morexGenes - Barley RNA-seq Database

Contig contig_2550351
Source Contig contig_2550351
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2550351 (7295 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_2550351

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38381	5	3403 bp	MLOC_38381.1	Available	Available	LOC_Os01g33040.1, FRAME:+2, EVALUE:0.0, 13101.m03335 protein kinesin motor domain containing protein, expressed
CDS Structure of MLOC_38381

Contig Sequence (7295 bp)

>contig_2550351 7295 assembly3_WGSMorex_rbca.fasta
CCCCCGCCCAGTCCCCCCCCTCGGCCGCGGCCCCCCCCCCCGCCCCCCCCCCCCCCCGAG
CGCACCTCCCGATCCGCTTCCGCCCGTGGCCGGCGGTTTCCTCCCCCCGCTTCACTCGCT
GGGCAGCGACCGGCGCGGGGGTAGAGATCCCTCCGAGATTGGGCCGATTTCAGTTGCTGG
TGACGAACCCTAACCCCCGCCTGGGTTGCTCGCGGAGTTTCGCTTTGGTCGTTTCGTTTA
TTTACTCTAACTAACCAGCCCCTTCCTTGCTTGCCTCCAGGTTGTTTCGGATTTGCTTGC
TGCCTGCGCGGCGCGGGACTACTGATAGCAGTGTTTTTTTCCGGGAGGAATTGGCGGCTC
GCCAGACCGGTTTCGGTAAGCGGTTGCGTTGGGCTTTCGGGTTATCCAGTTACTAGCGTT
TGAGATGCTTTTGGCTTACGAGAGTTTGGCGCCGATGATTCCTTTTATTTCTGGGGCGTG
CGCTTACGGTAGTTCGGAATAGGAAACTGTGGCATCTGAGCCTGACCCGCGCGAATGCAG
CTTAGCACATATCTATAAGGAAATTAGTTAGCATCCGGATTTGTGCTTCCTGACCCGCGC
GAATGCAGCTTAGCACATATCATAAGGAAATTAGTTAGCATCCGGATTTGTGCTTGTATT
GTTCTAGGTCATTTAATCAGCTACAGGAAATGCAGAGGTTGATGATTCGAAATTGGGGAC
CGTTGCTGGCCTGACAGCCGTGTAATGTTAGCCATAAATGGTGAAGTAAAATCTGATACG
CTTATTTATTTCTGTTATTGGAACTTAATGACTGTTTATTGGACCGGTCAGCAACAGGTG
GCACCTAACTGTGGAGATCGTAGTTGCAACATATCCTGCATTCTTTGAAATTGTTTCTTG
CATTGTCAGTATTAGTGTCTTTAATGGCTGATGATGAGCTCTTACTTCATTTTATATCTG
TATTGTTCTTTAGAAAACTGAACTTGGCAATTGCCACTGTGCCATTCCGCAAGAATTAAG
GCTGACTTCTTGGTGCTTGTCCCAGCCTTCTGTCTGCAGTTCGTACCGCAGGACTTTATA
CTCCAACAAGAACTAAAAGACATGGCTGCATCAAGGCCACCAAGCACCCCTATGTCAAAG
ATTGAGCGTGCACCGACCCTTACCCCTGGAGGTAGCTCCAAGTCCAAGGAGGAGAAAATA
TTTGTCACAGTTAGGGTGCGACCATTGAGTAAGAAGGAGCTGGCCATGAAGGACCAGGTC
GTGTGGGAATGTGCTGATAGCCAGACAATTCTATACAAGGGTCCCCCACAGGACCGGGCT
GCACCCACCTCTTACACTTTTGGTACAATGCCCCGTGATCAGATCAATCGGTTCTGTTGT
CATGGAAGCACTGATCTTCTATTTGACTAATCAATGCCTATGTATCCCATGCAGATAAGG
