Contig Data
morexGenes
Links



Map Locations of contig_2549888 (5593 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2549888

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38189 3 2290 bp MLOC_38189.2 Available Available LOC_Os03g64320.1, FRAME:+2, EVALUE:0.0, 13103.m07146 protein expressed protein





CDS Structure of MLOC_38189






Contig Sequence (5593 bp)

>contig_2549888 5593 assembly3_WGSMorex_rbca.fasta
AATACCTTTCAACACAGCCAATGGGAGAATTAGGGCCAGGCAGATAATGTCTGGTGATGA
ACTTATGATGTCTGGGGAAGGGCGGAGCTTTGTGGATGGCGACATGAAGGAGATAGAAGC
CGGAGGTGGGGGATACAGAAGAGGGGCAAATGATGACTTCATGGTTTATGGACATGACAA
CTCAATGGACAGGGGGAGCTCCTTGGACCCCCTTGCCGAGGGGCATTACAAGAGACCCAC
TGTGGAGGAAAAGAAGAATGTGCACGGTGTGGATGAGTCTTTCATGATACCTGTTAGCTC
CAGCTCACAGGATAACCTTGGAGCTGATGGCCGTACTGCCATTGACATCGATGCCGAGCT
TAGCTCAAGTGTTGTTCACAAAACATCAGATGATGCTAAGGCTGGAGCTGAACTGTTCTA
CGAGCCAGATGAATTGATGCCAGAGCGTGGATTTGAAGATGTTTCATTTGGATATGACCC
ATCAATGGACTATGATAGCCACATGCAGATTCATCCTGACGTTGGTGCTGAAGATGCAAA
TGCAGAGAATTTATCAGCTTGCGTCGAGGACGAAGAAAAGATGCCAGGCAAAGATAAGAA
GCTTAGAAGCTCACAGGAGGGTTTGGATAAAAGAAGGAAGGATGCCTCAGCAAGGAGATT
GTCAGCGCCCAAAGGCCCACTAACCGATGCACAGAAACGCGCGCAAAACCTACGGGCGTA
TAAAGCGGGCCTTCAAAAGGAAAAGAAGGAGCAGGTACCCTGTGATGCATTACTTCCCAT
TTTACTTACTTTTCTTCTGGTTTACTCCTTTCTTATGGTTTTAAGTGTGGCCCATATGAC
TTAACTTACTCATTTTTCAACATCCTCATTTGCACCTCATCGCATATTTTAAATGACCAA
ATCGGATTTGTATACAACAAAGTGCTATAGTTATTATCTATCTCCTTTTGGTGTGGAAAA
GTTAAATTAATACCCCCACCATGCTCATATGTATCAAATGCTATTTTTCCATCATTGTTT
CCTGCCCCTGTTAAACTGTACTCCCTCTGTAAACAAATATAAGAGCGTTTAGATCACTAG
ATTAGTGATCTAAACGCTCTTATATTTCTTTACGGAGGGAGTTATCTAGTGATCTAAACG
CTCTTATATTTGTTTACAGAGGGAGTACTATATGTTAATATGTGTCTCTACAACACCACT
ACCTACAAGCAAATAATAGGGCCTAAAAAGGCAAACTACAAATATCTGCCAGCCGAAAAT
GGTTTCCTGGATTTCTTTGTCATATTGGTTTTCACCACAGAGTTATGAATGTCATTTGTT
TGCATTGGCAAGATTGCTCAAACCGATGATACATTTTTCTTCTTCTAAATATTTTCAGGA
AGCCGAACAGATCAAACGGCTCGAAAGGCTTAAGCAAGAGAGGCAAAAGAGGATTGCTGC
AAGAACTGGTGCATCTAATCCAGTATCAACACCGCCGCAGGCTAAAGCAAAACCTTCTCC
AAAGGTTTCTCCAAGTACTCACAAGAGTTCGAAGTTCACTGACGCTGAACCAGGATCCTC
TTCGCCTCTAAGAAAAATTATTCCTGCCAGAAGCAGTACCCCAGGGAGTGATCCTCAGAA
