Contig Data
morexGenes
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Map Locations of contig_2550039 (6033 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_2550039

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38256 3 2168 bp MLOC_38256.1 Available Available LOC_Os07g18510.1, FRAME:-3, EVALUE:4e-99, 13107.m01940 protein OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed
MLOC_38255 1 433 bp MLOC_38255.1 Available Available None





CDS Structure of MLOC_38256






CDS Structure of MLOC_38255






Contig Sequence (6033 bp)

>contig_2550039 6033 assembly3_WGSMorex_rbca.fasta
CCGGCCGGTCGTCGCCGGGGCCGCGCGCCTCCAGCGACAGCGCCACCACCTCCTCTCTCC
ACCCCCTCATCCTCGTCGTGCTCCTCCTCTCTCTTCTCTCCTCTCCTCTCCTCTCTCTTC
TGCTGAGCGATCGGTGGACCGATAATGAGCAGGCAGGACGGACGGGGGAAGAGCGGAGAA
GGAGGTGGAAGCTTGCCGCTGCTTCTAGAGAGAGACACTGTTTTTATTTTTATTTTTTTG
AGGGCTTTCTAGAGAAACGGATGGGCCCGGCCGGTGGGTCTACAAGTTTCCAGTCTGCAG
TGTGAGATGTGTTGTTGGGCCAGCCCGACTTATCGCTCATGTTCGAACGGGCCATTTATG
TTCTCGGAAAAAGCCCAGCTCGAAGCTCAGAAAACAAATGTGCTCGGAAATAGCCCAGCC
TAGCCAAGCTCTAAGTCATCTCAAATAAAAAAAAATAGTTGAAGTAAAAAAACAATCAGA
TCACGAACGGTTTTTACGGCAAATTTAGTTGGTAAACATGGTAACTTTCTCACAAAATAT
GAATTGGGAGGAAATTGACATGTTTAACTACTAAACTTGCCAAGCTCAAAGTCACCTCAT
GTCAACTAGAGTTGCCGTGAAATATGTTCACGTTGCCATGTTTAAAATCCAAACATTCGA
AATTTACCGGGATCCTTTTTTAGAAAAAGACCACCAGAAACGAAAGTACCCTTCTATTCT
CCAAGTGCATTCCCAGCTTCCTTTTCTGAAATTTCTCCAAAAAAAAGCTTCCTTTTCTGG
AAAAAAAAAAAGATCCTTATATGTTTTAAAGGTTTTGTGTCCTTGTCACGTCTTGCCTTG
CAGGGTAGGCAAGGTTGCGCAGAATAGAAATCACAAGGCTCACCTTAGTTTCAACCGCTG
ACACCAGAGAGCCTGTGGTGTTTCAGTCCCAAGCATTGTCGGTTTCCGACCCTGCAGACC
GTGCCCGGCACTTCTGACAAACTCAAGGTGCTCTTCGATGGGCTGTTTACCTAACACGTG
AGGAAGGATGCGACTCGGTGATCTTTGCCTCCCATTGCCTTTCTCTGGTGCAGAGGTTTA
ATTCTCGTGTTCGTGGCCGTTCGTTGGTGGATGCTGTAGTGGCCGATTGTCTTTCTCTGG
TGCAGAGGGTTAATTCTCGTGTTCGTGGCCGTTCGTTGGTGGGTGCTGTAGTGGCCGATT
GCCTTTCTCTGGTGCAGAGGGTTAATTCTCGTGTTTGTGGCCGTTCGTTGGTGGGTGCTA
TAGTAGCGGACATTGAGGATGGCGCGTCGCACATCTCCTCTGTTCGATTCAAGCATACTC
GTCAGCGGTCTAATGTTTTAGCCCATAACTTAGCTAAGTCGTGTATGAACTGTAATTGTC
TCTGTTTTTCCTTTTACTCCGGAGTGTATCCAGGAGACTCTATCTAGCCTTGTTGATTGA
TTAATAAAGTGCCGATGTTTCTGAAAAAAAAAAGTTGCGTAAAACAAAAGCCACACGGCC
TAACACAAGAATTTTTATTCCCTGTATATAAATGTGCTCTGAAAACACCATAGCTCCACA
CTACGAGGCCACAAGGCTTACTGCCAATTCTTTCAGCCTGTGGAAAAAATACACTTGTCC
