morexGenes - Barley RNA-seq Database

Contig contig_2550087

Source Contig contig_2550087

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2550087 (2741 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2550087

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38276	2	2159 bp	MLOC_38276.2	Available	Available	LOC_Os01g42820.3, FRAME:-2, EVALUE:5e-96, 13101.m15050 protein RNA recognition motif containing protein, putative, expressed
MLOC_38275	1	302 bp	None	Available	Available	None

CDS Structure of MLOC_38276

CDS Structure of MLOC_38275

Contig Sequence (2741 bp)

>contig_2550087 2741 assembly3_WGSMorex_rbca.fasta
TAGTCCATAGTGGAATCTCTAAAACGACAAATATTTAGGAACGGAGGGAGTAAATACGAA
ACAAAAAGGGTATCCGATCTATGGAATAAACGGAATTAGCAACGGAATATATGTAAAACC
CCATCACATCAATCAACATAATTCAGACATTAACAAACATCTCCGCTTCAACCTGTACCA
GACCCAGAGTCAAAACTAAAAAGAGAATGAAGTCTTGGAAACTTAATGGTCAAGCATATC
AGCATGGGCCCATTACAATACTCTGTAAATGACAGAAATTGCTCGGATTGTTTGCCAACT
GCTATCACTCCACCACAGAAACACTAATCAACTACTCCCTCCGTAAACAAATATAAGAGC
GTTTAGGTCACTACTTTAGTGATCTAAACGCTNNNNNATTTCTTTACAGAGGGAGTACTA
GTTAGATCAAGTCAACAACACACAGGCACATATGATCTGTTAGCATAACCAAAATCAACA
ACGGCAGAGCTTGATCTTCCAAAAACAATACCTTGGTGACAAATCATGCACCAACTTCAC
ACAATGGCATGTCAGAAAGAAAAAACAACTATTGCAACACACAAACACAATATCATTTAG
AGCAAGGGATGCATCAGATTATCATGCCAAAATAAACATGACCATGCCACAAAAACTGAA
GTATCGGCCCACAAAAGAACACAGAATAAAAAGCAAATAGCACGCTTATCAGGAAAGAGT
ATGGAACATGTTACACAATACATCAATAACCTAGCAACCCCATACCGCCAATCAACTTTT
GCAGCACCACATCGCTCAAATCATCTTACAGATTTTGCTAGTTCAAACCAGGCAGCAATC
ATACATTCCAATTACATCACATATATTCACATAAAACACAAACGCAGCATACAACAATGC
AACACGTGCAATTTGCAAACAGGCATAACAAGACATAAGTATTTCAGGCATATAATACAC
TAACACATAGTATTTCATGATTTAGAAAATAGCGAAAGACCTATGATGCACAACATATTT
TGCTAAAAATATGCCTCTTCAAAACAAGCACAGTCAGCTAGCAGAAGGGTGTGAAATTAC
CTTAGAAATAAGGTGGCACATTGGGGTACATTGGAGGAGCCCTGCCACCTGGTCCTGGTG
ACATCCCTTGAGGATCCTGACCCCGGAAACCAGACCCTGGAAGAGGATAGTTTCCACCCT
CGCCATAGCCTGAGGGCAGCCCACCTGAGCCCTGTTGCATACGGTATAGTGAGGAAGGTC
CGCCCATGCCTAGACCACCATAAGGCCCCATACCAGCAGCACCAAATTGAGATGAGCCCC
CGAATGAACCACCACCCAGTCCGCCACCGCCGCCAAATGCACCAGCCCCAGCAGAACCCA
TCCCGGAAGGCATCTGATTTCCCATTGGGCCCAAACCAGCTCCACCACTGCCACCCATGG
ACGATGGCATGTTACCATATGGGTTGGGACCCCCAAATGCACCAAACGATGGCATACCAT
TCCCAGGGCCACCATACTGCCCACCCATCTGAGGTCCTCCTAGCCCAAGCCCAGAACCAG
GCATGTCCGGCGGGCCACCCTGGAGCATCTGTGGTTGCTGTTGCCCGGCAGGCCCAGATT
GCTGCGGTTGCTGCTTCCCCTTCTTCCCCTCGATGGCTAGCTTGCACAAGAGCTGTTGCC
CATCGATTACCTTAGTTGAGTCCACTAGTGAGGCCTGCGCCCCCTCAGGTGTCTTGTACA
CAAAGAGCGCAAAGCCCCTAAACTTGCCCGTCAGCTTGTCGAATCCAAGCGGCCCCTCTT
CAATCTCTCCATAGGAAGCAAAGTGCGCGAGGAGGCGCTCTGATGGCATGTCAGCGGGAA
CGTTCCCAACAAAGATCTTGCGGAGTGAGACGTCTGCTGAAGGGATGCCACCTGCGCCAG
TAGTTCCACCGGACGGTCCACCGGCAGCGCCAGCGGCCGCGAGTTGAGTGACGGTCACGC
GGGCGTCGATCTTCTTGGATGGTTCCTTAAGAGCGAGGAGCGCGGAGTCTGCGTGGCGGA
AGGTAACGAATCCGTAGCCCTTGGAGCGGCCGGTGGTCTTGTCGCTGATGACCACGGCCT
CCTCGAGGTCGCCGTAGGCGGAGAAGATGGCGCGGAGCGAGTCGGAGTTGGTCTCCCAGC
CGAGGCCCCGGACGAAGAGCTTGCGCAGGGCCGGGTCGCGGTCGGCGGCGGCGCGCACGG
CATCGAGCGCAACCCCGGAGGCGAGCGCCGCGGCGGCGGCGATATCGGCGAGCTGGTCGC
GGGACAGCGGGTCGAGGAGACGCAGGACGTCATCGCGCGTGAGCCCGAGCGCGGCAGCAC
CGACGGCGGGGGAGGCGGCGACCGCGCCGTTCTCGTCCGGCTTGCGCTTCTTCGAGAAGG
GATCCATGAGCGGGGACGGGGGTAGGGAAAGAGCAAAACCCTAGCTAGGGCTTGTCGGCG
TTGCGGCGAGGGTATGGGTGGGTAGGAAGGGTTCGACGCGACTTGTCGGGTGGGATCAAA
TCGGGTGCTTTTATCGACCTAGCGGCCGATCTCACGCCAACTCCACCGCCACAACCCATC
CTCTCAAGCCCGTCCGTTTGCGGTAGAAGGAACAAACGTGTGTTGTGAATCCATTTTATC
TGTTTTATGTCCGATACGATCCATTTCGAGTGCAAACTTACGTAAGATTTAGGTTGCGGC
GGATATCAAACGGATGCGCGCTCGTCCGCACCGGGGACGCG