AACAGCCAAAGCAAGCAAACTCGGCGGTGACAATTCAAGTGCAGTGAGCAAGTCAATCTC
ATCCTTGGCCGACATAAAAAAGGAGAGAAGTGGCAAAACTGAATCGTCCATTGAGCGATT
GAAAAAGCTTGCTCAACCTAAAAGCAATACTTCAACTGACCATCCTTCGAATCCCAAGTC
AGCCAGCGTGGACCACCAACGGAGAAGAAGCTTGCCGGAAGATGTGCAGACCAAGAAAAT
CTCCGCCATAATGCAGCTCGACGAGACCAAATCGGCAGCCTTACCAGAGCTGAAAGTCAA
ATCCCCACGAACCCCTGCTGCTGTCGTTGTGAAGAATAGGATGGTGGCTAAAGAAACAAA
AGAGGCGCCACGTGGTGGAGCTAAAGCACACCCTATTATTTCAGAAAGTAGAGATGGAAA
GAAATCTTCCAACAGTAAAGCTTCCAGGATAAGCAACAGCGATGACAATGTGGTGGTTGA
GAAGACCGTTGTTATGCTTGAAAACGAAGTGGTCTCTACGCCTCCTGTTGTTCTACCTCC
TGGAAGAACTGCAGAGAGCGAAGCTCGCCGCAGTGACCGAATGGAGAATCCCAGTCTGGA
ACAGGAGTATACTGCCATCAGGGCTCCACCTTCTCCGGTGGATCTTCCTGAAGATGCAAA
TCCTATCATCCATACATCTGACAACCAGTTAAATTCATACGAGGTACGTATGATCCAACA
CTAATACATCCCCAGTTCATTTACTTGATGCTCTGTTCGTTGGGGTATCTGTTTTCTTGT
TTCTCTTCAGTAAGTACTTTTGAGCTCGGATTTTCTATGCAACAGCCTTCGGCTGAAATG
CAATGTTATTCCCACGTTATTGAATCAAATATTGCTTTTACATTTGTTATTATTATTAAT
CAAGCCGACATTGATAAGGAAATGCTTGTTATGGCTAGGTGGATGTGCCCGAGTACCAGA
AGGATGAGCTTGAGAAGCCAACCTTACCTCCCATGGAGAAACCTTATGAGGCCCCTTTCG
CCAGGGTAACATCATTGGAGGATGCTTCAAGCAAGGCTCCCGCTTTCAACCACCACCCAT
TACCCGCGCAGGAACCCGAAACATTTGCCCGTGCAGAGAGCGTGAGGGCACGCGTACCGG
AGCCTACTGCGTATGCAGTCTCAGCCGAGGAGACACATGAAGAAAACGACAAGCCTCGAA
GCAAAGAACCGAAAGGCTTCAGGAAACTGCTGAAATTCGGGAAGAAGAGCCATACTTCAA
CAATGGATTCCGATGCGTCATCGGTCGACGAAGCCCCTGCAGGAGATGGTAACTAATCAA
GCAAGCTGTGATCACACTATTATTGCGAACACTTTGCCCATTAATTGCCGTAATTAATTA
TTAACCGTGCTTCAATATTTGTTTCATTCAGGTTCGATGCTGAAAAACCTCATTTCACAA
GACGACTCCGCGGGCTCTTCTTACAAAGGTTAGCACATCACTATGTATGTATATGTAAAG
TAATATATAGAATTGCTCAGCGATGGAACTAGCATAAGTTAATTTTCTCCCTGATATGAA
ATGAAATGAAATGGAGTAGATAAACATACATGTTTTTAACTGTACAAAATGCTGCAGCTT
CTCGGTCCTTCTCCCTGCTGGCGCCGTTCCGCAAGAACAAGGTCATCGTGCTGTGATGTG
ATGTGAGGATTTTCTTGGTACTATTTTTGTTGTTGATGAGGCTGGCTTGATTGGGTGTCG
ATTGAGATAATTTAGTTTGATGATTTCTAGTACGTACATACATACATACATACGTGCATA
TTATATATATATATACTTGCACTCTACGCTTGTGTTGTGTTGTTTGTAATCAGTATGTGT
AATCCTTTACATTGTATTTGCAATCTACACGTTAACGCTTGCTTGCTCGTATATAGTCGT
GGATCGGACGTGTTGATCTGAAAAGGTGCGTATTGGTTCTGGTGTATATATACGCAGAAG