AGCAACAAAATCAAAGTCAACGCCATTGAGACAGAATTTTCAAGAATTAAGGCCTCGGGT
ATCGTTTACTTGAGAAAAGAAATAGGCTACCACACACACGGTGTTAGCGTCCCAGCAAAA
GCCTAGTGTAGAAACAATAAAACTATATATGAAGAAACTATATCTCTGTCAGCAATGCAG
AAAACCAAGTTCTTTCTTCTTTTCTTTTATTTTTAGTTTTTTTTTCATTTTGGCAAATAT
CAATGCAGAAAAATAAGTTGATGAGCGTCAGGCAGTACATGAATCCCTGCCAAAGCCGGC
ATTATGTTCAGGTCCTTGCTGGGGAGAGATGATGACTACTGCAGCATTCAGTCCCAGGCT
CCCCCCACCGAGGCTGCCGAGGATCATTAGCAAAACTTCAGCCTGATTGAGAACCTTGCA
AATTGCAGAGAACTCTCCTAACTAGAAAAGTATACTACAGATTGCCCTACGTAAGCATCT
ATATAAGAATGCTCGCGCATGCGCGCACACACACACAACACACACACACAAATCAGCAGT
CAAACATCTTGTGCTTCTGTATATAGTCATAACTAAAAAGACAAATTCTTTATGCACAAG
TCTTTATAAGCATAGGGGCCTAGCCTACATGTGCTATATGAAGACTTTGTAAGCATCAAG
CAAATGATATAGGCACACACACATAAAAAACAGAGCAGCAACAAAACATCTCCTGCTTTT
GCATGTACTAACTGAGAAGACAATTAAGTTTTCAACACAAGGATGTGTTCCTACCACAGC
TTAGGCAGAGCAAAGCCGCGAACGATTGCACAGGATAACACCGTAGCCAGTAGCAGTTTT
GGCAGATGGGGTTACCACTTACCAGCTGTCACCAGTTACAACTTTCAGCAGTGATGTTTT
TGCATCCTTCCCCATCAGAAATTTCCCACCCTGTTTTTGCATCCAAAAGCATCTCTTGCA
GTGTTAACAGTGGCAACTTCAAAGTTACTTGAATTGCAGAGGAACCTTAGGCTAGAAAAT
AGAGCAGGTCTATGCAGAACAGGATGCGATCTTAAGGAATCAATACCGTCTACAAAACAA
GCACAGGACACTAAGAACAGTGCAATCTTCAGGCACCAACCCTGTCTATGGCTGTTCGAA
GGGGTCAGCCACTGACAGATCATGGATATGCTTGAGGAGATGATTCTCAGTATCGCGATG
TCTACTCCTGAATTCAAATTGGGCATCTCGAGAAGCTCTGTTTTCCACTCGTAGCAGCGT
GTGTTGGTAAGCCAGCGACACGCTGTCATTGGCACCATACACTCCTTCAAATTCAATGTT
TTTTAGCACCTTTGCATTCAAAACGAAGAACCTGGCAAAGTTAAGCTGTTTATCATGGCC
CACGAATGTTTCAAACACCACTGTTTTGAGATGGGTTTGAAGGCATTCAATTGGATATAG
TCGGTCATACTGAGGCTCGATTTTCTTATCTGTCCCATGGTGTTTGTGAAACTGCAAAAT
GGATATTAAGAAACTGTCAAGCATCTCTGTGATAAAGCTGTTACAAACAATATTCCGATA
AAATCAGAAGTTTTATAGCAAGCAAAGATGAGCACTCACAATGATATAGAGCTTCTCGAG
ACAGGGGAACTTCCTAAGGATATTAAGAACCCCATCCAATTCATATCCAGAACACCTAAG
AGCCAAAATCTTCACGGTGTGCATCGAGTTTGCCAAGCCGACTGAACTTACTCCCTGAAG
AAAACAAACAATGAACATGGAAAAAATAATTATCTCCGTGTAGGAAACTAGGAATGCCAA
ATGCAAGGTTCAAGGATGATGCTGGTGCTACCTGGGAGACGACAGGCAACAAAGGGCCCA
ATATCTCCAATTTAGGCGCGCAAATTACCCGGATAGTACCACAATCATCTCGGCGATCAA
AAGGTATTAGTAACCTCACAAGGCAAGGCGCATCCTCGATGACCAGCTCTACTTTACCAC
GGGTGTCACGGAAGCTTATACTCATAAGAGTAGGCGAGCGAACACGGAGGCAACGCGCAT
CAAGAATTTCGGACATTTGTAAGCTCTTCAAGGCACGGCAAGCAGAGAGCAGCCCGTGGA
AGACATCCACTGAGATGGATACGGAGACCAGGGAGAGATGCTGGAGGAGGTCAAAGCCCA
CGGACGGCACAATCTCTCGGGGCAAATCACAACAGCTGATATTGGCAACTAGGAGAGTAG