TGTTTGGGCAGAGTTGTCAAACAGACTTAGTTTATGAAGATGGAGCTAAGGATGTTGCAA
TGTCTGCATTGACAGGCATTAATGGTATATTAGTGCTTACTTTCAAGACTGGTGCTAGTG
GAATAATCATCTGTAAATGACCTTTTTCTTATCTTTGTTTTGCAGCCACTATTTTTGCCT
ATGGTCAGACTAGCAGTGGCAAGACATTTACCATGAGAGGTGTGACAGAGAGTGCTGTTA
GTGATATATACAGGCACATAGAAAATGTGAGTTTTGTGCATCTTCTCAAACAACAACTCT
GTGCAATTATTAAAGACTGCTAAGACATAACCATTTCTGGATTTTGTCTATTGCTTAGAC
CCCCGAGAGGGAATTTACTATCAAGATATCTGCTATGGAAATATACAATGAGGATGTGAA
GGATCTTCTAAAACCTGGCTCTGGTTCCCTTCGGCTGTTAGATGATCCTGAGGTTTGTTG
GCTCGATCGATACACTGCCCTTAAGAAATTTCCCTTCATGATGTAATGATCTTCTAAAAA
CATATTTTGGTTTCACAGAAAGGACCCATTGTGGATAAGTTGGATGAGCAAGTTGCCAAG
GACAAAGAACATCTGAGGCATCTAATCAGCATTTGTGAAGGTTATTATTATTTGTGAAGA
AATATGTACTGTTAATTATGTGATATTTTGTTACTGATCCACCAAATAACTGCAGGACAA
AGACAAGTTGGGGAGACTGCACTCAATGATGCTAGCTCACGTTCCCACCAAATCATTAAG
CTGGTATATAAGAAAAATATTTCCTGTTTACATTCAACCTTTCAAAGAAAAATGTATTGA
GCAAAGAAGTAACCTTTCTTTTGTGTATATATCTCTATGCAGACAGTGGAGAGTAGGCTC
CGTGAGGTGTCAGGCTGTGTTAAATCTTTTGTTGCCAGTCTAGTAAGCATAATACTTTTA
GTTTTGGCATGTGGGATGATGATTTTCATTGTCCATGATCTTAATGAATTTTTTATTTTA
TTTTTGCTTTCTTTATAGAATTTCGTTGACCTTGCTGGAAGCGAACGGGCTGCACAAACA
CAAGCAATTGGTGCAAGATTGAAAGAAGGATCCCATATAAATCGCAGTTTGTTGACTTTG
ACTAAAGTCATCCGGAAGCTAAGGTCTCTTTTTTTTTTGTGAATGCACTTCTACATAGGA
AATTTGGTCCAGATAGCTTTAATAGCTCTTTCTCTGCATTCATTTGGAAACTAGTTCCCA
AATTACTTAGATGCACTGTTTCTTTAGTCTTAACTCTAGCTATTTGTTAGATATGTAACA
ATCTCTCAAGTTAGTGTGGTGACTTCGCTACTAATGAATTTCATACAGAAGTGCTCAACT
GAAGTGTAAATGAAATGCATCAGATGAACATATTTTTTACTAAGGCACTTTATGAAGTGA
ACGATGTTATTATGCACCTCTAGTTATTCTAATCCCAACAATCTTGAGCGAGTCATTTTG
TGTATATGAACAAATTCTCTTTTGTTAACATCTCATAGTAATAGATTCTTGGTTCTGTTG
GCTAAATGACTGAAAGTTCAAACCCAAGGATGAGTTTTTTTGGAACACTAGTGGCACTTG
GCATGTGATGATTAATAAACAATAGTTTTTTCATATTGCAGGGTGATAAACTCGTCATAT
TAAACTATTACTAGATCGTTATTTTATTCAATTCAATTCATTTATGTTACCTACAATTTT
TGGTTCTCATTGTACATTTAATAATTTATATTAGTGTAGACATATTCTACATAAGAATAC
CTCACAGGTTAGCAGCATGAACCATGGTAAATACTTAGATAACCACTAAAATAATATGGT
TACTGCATTAAGTTCAGTTTGCTCCTCCATGTTTTTTTCTAATGAACCTGTCAAATATCT
