Contig Data
morexGenes
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Map Locations of contig_2549830 (4570 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2549830

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38158 1 516 bp AK250020.1 Not available Available None
MLOC_38157 1 247 bp None Available Available None
MLOC_38160 1 1002 bp MLOC_38160.1 Available Available None
MLOC_38159 1 470 bp None Available Available None





CDS Structure of MLOC_38158






CDS Structure of MLOC_38157






CDS Structure of MLOC_38160






CDS Structure of MLOC_38159






Contig Sequence (4570 bp)

>contig_2549830 4570 assembly3_WGSMorex_rbca.fasta
CGTGGGGGCGCGCCGCGGCCGCGAGCGGCGCGCCGGCCAGGAGGAGCGCCAACGCGGGCT
TCCTGAGCGCCGTGAGCGTGTCGAGGAGGGACCGCCTCAGCACGTCGAGCAGCGGGGCGG
GGCGGCGGCTCGGCGGTGACGGGGCCGGGGGATGGCTGCGAGTGGGCGCGGAGGTGCGGG
AAGCGAGCGTGGGATGGGAGGGGCGTCGGACGGAGGTGGTGCAGGCCACACGCCAGAAAC
GAAACCTTATCTTAAGAGAAGGATCTCAGGTGGAATACTCCAAAACGCAAGGTTCTTTTT
GTAAGAACGAAACGTTTTCCTGGTTAGTCACTTAAAGAGGGACGACGGGTTAATTACGTA
AAAAGACAGGGATTTTTTCACAAAAATGCCACATTGGACGACCAGAAACCCTATTTGCTT
TATTATTAGGGAGAGATTTACATATTTCCAAAAAGAAATCAACCAACCAGGATGAAAAAG
GAAAACAATTAAGAAAAAAATAAAAGGGAAAATAAAGAATAAAGCAAGTAAAAAGTTCAT
TTCTATCCCATACTGTTGGGGTGGCGGAGTGGTTGCAACACTAAAATATCTCTGAGAGGT
TGCTGGTTCGAATATCAGTAGCGCTCTTTTATTTTTACGGAAAAACACCTAGATGGTGTG
GCCCATGACCGAGCACTACAGGCCTCGGTTAAGAAAAATGCACTTTAATCGACGCCTGCA
GCGCCAAATAGGATTTGCGAAAGTTTTTACGGAAAAACACCTAGATGGGCTGGTCCATGA
CCGAGCGGTGCAGGCGCCTGTTAAGAAAAATGCATTTTAACCGACGCCTGCAGCGTCAAA
TAGGATTTGCGAAAGTTTTGGGCTAAAACCAAACACACCCTATGTCCGAGCAAATACCTA
GATGGGCTGGCCCATGACCGAGCGCTGCAGGCGCCGGTTAAGAAAAATGCATTTTAACCG
GTGCGTGCAGCGCCAAATAGGATTTGCCAAAGTTTTGGGCTAAAACCAAACACACCCTAT
GTCTTTTTCGGAGAGCACAGAGTTCAGAGGCCCATGAGCTTAATGATGAAATAGCCCAAA
CGACCCTTCAGCCCAATCCCGGTCCTATTCTGACACGTTTCCACTCCATTAAAAAGCCCG
TTGCTCCTAAACCCAATCCCGAATTCCCCCAAGTCCCCGAGACACAAATCCAAATCGCCC
TCGCGTTAGGTTAGGCCGAGGCGAGTAGATTGGACTTGGAGCTCAGCACGCGGCGGCCAT
GGAGGACGAGGAGCACGAGGTGTACGGCCAGGAGATCCCCGTCGACGCCGAGGACGTCGA
GATGGGCGCCGGGGGCGACGACGCCGCCAAGGTTCGTGACGCGCCCGCCGCCGCCGCCGC
GGCTAGCTCCGCTTCTCCCCCCCTGTCCCGGACCCCAAACCCTAACGACGGTGCTGACCC
TCTTCGTGTCCAGCTGCACGAGCTCGACGAGATGAAGCGCCGTCTCAAGGAGATGGAGGA
GGAGGCCGCCGCCCTCCGCGAGATGCAGGCCAAGGTCGCCAAGGAGATGCAAGGTGAGTG
CCGTGTCCGTGTACGGAACCTGTCGGTGTCAACTTTAGGACCCGCATACGGGGCAGGGTG
GTTGGGGAATTTCAGATCCGGGACACTACTGGAACGTTTGGTTCTCGGGCAAGCGCTGGC
CTCACCCAGCCCAGCATGGAGGCCAATGGTTTTGTTCCTTGGCGAGCTCGCCTCATTACC
CAGCTTTTGGCTTGCTTCCGTTAGCAAGTCTAGGAATCCTAACGCGCCCTAGGATCGCAT
GTTCTCTTGCTGCCGATTAGTATGGGTATGTTAACCAGCGGAGTAGGTTCTACGGGGTCG
TCTAATTACTTCAAATTAGTCCCTTCGTCGTTTCTTATACGCGATTTTGGTAGTTTGCCT
GCCTTGAGATGCATATAATGTTGTTTTACGCATTCATAATCCTCTTAATTTCCTTTTAGA
