morexGenes - Barley RNA-seq Database

Contig contig_2550159
Source Contig contig_2550159
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2550159 (6666 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_2550159

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38307	3	1520 bp	MLOC_38307.2	Available	Available	LOC_Os12g01950.1, FRAME:-1, EVALUE:4e-123, 13112.m00119 protein expressed protein
CDS Structure of MLOC_38307

Contig Sequence (6666 bp)

>contig_2550159 6666 assembly3_WGSMorex_rbca.fasta
GCATGATGCAATATGGACGTATCAGACCGCCGCTCTGCCGGGTGTGGGATGTGTCCGAGA
GGCGTGCGGGGGGTGGAAAGACGTGTTGCTCCCGCTTACTCCGCGTAGCCCAATGTTGCC
ATCCCCGACAATGGCTTCTCGTCCCATACCTTCTTGGATGCATGACCGGTGTTGCAGATG
CCTCATTCGTGGGCACATAGCGACTGAGTGTTGAGATCTATTTCATTGCTCCCGTTGCTT
GGAGACGGTCACCATGCGCGTGGATATCGCCATCCATGGCATCCTTTAAGCTCGATGTCA
TGACTTATCGTGCATCCAATTCTGGATATCATGCATCGTCCTGCTCCAGCTTCATGTGAG
GGTCCAATTAAATCTGTGCTACCATCCAAGGCGTTTCGTCATGGGTCTTGGGACTCTGTC
GTCTGTGCTACCGGTGGCTCGGCAACCCATCCTGATGTGTAGTCTGCTCTCGCTGATCGG
ATCGCGCAGCTGCAGGGTTGGATGACATGGGTTGAGAGCTTTCTGGAGAGGGCATAGGCT
GCTCTGGGCAGTCTCTCCTTTGGGTCAGCTATGTTGTCGACCACTCTGGCGTCATGCCCT
CCTAATGTGGTCGGTGTTGCCTCCACGGAGGAAGCCATCCAAGAGTGATATGGGTATTTC
TCTCCTCGTGTTGGGGACAATGCATCGCCAGTGATTCACTGTCGACCTTGTCTCCTATGT
TGCCTACAACTGAGGGGGAGCCCATCGTCGTGCTCGAGGCTCTGGTTCAGCAGATCATGC
CCGACATATAGACGCTATGTTTGAGCCCTGTATTGCCTTTGTCTATGAAGCATTTCGAGG
TGGACTCATTAGTGACCTCGTGTGAGGGGCATGTTTCACCTGTGTCATGTGAGCAAGTGT
AGGTGCATGAGTAAATTGTGTCAGGGTTCTTGTGGGCGATGTTGTCATCTCAGTGGTTTT
TGTGGCTGATGATGTTGAGGCGGTCGGTTTGTTGGTTTGGGACCCTTTGGAGCCCAGCCA
GTCACTCGCCTTTGTGGACCGTGGAGGTTCTGACGTTGCGGTCACCAACTCACATGTGAC
CGTTGGGCACGTGATATCTGTGCGTGACAAGGTCGATGAGATTCTCTTGAAGATACATAT
TCACAGCTTGCGCAAATGTTTAGACGCGGCTAGCCCTGGATCTGACAAGGTGGTTGTGGA
GGAGGCTCTTAGGAAACAAAGAAAGAAGTGGTGCGTCACAGGAAAGGCGTCCGCAACTGC
TTGATGGATGGTCATGAGTCTTTTAGTTGTCCTTAGGGTGGCTTGTCTCCGTGGTCTCGA