AAAGGATGCTAAAAAATTGCATAAACTATCATTAATGCAAATAATTAGTACTCTGTACAT
TGCAAAGTTGGTTATACCTGAGTTTCAGAAACTGTGCACCCCTTTGCTTCAGCACTGCTT
ATAATTACTGAAAGGTTATGTGGACTAGCAGTTAGCATTAAGATTATGTCAGTAAGATAT
TACAGCCAGCATCTGCACATGTTTCTTAATTTTTAACAGCAAAATCTGTGGAAAAGAAAT
TCCATCCTTGTTGAAACTTCAAACATACCAATTATTATTTATTTGAGGATTCTTAAATAT
AAATTTGAATTGCAGCTCTGAGAAAAGAAGTGGACACATACCATATCGGGATTCGAAGCT
AACACGTATTTTGCAACTTTCTTTGGGTGGGAATGCAAGAACAGCCATCATCTGTACCAT
GAGCCCAGCCCTGACATACGTAGAACAATCTAGAAATACTTTATTCTTTGCAACCTGTGC
CAAGGAGGTCACAAATACTGCAAAAGTTAATATGGTAAGAGGTGTGACTATGAGGTTCTT
TGTCACAACCTTGGTTACTGAATCCAACTTACCATTTCATTGTCCATACAGGTTATATCT
GACAAGCAGCTTGTGAAGCAGCTTCAAATGGAAGTTGCTAGGTTACAAGCAGGACAAAGG
ACCAGCGACCATGCCTCCCCTTCTGAGATCCTCATAATGGAGAAGGACAGTAAAATTAGA
CAGGTAAGGTCTCTGACCAAGGGTGAAATGCTTGCTTTTACCTTTTGCAACTGGTCTAGT
ATAATAGAGTGAACCTTGCAGATGGAAATAGAAATGGAAGAACTCAGGAAAGAACGAGAT
AATGCACGTTCGCAACTTGAAGAACTACGAAAGAAGATGGGTGACAAGCTAGTAAGATTT
TGCCTTTTCCCATCAAGAACGTAACTTATTTGCTGTTAACTAATCTTTTCCAAATCCATC
ATTTCGTTTAGGGGTGGAATTCGTTTGACTCGCCACAAACGGCCCGAAAGTGCCTCACAT
TTTCTGGGTCACTACAGCCTAGTAGAATGATCAAGATAAGGAATTCAATCAGGCAATCAT
CCACTGCTCCATTTATGCTAAAGCATGAGATTCGCAAGCTCGAGCAGCTGCAACAGCAAC
TTGAGGTTGAAGCGAACCGAGCTATTGAAGTATTGCACAAGGAGGTTGAATGCCACAAAC
ATGGCAACCAAGATGCAGCGGAAACTATTGCAAAACTTCAGGCAGAAATCAAGGAGATGC
AATCTGTTAGATCTGAAAACAGAGACGTTGAGATGATTACAGATGAAGGAAATGGGTCTG
ACCTGAAAGATGAAATTACTAGGCTGCATATGCAAGACAGTGACATTGCTAAACTTGAGG
CGAAACTAGAAAATGTACAGAGGTCTATTGACAAATTGGTCATGTCACTTCCAAATGCTG
GCACGCAGTGTAATGAGTCGTCCACAAAGTCCAATGCGTCAAAAAAGAAGAGGAGGATGC
TTCTTCCACTGGGCGTGAGCAACCTGAACAGACCTAATCTAGCACGAGCACCTTGCTCTC
CTGACTCTTCTACCAGAACTTTGGAGCCAGAAGTTGAGAACAGAGCTCCAGACAGTCATA
CCGCGTCTCATGAGGATTTAGGAAAAGCTACTCCCGCCAAGAGTGAAGACACTGGAGATA
TATCGTTGCGTGATGAAGCGCCTCGCAACAGGGGATCCGGCTCAGTGAACATGAAAAAGA
TGCAGAGGATGTTCCAAAATGCTGCTGAAGAAAATGTAAGGAACATCAGGGATTATGTGA
CAGAGCTGAAGGAGCGGGTGGCGAAACTTCAGTACCAAAAGCAGCTGCTTGTCTGCCAGG
TCCTGGCCTGCACACAAATTCACTTTTTGGTCATACTGAAATTATTTTGTTTTTCCTGCT
AAAATAGTTCCCTTGAAATGTTCTTGCAGGTCTTGGAGTTGGAATCTAATGAAGCCAAAC