AAAAGAACCCTCTTAATTTAACCAGTTGGTGTGATGGTAGTTCTGTTTTGGTAAAGCATA
ATATGGGAGTATTATGTAACCTTCCACAAAATGATGTTTAATAATAACTGCCTCTTTGCT
TGCCAAAGCATATCCAAATGGGTGTGTCTAGGGCACATCTAGATGTGACATGGTTATTGC
ACATTTAAATGACTAAATCAAGCATAAAAAGGAAATGAAAAAAGAAAAAGACACATGAAT
CTCCATGTAAGATCAATGATATAGAACTTAGGTGTGCAATACTTATCTCACATTTAGATG
TGCTTTGGCAAAACCGTATTCAAATGTAGTAACATCATATTCCTGTGTTGGATCAATCTT
GGAGCATATTATTTTAGCCTTTGTTACACGGTTTATGCTGTAATTTCTACATCAATATTT
CCTTGCTAATGTGTAATTTCTATAAACACATTGAGTCTTTGTACCCATGTAGGCGGAGAT
CCTAATGCGACCACATCTGAAGCAAAAGAAGAGATGGATTCTCGTTCTGTTTTTGTTGGA
AATGTAAGTTTTCATACCGTTGTTGTCTAAATTTAGTTGGCACTCAGTACATTTCCCTCC
GTCTCAAAATAAGTGTCTCAAGCTTAGTACAACTTTGTACTAGAGCTAGTTACAAAGTTG
AGACACTTATTTTGGGATGGAGGGAGTAGTAGTTATGATCACCTAGGTATATGCAATACA
ACTGATACCATATGTTTCTTTTTACATGCGACAATGTTTGTTCTGCTTGTGAAATTGTTT
ATAGAAAAGCTGATGTTCAAGTTAGCAACATGATTTGCTTGACCAGCCCAAATTTTGTTG
AAAGTGCTCTTAGATCAGGTGTTAATGTTTCCACTGAACATTCTATCTTTACTTTGATGA
TTTTTGTTTCTATTCTCAACAGATAGTGTCATAGTGCCAATCAGCAAGGTGTTTAGTCCC
GTAAATAGTGCCATAACTTTGAACATGTATCATTGACAATCATATTTTATCAGTGACTTG
AAATGCACTCTGTATTTTCTGTCTTTATCTTTGTATTTTTTTTCTGGTGCATTGATTGAG
AAATGACATTGGCCGCAGGGTAGTCTGCTATCATCAAGTCTTTGAAACCGAAATTTTGGC
ATCTGGCTGAGTCTCAGTGCAAGTTCTAGTGATAGCTTTAGAGGGGGCAAGAAAAAAGAG
GAAAAAAATCCATGAAAAAAAGAAAAAATATTTGAAAAAATAAAAAGGAAAAGAATATAG
AAAAGGAAAAAAAGAAAAAAAAAATACAGTGATAGAAAATGCCCCCGAAAATGTCAGTAG
AGAACTGCTGCATGTACTCCACCTGGCGCTTGAGACTCATACATGGACTGATGTGGCATG
GTATCAATAGCCATCGGTAGATGAGAATCAGTGGCAGGGGTGCATAGGCATGACATGTAA
GTGTGACCTCACATTTTATGTTGTGTCTATTGAAGAATGCTATGTTTTTTCTTTTTCATG
TTATGCCTGCTGGAGAGTTTTATTCTCTGTAGTATGTGTCATTTCTCCCCTTGGAATTAA
TCATGTTTTAATAATAATTAATCTAATGGTTCTTCTGCCAGTTTTGTCATCTTTCAGCAA
AATATAACCAATAGAACTTCCTTTGCTTTTGTAATATCCGTAGGAAGTGTGTATGTCAAA
AATTTACTAGAGTGCTGGTGTTTAGGGGCGTCTATATGAGTAAATGATATCTGTAGTCAT
GATGTTAATAGGCATTGGATGCATCTCAGTTTGAAAGCATGTGGACATATATACCTGCTT
TTTGCTTAAACTGAGGCAATGACAGACTTGCTCTAGCAGTAACATATATTGTGCAGACCT
GTGCAGGCCCTGCTGTCCCCTATTTCGACTTTTGGTGTATGTGTGTCAATATGCGTTTCA
GCCTGCATCTGTGTAGCAAGAAGCTTATGATATGCAACTTATTTTAGAAGGCGACATGCC
TAGATATTAAATAAACATTGCAGGATGAGCATCTGTTTTCCTTTGTCCATTACATCCTGT
TTAAGGTCTAGTGTGTAGGCAGTAGGATATTGTAAATGCGAACAATTAGTTACTATATGC
AGGTCAAACCATGTGTAAGCCATACAACATTGCAGACGTGAATGCTTTTCCTTCTGATAT
GAAAAATTAATACGAGGCCGAGCTGCAGACCAGTACCACTATCAGTTCCAAGTTTATCTG
TTTACACCGTCAGTTCTGTGTACCCAGTGATTTGTCCTCGCATCTGTATAACAAAGTTTG
TTTACTTATATGCACACTCCTTTTGCATCATTATCACTGAAAGTACATTTCTACTCCCTC
CGTTTCTAAATAGTCTTTTTAGAGATTTCAATGCGGACTACATACGGATGTATATAAACA
TACTTTAGAGTGTAGATTTAGAGTGTAAACTACATACGGACATCCTTTGCTCTGTATGTA
ATTCGTAGTGGAATCTCTAAAAAGACNNNNNNNNNNNNNNNNNNNNNNNNNAAGTCTTTC
TAGAGGTTTCACTAGTGAACTACATACGGATGTATATAGACATACTTTAGCGTAATAACA
TCGTATAGCA