TGGTGCTCGTGGTCTTCGGCCGAAATACTCTCGTTAGATGTTTCTTTCCGATGTAGTTGT
GTGGGGGTTGGTGATTGTTACGTTTTGGGTTATCGGGCTGATCATGCGCTTATGGGGTTG
CATATTGTGTGAGTAGTCCCCATGTGATTGGTTTATATCGGTTTTCATCTGATTTTTCAT
TAATTAATTGAACAATTTTCTTCTGCTTAATTAATCAATGAGGCAAATATTTTGCTCTTA
TTTCAAAAATAAAATCCTCCAACAAAGAGCAACTTTCCTTTTAACCACTAAATTGTTTCT
CTAAGGAAAACTTTAGTGCTCCGTCGGCTGATTACACAGACTGTTCTGCCATCCGCGTAA
CCGTTGGATCGTCCTTGATCCACGCTTCCGTAGTCACGTTTATGCATGTTTGTTATTTTT
TACGACAATTTAAAAAAACTTTTACAACATTAGTTATGTTAGAAAAAAATGCAATAAACC
TCTGTTGCGAAAAAAATAAAAAAAATCTGCAACAAGAACGCCGTTATAAAAATAATCCCA
CAACACAACCTTAGTTGTCAAAAAAATCATGCAACATAACCTATGTTGCAAGAAAATTCG
CAACATAATTTTTATTGTTAATGTTTTCGCAACAAGCTCTCTGTTACGTTCAGCCGCTAG
ACTGTGCCACGTCTAACGACTCGCGACGCGTAGCAACCCCTTTCTCTAAGTGCTTCTACA
TGTCTTTCAGTAGAAAGGTGAATCTCACCAACTTCTTTTTTTCTTTTAGGAAGACATAGA
ATTGAACCTATTCAATTGTCTTTTAAACTTCTATTGTGAATCAGTTTGCAGAATCCGGAA
AAAGCAAAGAGGTTCGAGGAGAATTGTGGGTACATTTTTTTAGCATCCAAAATGCGCATA
TTGTCAAAAAAATCCAAAATGCGCAATATGATTTTCCTGGGAAAAAAACTTGTTTAAGAT
TTTACATACTCTGTACGACAGGAAACCAATCAGGGTGTTTGGTCTAGTGGTATGATTCTC
GCTTCGGGTGCGAGAGGTCCCGAGTTCGATTCTCGGAACACCCCTCATTTTTTTTTTACT
GGTAATGATCTACGTGATAAAAATACAATTTAGTTACTCTGACTTTTAGTACCGATATAC
TGCTCAGATCCATGCATCTAGATCTACTTGCTACGATGCTACGGATACCATATCTGCTTC
AAACATGACAGTTCTCACTTGACCACCACGGTTACTAACTCTAGGCACAAGCTTCCTGCA
TAAACGAAGTTCGACCTCAGTTTCTTCAGAACCAATTCGAGTAGTCAAAATCCCTGAGCT
TCCGGAAATGCTTCTCCACGTCCTGTCTCGATTTCGTCCACTCTTCTCTTTGGATGATAG
TGGTGGCATCGTCTCTTTGAGACTGTGATATACCAATGACCGAAATTAGCTTTACAAGCT
TGGTACTAAGAAGAGAATAATTGTGAAGCAAGCAAACTACCTTGTCAGTTATTCTGAAAG
ACTCCCCTCCGTCCCGTATGAGTAGCAGGTCATTTCTCCTATCTCTCCTTTTTCCTTCAG
GGACATTCACCTGTCAGACAGTACACCGAAATTAGTACGTACTTCACAAAAAAACAAAAT
CACTTAAAAACAAGTTTTTGGTGTTAGAGAAGTTTGCAATTCACCTACCATAATTTCTTG
ACATGATCAGACTGCTAATAGTTTTTATTTGTTTATTAATTTGATAACTATGGGTTATGG