GTGCAGAGCGGAGCGCGGATGGCGGCAGCGGGTTTCCCTCCCGATTAAGTACATCGCGGA
ACGTGTAGCCGACATCGAGCTCGTCAAGCTTGGCAAGGGCTCGGGAGCGGAACCAGGTCT
CTACCTGGTCGTGCAGGTCGCCGGGAAGGAGTCCGTGGAAGCAGAACCGGCGGGCGGGGC
CAGGATGCTGGGAGATTACCTTGGAGACGGCATCGGGGGAGATGGAGGAGGTGCGGACGG
GGACGCCGAGGCCGGGGTATGGGGTGCGGACCTCGAGGTTGAGAGGCGCGGAGCGCCACA
GCGGGCGCCATCGGCGGGAGAAGACCTGCGTGCGGCCGCCGTCCTTGGTGGGGAGGAGGG
AGATGATGGTGCAGAGGACGGCATCGGGGACCCTGCTGATGAAATCGGCGGCGCTCTCGC
CACAGTCGCCATACCGTGCCGTCTTCGCTGCGGTCCCATGGGATTCCCCCTGGTCGGGCA
CGGGTGCCGCTGGCGCTGCGGCGGCCTGCATGGCCGGCGGCTGGCTGGACGGCAGATTTG
GCCGCAATGCTCTCCACCCGCCGGCGCACTCGCAGACACGGCCGGGGAAATGGGGAACGG
AGTGGGGAGTGAATTGGGGTGTACAGGACAGCTAGGGTTGGCCAAATTGACACTTTCTTT
GTTTGAGTGAGAGAAAACTTTCCAAATTTCGCTGAAAATGCAAGAAATTTTGACGGAAAT
GGAATGGGGAAGGACCGAAGGAGTGGCCTCCACACACACACACACACACACNCACACACA
CACACACACACCCCTCCTTCGGTGTGCAGTTGTTGTAGGCTCCGCCGCCGCCGGAGAAGA
AGGGCAAGGTTTCGGGGATGAAGCGTAAACAAGGTTCCTACGAAAAGCCCGGCGATTTCA
TCCTCTTCCTCCGCCCCGGCAAGAGGTAGCCCGATGATGCCCTTCAACGGCGTTGCTTCC
ACCGCAAGCGAGGTGTTTGACGAGATGGCCGATTCGAACGATGCCATAACCGAGTTCATC
AACTTGTTGGACACCAACACCGTCGACATCGATCAATTACAATGAAATGGATGGTGACGT
GGATGGTCACGATGGTGAAAATGAGGTGGATGAGATAGACGAAGGGGTGTATGATCAAGC
GCAAGCAAAAAAACACGAGATCGAAGAACTACACGATGTTCGAAGACCAATTCTTGATAA
AGGCTTGGAGTGCGGTGTCTCTCGATGCATGGCCGACACATCTCAAACAACCAAGAGGTA
TTGGCAAATGATCGAAGATCAATACTTACGCATGATGACAAGGTATCCCAATAGGACGAA
AGGTTGGGCATGACGGCCATTTAGGACAGACGAGTCTTTGCCAATGAAACCAAAGCCATG
GCCAAGCTTTTTGCCGAGGAAAACAAGATCATGACATTGAGCCGTGATGGCATGGACGAC
ACACCAAAGAATGGTATGATATGGCAAGGAGAGACATCTTGAAGAGGAGGATGGCAGCGG
CGGCCGGCGGGTGTTTCAATGTCGGTGATGTTTTCCCATCAGGAGTTGGAACCAGCGCCG
CTGATGCTTTCAGTGCGTCCGACTATGTTTTCCCATCAGGAGTTGGAACAAAGTGTCGAT
TATGAACACTGAGACATCAATGGCATCGATGGCGGTGGTGCGGAGGACGAGTGAAAAGCG
ACCAAGATGATGATGGACGTGGTCGTTGGTTTTGCATGAAGTCCTTTTGCGTTTGCCATA
GAAAACTATGCTTTTATTTGCGCGTGAACTATGTTTTATTCTTCGAATTTGAACTCAATT
GTCGGAATTGCAGTCAAAATTGGCTAATTTGGGGTTTTCGATTTGCGGGCTGAAGCGGGC
TGCGGCCGAGCAGATCCCGCCTAGGCGACCCGTAAAACAACACATTCTGCGAAACGTTTA
TTTTCAAACTGTAAACAAGTTTTGCGGGTCAGAGTTTTATGGGGTCTGCTAGAGATGCTC
TTAGGACGGGTTGGATTTGAGGCCATGGATATGGAGGCGGCGACACCGACCGGTAGTCCC
ATAGTTGAAAATCGAACGAGGATCAGTACGGCGGCGGTGGCTATGCCCCCCTTGGTCGTC
TGGTCGGCGAGTGTCATGGCGGATGGCTTGAGTTCGTTCTCTTCCAGTGGCAATGTGACA
TCCTCGACTTTTGCTACAGTGATTATTGTAATT