AATAAATAACTTGCATGAATGCCTATGGATCAGCTAAATCGATTTATGGGTAGATTCTAT
GCCTTTTTTCCCCCAGTGATTTATAGTTTGCCCACAGAAGTTTACAACCAGACAGCTGGG
CTGACGATGCCGAGCAGACACCGATGCGACGCGAGTCCCCTCGCATGTCTCAAGTATGGG
AAAGAAATACAACCTTTGATGACGAAAAACACCCTAGATCTAGTTGATTATTATTTTTTT
TTTTTTTGCGAATCATCTAGTTGATTATTCCATAAGGAAATCCACATGTCTGATGATGCT
GGAAAGAATATAATTATCTGTCAATCAAGAACAAAAGCACTCGATCGAATTAAAGGGAGC
AAGGAGGCAAAGAACAAAGGAAGCTTGTTGTTGGCTCTCACTCTTTTTTTTTATTATTAT
TATTTTTTGAAAGAAAGGGGTTTCCCCCCTGCCCTATTTTATTAAAATGAAGCAACATTG
TCTTACATATCCTCCAAAGCCACTAAAGAAGATCTAAACAAACCATAGCCTAGGCAAACG
GCCAGCACTTGAAAGGTTTATAAACCAGCAACCACAAACTTGGAAGAAACTAGCACCATC
GTCACGTAAGGAGCCTTAGAATGCTTTTATTACAGGCCAAAGAAGGAAAAACGAGAGAAA
ACTACTCGGCTCCCCGATGGTCTCCCAGCGTCATCTCCACGCAATCCGAAGCAACTCCCC
ACGTCTCTTGTTCAGCAACCTGATATATCCCCGTAGAAGAACTGCCTGGGCATTAGTGAA
TAGTACTTTTTATTGATTTAGGTAAACGTTCAGCTTGGCAAGAATGCATTTTACACTTCT
TCAAGATCGCCCTGAAAGCAAAATTCATTCCTCAGTTTCCAAATGCTCCATAAGGAGGCA
ACAACCATCATGTTTGGTACAACATTAGTCTTAGGACTACCCCACAACAATGCAACATCA
TCAAAGCTTAAAATTTCCGGATTGTTAAACACCTCAAAGATAAATCCCCAAAGCTGTTTA
GCAACCACAAAGTCAAAGAACAAGTGTTGCACTAATTCCTTACAGCTACAAAAGAGACAA
GTAGGATCTTCCACCGGTCTATGTTTTCATGGTTATCTCTAGTTAAAACTTTATTATAGA
TATATAACCATAAAAAACATGTATTTTTTTGTGGACAGACCACCTTCCAAAGGCTATCAC
CAATGGTAGATACCACACCCCCAAAATTAATTTGCTCATAGAAAGACTTAACCGAGTAAG
TGGCATTTGACTCCAGTTTACACACAGGAGAATCAGGTTCTCTTGAGAGAGGGGTTTGTT
TCACCACCTCAACAAGTTGATCCCAAAGTGTTAAAGTTCCTGATCCACACATCTATGGAA
TGTCAGTCTTAGGTCCGACCCGTCCCAAACTTGGGCCACTGTACAATTTGTCTGATTACA
AATTTCAAATAATTTCCAGAATTGCACTTTAATGGAACAGTCCCCGGCCCACACATCATG
CCAGAAGTTAATCGGTTCCCCATTCCCCAATTTCCACTTATAAAATACTTTTGCTCCAGA
TAGAGCCGAGGTAATTCTGTTCCAAAAGGTTTAGCCATTCCCACCACAACTCCAAAGAAT
ATTTGGAGAACTAACATTATACTTATGACTGATAATGTTTTTCAATCTCTAGCCGAATCG
TCCATGAATCGCTTCCCCCATCAGGCCAACAAAGCCATGTTAAACTCTTTGATGTTAGGA
ATCCCTAACCCTCCGAATTCTTTCTTCCTAGAATTTTGCCCCCACATGGCCAAGTGGTAT
TTGTGTTTTTCATCCAAATCTTCCCCAAAAAGTGAGCCATTTGGGAGTTGATAGCATTAA
TTGCCCACTTAGGAAACCTAATCATGGACATGAGGTAAGTGTTGGAAATATGCCCTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTATTTCCTGCTTCAAGATAATCGTTTATTATCGATG
CGATAATTGTATT