ATATTCGTTAAATGATCAATGAAAGGATTAAGAATCTCAGTGGCCGACCATAAATTTTGA
TTGTGAAGACACTTGAACTGTAGTAAATTCAGATAATACTAATATTTACATTAGAATCCA
ATAATATGGACCCAGACTAATATGATTGACATTGCGTGACAAATAACAGGTAATATCCAG
AAGAAATTCTACCATTTGACATTGATATAATCCCTCTGTAAACTTCTATAAGATCGTTTA
GATCATTAACAATCATTAAAGTAGTCATCTAAACGATCTTATGTGATCTAAAAAATCTTA
TAAAAGTTTACAGAGGGAGTATTTGATAAGAATCCAGCATCATCACTAGTAAACAAACAG
AACAAATGAACAATGACTACTGAAAACTTATCTTTCAGGCACATAGGTGAGATGGCTCAG
CTATTTAGATTAGATGAGAAACTAGAGTAACTAGTACAGTATAACATACATTATGGTAGA
TTCCATATACTCCCTCCGTAAACTAATATAAGGGCGTTTAGATCACTAAAATATCTAAAT
GCTCTTATATTAGTTTACAGAGGGAGTACATGATTACTTTTTGCGGAAGATATACATGAT
TACTTTTTGCGAAAGATATACTCCCTCCGCCCCAAAATAAGTGAAGTAAATTTAGTACTA
AGTTAGTATAAATTTTATACTAAAGCAGCGATACTTATTTTGGGACGGAGGGAGTACATG
ATTACTTTTTGCGAAAGATGTACATGATTACTTAAATACAGAAAAGCAACTATTGTTTTC
ATGTCCTGCAAGAATTTAGATTTCAATTATCTTACCACTACTTTTGCTCTTGTGATTGAC
CTTGTTTTCGAGTCAATGACATAAATCTCCTCAAAATCAAGGAAAAAATCTGTATCGCTG
AACCGCCTGTTTCTGTAGTGTTTTGTTAGGAAAACCTACAGCAGAAGTAACAAAAATGAA
ATACATATACTTAATAAGATCATGAAGCTAGATGCATATGTACTTAATACTATATCATAT
CCTCGAAAAAAATATTTACTCCCTCCATTCACTTTTATAAGTCCTTTCAGATAACTGAAA
TTGAAAAATTGAACTGTTTTGCACGCTGTCTGAAATGTCTACAGCTCCTTATAAAAGTGA
ACAGAAGAAGTATTAACAATAAGCTAGCATGTCAGGTGAGCAGAACTAAGGTGAAAGCAG
CAAATCATAAGATGCAGTTAGAACAGTTAAGTGTCCCAAATCTTGGGGTGGAAATCGAGT
TAAAGCTCGGCTAACAGAAAACCCACTGATGTAGCCGTATATCTTAAGCAACGGTAACTA
AGTAACTGTACGTATTTGCTGATTTCCTGTTTTAGCACCTACGGTAATTTGCACTGTGAG
GTCAATAAACAATGCACTGCGCATCCCGTAAAGGACCAATAAAATCAAGTGTACAATCTG
CCACGCGGGATATTATCAGGAGTTTCACTGCTAACTTCATGTGAACTGAAGCTTTGATAT
GCATATCAAGATTAATTTCACCTCACAAGTCAAAACTACCATCGGCAAGGACATGTCTCA
CCAAGCAACTATAATACATTCCTACTACAAATCGAGTGACAAAAATTAAGGATGCAAGCA
GCGCACTCCGCATATTAGTACACTCTAGTACAAATGTTGAGGCCATTAGTACACTGAATG
GCATGGTGAGCAGGACAAGCGGGCCATCGCTTGCATCCCTAGCAAAAACCCTGGAGAGAA
CTTCAGAACCTTTATGTCTGTTAAATACTTAACTCTCAAGCCACATTCGGCAAGTTCATT
