTGTCAAATCTAACAGCTCCTAGTTGGATACTTGGATTTCTTTTCGAGGACAACAGTG
AACATAGTAGTAGTATCATTTCAACAGAGAGCAACTTGACAAGGAGTGAAGTGAAGTATT
GTCCGACGTGGGACTTGGATGAGCTACCAAGGTATTAATCCTCCGGTAGAAAAGCTGTGG
CACCACCAAATGCGTTTGCCCGGACCATTTCAATCTGAGAGAATAAACATAAACAAGCAG
GGAAGGAAGATGCAAGTAGCTCGAGCAAAACTAATCCAGCGCTCGTCTCTCTCTAGGACT
GAACCAACATCCGGTAAAATCAGGACTATCTGCTCGGACGCGGCGGAACAGATCGAATCG
AGCAAACAAAGGAGACGGTGGGCGTCGGAGAGGGGAGTTAATGGGTTGGGGCGGGTGTGG
TGAGCGTACCATGGGACGGTGTTGGTGTCGGGGTCGATGATCTTGTCGGGGACGCGCTTG
TTGAGGTCCCTGAGGATCTCGACGAGCGGGCGGGTCATCCCGGTGGCCTTGTCGAGCGGC
ACGACGTAGTTGGTGGTGGGCACCCCCTTCCCCACGCCCCCGTCCAGCCTCGCCACCACG
CGCGCGCCCCTCCCAAGCCGCCGCTGGCC