Contig Data
morexGenes
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Map Locations of contig_2550419 (4098 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_2550419

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38414 3 1637 bp MLOC_38414.1 Available Available LOC_Os01g59080.1, FRAME:+3, EVALUE:5e-48, 13101.m06275 protein expressed protein
MLOC_38413 2 2809 bp MLOC_38413.2 Available Available LOC_Os01g59090.1, FRAME:+2, EVALUE:5e-116, 13101.m06276 protein thylakoid lumenal 20 kDa protein, putative, expressed





CDS Structure of MLOC_38414






CDS Structure of MLOC_38413






Contig Sequence (4098 bp)

>contig_2550419 4098 assembly3_WGSMorex_rbca.fasta
AAAACATGGAAAAAACAGAAACAGGCTCTTGACACTGAATTAATAAGTAAAATATATAAA
AGGCATGCAAAACATCCAACATATATTTTTGTGTAGCCCCGCCATTGGTTTGCGGGGCAT
GAACTTATCGCGATTGTCCTGGAGACCTCATGGTGGCATGGGTGAGGTGCCTAGGCTGAT
AACGGCGACACTTGCGGGTGCTGCTTTTTTTTTAAGACGTCATTGTGATTTTCTTCTTCA
TGTGAGGGTTCCGGATGAAAAACCCTCGCTCACTTTGAAGTCGGCAGTGGCAACAGCATT
GTCGTGTGATAGTCGTATGTGTTCTGCGTAGTTATCCCACAATCTGCTTTGTAAGCTGGC
TATCTCTGCATATTATATCGTTCGGTCACAAACTCTCAGAGCCCGTCTTGGCTCTGCAAC
AGTTTTGGACTTTGTAGTGCTGGTGCACTTTGTAAGCGGGCTACCTCTACATATTATTCG
TTCGGTCATATGCTCTCGGAGCCAGTCTTGGCTCTGCAGCAGTTTTCGACTTTGTAGGGC
TGGTGCAATAATTTTCAAGCGAGTCTTGTGTAGATAATGTTTGAGTTTTGTTGTCATGTC
CCTCCCCCGATAATTTATGTATCGCTTTCATCCATGTGAATCTTGGTAACTACTGTATTC
TTGGGAGTATAACACTCAGTGCTGCTGCTAAAAGCACTACATTGTGCTACTGATTATTAT
AACAAAGGAAAAGCCGTAATACATCGATGCAAGCTATCCTAACAGTGTGTAGTGTACTGG
GCTAGTATCATTATCGAGGTGTTCTAGCTATCAGTTGGCAGTGGTTTGATCCTCCGTCTT
CCTGTTGATGGTGATACCCTGATCCCTCCTCATCGGCGGCAGGCGTTCCTTCTCCTCCTC
CACCTGCTCCAGCAGCACCTGCAGCTCCGCCTCCGACAGGCTCTCCAGCCGTTTCTGCAA
CGAAAACAGTTGATGGTGGTCAGCCACGGCTCACACTTGAACCTCGTGCCAGGCAGAGAG
TGGCAAAGAAAAAAGGGTCACTAGCTCACCTCCATGACTTGCTTCTCGTAGTTCCTGAGC
TGCGTGGCGTAGGTCATGTCCTTGTTGGCCACACGGATCATGTAGGAGGAGATCCACCCT
ACCGTCATCCCGAGCACGATGAAGAGCTGGACCACGTTGCCGGCTTGCAAGGGGTCGACG
CCGAGGAACTGCGCTCGGTCAGGGACAGACAGGTTCGTGATCAGGTTCAGGTGAAAAACT
TCTTCTTCATCGATGACAAACCGAGCAGCTGCCGGATTTTGCTAGAGAAATAAAGAGGAG
GTCACCTCGAGGCCGGACTTGAGGCCGTAGCCGAGGAGGGTGACGCCGACGCCGATCAGC
AGCACGTCTTTCCTCGAGTACCCGAACTCCACCTGCGGAAACGCAAGCGGGCGAGCGAAT
TGCCTGGTTAGCTCCGGCGTGCCGCGGAAAGCTGAGCGTGTCGCCGAGTATTTCAGCTCT
CAGGACGCAACGCATGCTGTGCTCTGCTCTGCTCACCTTGTCATCCGTGGCTTTGGAGTC
ATCCACGCTGCTTCTCAGCGCCGAGCGCCTCCTCTGTCCCACGGGCCTCAGCAGCAGCGC
GTTCGATCGCAGCACAGCTTGGCCCTCTGGAGAATACAACAAGATCAATTTGTTAACAAA
TGGATCTGCTCACTGGATTTTGTGCAGCAAGCTCGTTAGCACAAGAAAAGAGCATGGAGG