TGGTTTACAATAGAAGAAACACAACGGAATGGCGCAACAAACTAGCAGAGTAGATAACGT
TCTCATACATACCTTCATAATCTCCCTCTCTGTCTTGTACAGGGGATCACGCAGATGCTC
AACCGGTGGCTCACTTACATGGTAGCGGCCAAAGTTTTTTTTCGCGCACCTCACGTACTG
AATTTCAAAGAGAAAATCAACAATTAATAGCTTAATGCATTTTACATTCACCAAAAATAA
GAAATAGCAAGATATGTGCACCTTTTGTGGCATCGGGGCAAGAACCCTTGGAATGGAGTA
GATGTCGGTGTCAGGCGGTGTGACATACATCTGTTGCACACAATACCACATTGAGCAGAA
TAAGCACCACACAGTTAGCTTGAAGAATACTTCTCCCTCCGTGATCCATATTGTCGCTGA
TTTAGTACAAAGTTGTACTAAATCAGCGATTATTAACATGGATCAGAGGGAGTAGTAGTT
GTTAACTGCCCTAACATTGCTGACGATTGACATGTTAGTCTGTTAGATGAAATGTCACAT
AGGTCAAACGCATTTTGGCAGACATGAATGCTGAAATAGTCTATTTCAAATAGAGCAGGA
AATTACTGGAAAATGTAGTAGTAGATAAGGGGAATCATTAGGATACCTCTCGGAAGTCGT
AGACGTCTTGGTCAGGGTCGGGCACCTTGCGGATGAAGAAGTCGCAGTGGAGCAGGCGAA
TCTTGTGGAACTCATCTTCGTCGACAGTGTAGTCGACGACGGTGTCAGAGGCGGACTCCC
CAGTGGACACGAAGCTCTGGGCCGCTACCATGGCGATATCCCCCTCCCCTTCCTCGGCTC
CGCCGCCAACCCCGGAGAGCTGCGGCCGAGGCTTGACGGGGGCGAGGAGGCGGTCGTAGT
CGACGTCGTAGTCCTGCTCGTTATCGAGGTCGTCGTCGTCCCCCACACCGTCGTCTCCGT
CAAGGTCGAAGTCGCCCGCATCGCCGAAGTCGTCGTCCATGTCGCCGTCACCGTACGCCG
CCGAGACGTCACGCTGCCGCCGGCCCTGCCTGCGGGGGAGGAGAAGGGGTGCTGGGGTGG
TGAGGAGGGAGAGGGTGAGGGAGTGCGGAGGAGGGAGCTTGGAGGTGGAGGTGGGGTTTT
GGGTTTTGGAGAGCGCAGAGGGGAATGGATAGGGAGAGGCGGTCGCGAGCGGAGTGGTCG
CCATTAGCGCGAGAAGGTCTTGCACTCTGCCACTGACGACTGTCTTGAGACTTAAAATAT
TGGCGTTTTTTTTTTAAAGGACCTCGGCGGTGCGGATTTTTGGAAACCCACCCGCTAAGA
GCATGTGGCAATTAGGCGTTCCCAGGAGTCAAAATAGCGCCGCCTCGAGGTCAAACGGTG
AAAAAAAGCTTGAAAAGGATCGGTTTCCACCCACACCGTCATTCAGTCGGTCATATGAGG
AAAGAGAGGAGGGAAAGATTCTTTTTTGCATGCACATGGTGGGTCTAGTAGAAAGAGAGA
GGAGAAAGGCTGAGCGATGGGGGTTGTGTATGCAAAAATAGCGTCGGTAGCCCCAAGTGG
GAATGAACCTGACAGTAGAGGTGAGGGGTACGAAATGAGAGGGCATAGTCCTAGCTACGA
CAAGCTTATACAAACGATGTATGAGTTCATGCCCCTCTCGTGGAGGTAACAGCCCTACAT
CTCAGTGCATAGGAGCTCTTGTCTTGTGGAGTGTGTGTTACACGGGGTGCGAACCCTTGT
GTCAAAGGGAGGGGTGGCTTATATAAAGTGCGCTATCCCTCATCAAGGCCCAGGCAACCA
AGGGTT