CAAATGACATGGAAGAAGATCCACAAGAAAGTGCCGGATGTCTACAAGACGGTCCTGAGT
CATGGGAGAGATTGTTTAAGGAGCAGATGCAGCACATTATCCAACTTTGGGATATCTGTT
ATGTATCCATCATACACAGGACTCAGTTCTACCGGCTATTCAGGGGGGACACGGCAGATC
AGATATACATCGAAGTTGAAGTCCGAAGACTGTTGTGGTTGCAGCAGCATTTGGCTGAAG
TCGGTGATGCAAGCCCTGCTGCACCTGGTGACGAGCTTGCAGTTTCTCGAGCCTCAAGGT
AAATATGCTGCCTGTCATCTTTTTTCTGTTTTATTACAGATTATGTTGGTTAACTCCAGA
AGCAAGAAAGTAGTGTTGAATAGAGTACTAGAAAAGAGAGATGCTGTTGAAACTCTACCC
TGATGAGCTTTAGTCAATTCAGTTAGCCATGGTGCAACATCCACGACCTTGTCTATGACT
GTGCACATATTTCGTCATGTTCACATTTCTTTGCTAGTTAACCATCATTCAATGACCACA
ACCTCTTGTATGATTATGAACAGATTTCGTCATGTTCATACTTCTGTGCTAGTTAACCAT
CATTCAACAACCTCAAGTCCACAACCTTTTCTACGATTATGCACATATTTCGTCATGTTC
ATACTTGTGTCCTAATTAACCATCAGTCCTTTTTTATCTGTAGGTAGCCATCAGTCTTTA
TTTTAGCTGTAGGTAGTCGTTACTGAATGTTTAAAAAAAAGAAGTGCACATCCTTGTTTA
AAAAAAATGTTTCGTCAGTCGTTATTGAATATAAAAGAAATCATCTGAGGCAGATATCGT
TCATCTTGCACGATTGCAGCATCAAGGCGCTGAGGACCGAGCGGGAGTTTCTGGCGAGGC
GGATGGGGTCCAAGATGACGGAGGAGGAGCGGGAGCGGCTGTTCATCAAGTGGCGGGTGC
CCCTGGAGGCGAAGCAGCGGAAGCTGCAGCTGGTGAGCAAGCTGTGGACGGACCCCGACG
ACCTGGCGCACGTCGAGGAGAGCGCCGACATCGTGGCCCGGCTGGTGGGCTTCTGCGAGG
GCGGCAACGTCAGCAAGGAGATGTTCGAGCTCAACTTCGCGTCGCCGGCGGCCAAGAAGC
CGTGGCTCACGGGCTGGCACCCCATTTCCAACATGATCAGGGAGAGGGCTCAGCTCTGGT
GACGAGCTCCGTCGGGCCGGCCATTGCCTTGCCGGTGAGGGGAAACGAGCCTAGATTTCG
TCGTGTCCATGCTCCGGACATGATGGCCTGTTCTCGTTCGAGTAGGGATGGATGGAGGAT
GGTGTATATTGAATTTTTTTGGGAGAGGTTATAAAAGGCTCTGGAAAAGTAATCATTTGG
CTACGTCTCCCTGTCTTTGTTCTGCCGCTTCGTTGCTTCCCAGTCCAACATGCGATCCCC
AAGATGGTGTTTCCTTTGAGTAGGAATGTAGGATGTTGTCATGTTGAGTTGGGTTGCCAG
GATGGAGTGCCGAACTTATTTCCCTTCTGAGCAGCATCGAGCTACCGCGCTCCACTATAT
TTACCGCGGTTGGTTGACATTTTGTGAGTGAGAGAGAGTACACCATAAAAGAATACACAA
CATCGTCTCAGATGGTTTTGACATTTTGTGGGTTTCCAGGAAGCCAGAGCGGCGGCTCCG
GAGCTCGTCGTCCTGGAGGTGTGTCGGTATTGATCACGTGGGTGACGGTGTCGTTGGCAA
ATGGCCTTGGGGTTGGCGTGAATGTCGGAGCGGCGGCTCCGGCTGTGCTTGTTGGGTGTC
GGCTTCAATTGCTCGAGTGATGTCACATCCCAAAAATTTAATCAAACAACAACAACAACA
ACAACNNNNNNNNNNNNGCCTTTCAGTCCCAAACAAGTTGGGATAGGCTAGAGTTGAAAC
CCATAAGATCTCGAAGCCAAGTCATGGCTCTGGAA