Map Locations of contig_2550052 (5421 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_2550052

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38263 2 1588 bp AK362876 Available Available None





CDS Structure of MLOC_38263






Contig Sequence (5421 bp)

>contig_2550052 5421 assembly3_WGSMorex_rbca.fasta
CGACGACGACACCGGCGGCCACTGAAAACGGCGACGGCCACGGCATCAACGAGCGTTTTT
AATTTTTTATTTCATGTTAATTATGTCAACGACGGTGAAACTGTGCCGTTTTGTGGCCGT
GACCCTTAATGTTATGTTTTAAGTTTTTTTAACTGCATTTATTTACTTTTTATTAGGTTT
TTTTTTAATCACGTCCAACATGGACATGATTTGGGTTGCGGCCGCGCGACGGCCGCACCG
CACGGACAAAATCTGATCAAACCGGACGTTCGTTTGGGGTCACACCGGTGAAGTTGGCCT
AACTGCCCTGCTTGTTGCGCGTGCGTGCGCTCACACGGGATTTTGTCCGGACGTCGAACG
GATTCTTCTCCCGTTCATCATCAACGGTTTGGATAGGATGCGATGGGTTGTGTTTCGTTT
TTTTAAATCTTTTTTTGCTCACGTAGCCAGGCTACACTCGAAATTACAGAGTTCGACAGC
AGCATGCAAAACGGCGGCACAGCAAATCTGCTGCAGCGCCAGGCCAAACGTTCTGAACGA
CGTGTTCCATTTCATACGTATATGTGTATGTGCTGAAAACTGGATCACATGAAGAGCTTC
TCATCAGGTTTTAGACTACTACTTCATTCGTTGTTACTACGAAAGGTACAGTAAATCTGC
TGCACTTGTTATCATCAATCAGACTTGATTGTTATCGGAAAAAATGTAACTTCGGTGTCC
CAAGGCATGCACTGTCTGGAATAGCATAGGCTCAACAATCCATTATAGTACAGGAGAGTT
AACAAATCCCGTATACCGTGAAATACGAAACTCCATAGTACACTCCGTCCGTAGTATTTC
CCCTTCACGGCTGATATATGTATGCAGCCTAACACACAACAAACAAAGAAAACAAAAGAA
CAATGGTCCCTTGTTAAAATGTACACACACACAAGTGGTCTAGAGCTACTGGGCAATCTC
AGGTAGTATCATTTAGGGCATGATGATACATTTCGACTAGTCGAAGGCGGGCACTGATTG
TACGCCGTATCGAGTTTGAGAACACCCTTAGCGGCCTGCGGGGTTCCTGTTCCAGGACAG
GTAGTTGTGATCCCCCAGTTTCCTGCAAAAAATAACATAAACGTGTAAGAACGTTAACAA
GGCTCTCATTCAGATAGGTCAACAGAGGCAATACTGGTTAGTCACATTGCAACAATTCAC
ACAGAATGTGGTGGTTCTGTTTCGAGGCCTGCAGCGCTTGTGATAGCTTGATCGTGTCCG
CACATGTATGACAAAGTATGAGCTTGGTATGGATGCAGCACTCATGGTAGACTACCAGGG
TAAACCAACTATTTATATACCTATACTAGTACTACTATATAGTGTACCAGTTCTGAATTG
GACCTTAAGTTCAAAAAAAAAAAATTGGATCTATAGATCAATCCTAACCATCGCGTGAAT
GACTGCTAAATTTAACGGATGCAAGCAGTTGGATTTGCGGTGAACAGTAAAACGTGGATG
TCTCCATCATATTCCAGAACCACAGCGTTTCATCCTTCCTGGGAAAGGAAAAACCCGTAA
CTAATGCCTCCTGGGCCATGTTGTCGACTGAGCTGAGATGCCCCAGCGAGATGGTCTGGT