AGAAGCAATAATACCAGAGTGGCCGGAGTGCAGGCAAGCCGTCTTGCCAAACCGGAGTAC
GCCGGCGGGTGCGGCGACGGCGGTCCTAACACCGGCAGAGACGCGAAGGACGGTGGCCGA
CAGGGCTGCTGGCGCCATGGTTGCGGAGTAGTTCCACCGTTGCTGCTCGGCCGCACACCC
GCGCCTCTGGCTCCCTTTTATCTCACCTTATCCTCGGCGTGCTGACTGCCTGAGGGGGCG
CTGCTCAGCCGCGTCCGCGGCACCTCTCCCGTACACGTACACGTACGCAGGCTCGCCACA
TCGAGGCCGAAAAATGCGAGCAGGCCAAATATCACACTCGTCTGGATAAGAGCGGCCGTT
CTTCCGGCCCTCCCGCGCGCGCGAACCCGTGGCCCTCGCGCGCTCATGGCTTCTTCCTCC
TCCTTCGTCTTCTCCCCGCTCCTGCGGCCTACGCTCCGGCTGCCGGTCGCCTCCTGCGCC
ACGCGCTACTCTGCTCCCCACGCTGTGTCCGTGGACAACGCCGCCGCTGCCACACAACCG
GCGCCTCTCGCGGTTGTTGCTGGCCACGCCCACAGGAGGGAGCTGGTGGTGGGGACGGCG
CTCGGCGCGCTGCTCTCGGCGACTTCGCTGCCCGCAGGGGCGCGTGAGGTCGAGGCCGGC
AAGTACCTGCCGCCGGCGCCGTCCAGCCCGGGCTTCGTGTTCTTCAAGGCCACCGCCAAG
GACACCCCTGCCCTCCGGGCTGGTGATCACTCGGTTCTTGCTACTTTCTAGTTATCTCCA
TGCATTGTTCCTCGTTAGGACTAGTACCTATCGTGCAATCTGATGCGCTCTGTTGATTCA
TCAACTGAGTTCAGCTTCACTCGTGAAATTCAGGCAATGTGGAACCGTACGAGTTCATCC
TGCCGCCCACCTGGAAGCAGCTGCGAGTGGCCAACATACTCTCCGGCAACTACTGCCAGC
CCAAGTGCGCGGAGCCATGGGTGGAGGTGAAATTCGAGGACGAGAGGCAGGGCAAAGTGC
AGGTGGTGGCCTCGCCGCTGATCCGCCTCACCAACCGGCCGAACGCCACCATCGAGGACA
TCGGCAGCCCCGAGAAGCTGATCGCCTCCCTCGGGCCTTTCGTCACCGGCAACACCTTGG
AGCCCGAGGAGATCATCGAGACCTCTGTCGAGAAAATCGGCGACCTAACTGTAAGTTTAC
TAGTCAACTTATGTATAGCGTTGCTGAAACCTGAGTTCCTGATGCATGGGCATAAACTAT
TGTGATGCATGCAGTACTACAGCTATGTGCTGGAGACTCCACTGGCGCTGACGGGCTCTC
ACAATCTGGCCAAGGCCACGGCCAAGGGGAACACGGTGGTGCTCTTCGTCGCGAGCGCCA
GCGACAAGCAGTGGCAGTCGTCGCAAAAGATTCTGAAGGCTATGGTAGATTCATTCCAAG
TATGATTCGCAGCAAGTGCATGCAGGCTTGTCTTGGAGACCTGGACACGGGTTTGCTTGT
TACTCCTACATCTGAACCCTGGGTATTTCCACGAGAGAAACTAGTACTATTACAGTATTA
CTTGTTTTTGAGGCTTGGAACACTTGTAATGAGCTACTTGACAAACTAAGGTCACAATAA
GCTTTGCAATGGCTTATTATAGAGGTTAATCCAATGTACACAGTTATGAGGATAAATTGT
TCTTTTCTTCCAAACACCAAAAATGTCTGTTTTTTCCTACCATCCGCGGGAAGCACCGAA
CCGTGCATGGCTTAGCCCTTGATTCCTTTTGTTCCGAGCAAGCAAGCACCGTGTTGTAGC
CGCGCGTGTTTGCCCGGCAGGTCTGGTTCGAGGTTCTCGGCGCGGAATGATCGGTGGACG
CCGCGGCCATCTTAACACGGTGCTTGCTTGGAGTACCTCGCACGAGCCGTAGGCGACTAT
GACTATCCGGAAGGACCTTCAAATCGTTGGTGTTGCTTTTTTTTTTTTTTTGAAAGATTA
ATCGTTGATGTTGCTTTTTTTTGGAGCATTAATCGTTGATGTTGCTTTTTTAGGATTAAT
GGTCGATGTTGCTGGCTAGAAGCGCCGCAATGACATTGTGTTCAACAAGGCGTCAAGGCC
ACACCGTGTTAGTAGAGGGCTAGTGGATCTGGGTAGGAAAGGAACACATCGCTAGAAGGC
AGGGACGAAGGCAACATGCAAGCATAGGGGAGGCAAATTTGTACATGAAGGGGACAAAGT
TCATATGAAATGAATTTTTTGGCTACAACAATCATTATTATAGTTGAAAAATCAATTTGC
TAGGGGGGTCTAGCCCCCCCTGGTTGGGGAACGTCGCATGGGAAACGAAAATTTTCCTAC
GCGCACGACGCACTATCA