TAGGATAATGGGAGAGAGTAGAATACTTTTAAAAGTTCTTCTCTGTGTCACCATCAGTGT
GATTGTGTACTAAGTACTAACTTCTACTTTTGTTATATTTAATTTCTGCATTTGTATAAT
GGCATTTCTGATTATTATTTTTAACCAAAACAACTGTAATTTAAGACGTGCAATGCACAT
GTATACATACTAGTAGCATAAAGGGCCAAAGTAAATGGGAACAGCTGGTTGCCCTTTGCC
TGGTGGCTGGCCCTACTAAAATTGGCAATATATGCTTCTACCCAAAATCTGTTTAAACAA
AAATAACAAATCATGAACTATGCTCATACAAGGATACAACCCAATGTCAACTTAATCTTC
AAGACTAGGAGAGTCAAGATGAAATAGAGTACATCATCCATAGTCAGGAGGATGTCAGTA
TACATGGACGGATAATTCTGCCCCAACAAACCTTGAGCAACGGCCATACTATCTATGCCA
TGGCAACCAAAATAGTAGCCATAGGCCACAGCCCACAAGTGTGGCCCATTTAGGCAAAAA
GGAAGCTTAGAAAGTGTGGCAAGTCACAAGTGCAAAAAGGAACCAAACGCTTCACAAAAA
AAGAGAGGTGAAACTAACAATTCTAGGGGTTGCTATGTTACATATCGAACCAAACACTCC
CAAAATCCAGAAGACTTGCTGCAGGCATAGCATTACTGCTCCAAATGTAGCATTAGGTGG
ACAAGCATCCCCAAAGAAAACTTACTTATGGACTAAATCAAGAAGGTTAACTGCTTGTAT
CACGCATGGCTTACAAACACAAAAGGTACACATCGGCAGTAGCATATTTTCATTTAACTG
TAATGAACCTGAGTTCAAAAGTTACTAACCTTGGCTTTATCAAGTATAGCAAGGTGAATG
CAAATGCCAAGAAAATACAGAGCCCACCAACTATGAGGTATGCAAACCCAAGAAAATCAT
TCTTTCCTCCAAGCCAGGTTGCAGTGGAAAGGACCAACTTCTTCTTGCCACCAAAGCTAT
ATGTATTGTAGTTGTTACTCAGCTTCACAGTTATGGTATCATTCGCCTTGAGATCAACGT
ATATCCTCCCATATAACTTTCTGAATGTAGGAAGCGCTGCAGTCCGCATCCAAACGATAA
GATCCTCCTGTTCGCTCAGCTGCCGCGTAAAAAGAGAACTGACATGAATAACTTTTTCAG
GTATTCCATACCTAGAGAAACTTCTTTTATCCAAGTCAAAGAACACAAAGAACCATTGTT
GCAAATTAAAATATTGAGGGTATATATATCAAGTGAACAATTCTAGCCTACATATATATG
GAACATGGTACAGATAAAGAGTTTGCATACCGGGATACTCGAGTTAAGCTTTTTACCACC
TATGAGCGCACCATTCTGGAAGTTGCTTGGGTAGACATTTTTGGCAAATTTGTGCTCCCT
ATCACTTTTCCAGGAGATGTCCTTCTTGTTTACTGTCAAGTTGTCTTTACCACGACTGAA
GCTATATGTGTCATTAAACAAACTCCAAGCAATCAGACCACAAGGAACAATTGGTTTTCC
ATCAGCCGTGAACCTCTCAGGTTCACATGAGGTGGTCGTATTTGACTTCTTAGAATCTCT
TAGTTGTGCATCATTTCGGCTCTTCACATACCTGAAATTGGAAGTTGTATAGTACATGTT
AAGCCCCTAACACATGCTATTCTTAGCAATATGGTAACCAAACTACCAAAGTACTCCCTC
CTTCCCAAAATATAAGGCGTGTTTGACTTTACACGTTTTTGGTGCCCTACTTTGACCATT
AATACTCCCTCCGTCCCAAAATAAGTGTCTCAACCTTCGTACAACTTGAGACACTTATTG
TGAAACGGAGGGAGTATATATCAAAGTACATGGATTGAATATGTATGAGTAGCATCATCG
TATTTGCCTTGCAAAACAATTCCATTTCATATGTTTTTATAATGATTTTGTAGGCAAACT
GTAAGTGAAAATCATAGTCAAAGTTGTGTGATGAAGACCAAAAAAGTCAACGTGTGCCTT
ATAATTTGGGAAGGAGGGAGTATTAGTTAATCTGCTATGTAGTATGCCTTTTCGAAGTTG
ATTCTACAATATCGATTTGAATTTGCGGAGAAACATTTAAATGAATAGCTGTGAAGTTGC
TCTAGAAGTTATTGACTGAAAACATCAAATAAGACTACCTCCTATGATTCTGATAAAAGT
TGTCAAGTTGGTAGTACACGTAAATTGGCTGCTTCATCTCCTTTGTAACCTGCATGGTAA
CACCCAGATCTCATTTAGCTAAGAGACTGACAGAAGGTGCTTGCTTATAGCTGCACATGC
AACACAATTCTATTCACTTGAAAAATTACTGTAAGATAACCGTTAAGTTATGTATTACCG
TGAGAGTCCTTGTGCACTCTTTAGATATAGTCTCATTCTGGATGTACGCAAGCTTATTAT
CAGTCATGTTAGGTGGGACACATGCATGATCATACCGATCAATGATCTCAACAACCTGCA
ATCAGTCAGCATAAGTGAAGTCAGAAACTGCCAGTGTGTATATGTTAACACAAGGTGCAA
AAATAGTCGACGCCGTACATCTTGTGCAGCTAGTAACGAGACGACACCAACTGGGACAAA
GATGACGCCGACAAGGAAAAAAACCGAGACAACCTGCATAACACAAGCCGAAACATCTGT
GAGCTACACCAGCACGCGCACTGTTGTATTCTATAAGCTGGAGCACCGTAATATCGGGAG
GCAGTATGCTTACCCATTTTGGAGTAAGGATCGGCTTACAGGCCGGCAGCTCCTGCTGCG
TGAACTTGGAATCTGCGCATAGGAATCCAGGAGTAAGAATCGGCTTGCATGCCAGAAACA
CAAGCTGCACCACAAGGTTAGGAGTTTCCCTAAGTTAGCACTTCATTTTTTTTTAACCGG
GCTAATCCCCTTTCCATTACAACCTGCGCCAAAGTTATACTAATATCCATTGCTCATACA
GAAGCAAACAATGCGATCAGGTAACTAGGCACTGGATTGTCTCTTCTTTCTAGATTAAAC
GAGCTATAAGTACTAGATTAAGCTCTCTTGCTTCGCATGAACGAAGCTTAGTGTAATTTA
GTTGCTATCCGAGCTGCATGAACTTGGAATCCGAGCATAGGAATTCAGGGATACGAATTG
TGCTGCATGCCAGAAACACAAGACAAACCACTAGAACAGGAGCTTCCATCAGTAACCACT
CCATCCACACTTCGATCCCAGAGGTTTAATGATATCCATTGCTCATACACAAGGAAAAAC
AAGCAAACACCACTATCATGTAACTAAACACCAGGGTAAGCTCAGATTCTTAACACCAGG
GTAAGCTCATGGGCTGAGTGCCCCTTTTCCTGGATAAAACAAGCTATAATCACTAGGGTA
AGCTCAGATTCTTAGCAAGGGAAGAATCGAGCTAAGCTACTGTCCCACCGTGGTGCCAAG
ACTAACAGAGAACACGACCACCTGCCTAGCAAGCAAGCATCCCGAGAGCCCCCGCGCTAA
CCAACCAAAACGAATCAGCGCCGCTAAGGGCGCCACATCCATTCCGATTTCGGAGCAGCG
AGCGGCGAGGAGAATCTAAGCAAGGAAGAAAGGGGCGGGGCGGGGCGGCCAGTCCAGGCC
AGATCTCACTCACACTTGGGCATCCTGGTGTTCCTCCTGGCGGCGTCCGCATCGGCCCCG
GATCCGCCGTTGCTCGCGCCGGCCGCGCCGCCGTCCATCATCGTCCCCGCCCGCCGCCTC
GCCGCCGCGCCGGTCCGGAGC