morexGenes - Barley RNA-seq Database

Contig contig_2549774

Source Contig contig_2549774

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2549774 (4608 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_2549774

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38135	1	791 bp	MLOC_38135.1	Available	Available	LOC_Os05g38560.1, FRAME:-2, EVALUE:2e-17, 13105.m04047 protein Core histone H2A/H2B/H3/H4 domain containing protein, putative
MLOC_38134	4	2383 bp	MLOC_38134.2	Available	Available	LOC_Os05g47446.1, FRAME:+1, EVALUE:3e-48, 13105.m05025 protein expressed protein

CDS Structure of MLOC_38135

CDS Structure of MLOC_38134

Contig Sequence (4608 bp)

>contig_2549774 4608 assembly3_WGSMorex_rbca.fasta
CGGAGAGGAAGCCGTTCTCGTGGCGCACCTCGGCCAGCTTCTCCTCCAGGCCGTGCTTGG
CCGCGCGGAGCGCGTCCATCTCCTCCGGGTCGTAGGCCTTGGCGTGGCCCCCGCCGTTGG
TGAGCGCGGGGCCGAAGCCGAGGTCGAACTCCGCGGCGGCCGCCGTCGGGGACGCGAAGG
TCTCGTCGCCGTTCTCCATCTCGAAACCCTTTTCCTCTCTCTCTCTCTTTCTCTCTCTCT
CTCTCTAGGTCGCGCCGCGTGTGCCGCTGCGCTGGATGGGGGATGGCAAAGGAGATTTCG
AAAGGGGGAGCCGCCTCTGCCTGCCTGGGCCTCCGCGAATATATCATGGGCTCATGCCCG
ATCCCCAATGTTCCGATCCGACGGTCGGGAAATGCCGTCCCCGATCGGACGGCTGATGTG
GGGCGACGCATTGGAAAGCCTAGCCAGGGTTGCGTCGCGTCCACGGGGGAAAAGCAGAGG
AGGACGGCTCGGCTGGATTCCATCTCCCCACTCGGCCACTCCCCTCCCCACCCAACCCCG
TCGCCGCCGGATCCATTGCGCTGCGGCGAGGACGGCCACGAGGCGATCCCCGCCCTGCGC
AGGGGCACGATGGTAAGATCCGCGGTTCGTTTCCTGTAATTCGTTGGCTGTGTGGCGATC
TCGGCCTGTAGCGCGCGCGCTTAAATCTTAGGGTTGGTTCTTCGGTGTTTTTGGCGATCT
ATGGGTTGTTGACTGGTTGGCCTCGTGTGATGCGTCTTCCCGTGTTGACCTGGTGCGATT
GCTTCGGTCTCGTGGCCGGTGGCCGATGTCGTAGTATAGACAGAGCGGTGGATATTTCCG
AGCTCCTGTGATTTTGCTTGCTACTTCGATTAGGAAGCGAAGTAAGGAGCACGGAAGAGT
TTCTCGACGTGCTAATTTAGGCACTGGAGCAGAGTGACTTGATCTCTTGACGAGTTTTTC
GTCGCCGACTAGCTCTGACTTATCTTAGATGGACCCGCTGATTTGCCTGTTGGCATGTAG
TTATACAAAGCAAGTGAAGAAGGGAAAGCGGCCAATTGATGGTTACGGCACAACTTCGAA
TTGCTTTTTGTTCCTGGAATCCAATTGGCTAGCCTATAAAATGTATTGCGTCATTCTGAG
GCCAGCAGTGTTATTTTGTGTTAACATGACTTTTATGGCTTGCATTTGTGGCGCTTCATC
TGATGATGCACGCTCATTCATTCCTTCATGGGAATCAGCTCTTCAGTTTTACTGCTTTCA
GAAGAAGTGTATGTACTCTCTCTGTAAACTAATATAAGAGTGTTTAGATTACTAAAATAG
TGTTCTAAATGCTCTTATATTAGTTTATGGAGGGAGTACTGTTGAAAGGTTTAGATATCA
TGTGAGCTTTCACTTCAGATTGACAATTTATTGTATATAAAGCATATCAAATGTTTTCTT
CACAATATTATTGTCAGTACAATAGGAAGGAAAATGTTTTAGGCAAGACGGCAGAAAACG
TTAATCTTGTGAAGTTCCGAGTTCGCGCTCTAAAAAAAGCCCTTAACTCTATCCATGCTA
GTATTGTTATATTGGTCTACTACATACCATCTGATGAAACCGAGGTTCTTTTTGGTAGGC
TGACCATGACCCAGAGTTGGAGGCCATCAGGCAGAGGCGAATGCAAGAGATAATGGGACA
GCGTGGTGCGGTAAGCTACCGAACTGCATGATGAAAGTTGAATCTGTACTGGAAATTCGT
AATTTTCTTGATTTATTGACTGGAACGTAATGGTTAATTTTGTAATTATAGCCAAGCCAA
CAAAATGCAGGGCAACAAAAGGCCCAGGAGGAAGCAAAGCAGTATGGTTTTTTTGTCCTC
AATATTCCCATGATTATATTATCATCTATCTTAAGCTATGTCATGTGAAGCTTTAGGAGA
CACTGAGCTCACTTTGTATTTCACACTCAACAGGGAAGCTGAGGAACGCCGGCAGATGAT
GCTTGCTCAGATACTGTCTTCTGAAGCTAGAGAGAGGCGTAAGTTCTCTCTGTTAATGCC
ATTTCGGTTGCATGCAATGGTTGTTTTTTTGCTTGCAGACAAATAATTTGAGCCAGAGCA
CTTACTTTTCTTAACAAATGACAAGTTAGATCACTTTACATTGTAACACTACAGAATATG
AAAACCTTTAGGTGTTTCAGAAAAGTTGCTGCAGTTCTGCAAGTAGTTTCCTTTTTGGTA
GTAAATGTTCTAATTAACGATGACTTTAGGCTGTGAAATAACTATGAGTCTGCTCTTTAA
AGTGGCATAATTGCAGCAGAAAATGTAATTTGATACATCTGCACTCTGTAAAATTGGCAG
TCTCCCGCATAGCTTTGGTCAAGCCTGATAAAGCAAGAGGAGTGGAGGATGTTCTGCTGA
GAGCTGCACAAACTGGTGGAATATCTGAAAAGGTAATACCATGATAGATCCGTGGTACAT
TCCTCTTTTTCTTTGTACGGCAATAAATTTGGTAGAACTTGCTTGTAACAATGTTGCATT
TTCTGATCTGTAGGTTTCTGAAGAAAGGCTTATCTCACTTCTGGAGCAAATCAACACACA
CACAAGCAAACAAACCAAAGTGACGGTATGTACATCTGTACATGTGTGGTAGCTTGTATC
GGTTCTTAACACAACACACTTGCTTAGGCTAGCTTCATTTAAATCTGATCTTATCTGGGG
TGCAAAGTTCTCTGCATTTGTGGTCCTTGCAGTGCAGCAGATGGCAAGACATCTAAAAAC
GATTCTACAAAGATGCAATCTCCTTTATCCCCTTTTGCCTTTCATGCTAACTCTGGTATG
TTTAACAGATTCAGAGGCGTCGCAACGTCCTTGACGACGATGACTAGTTGGTAAACTTGA
TGTAGACTATGCTGGAGCGAATGGGTGGCAGCTGTGTATGCTTGATTCAACAACCGTTCA
AACCTGACAAACTATTTGATTGATCTTTGGGTTGTATATGATCTGGATATTATTTGAGGG
TTTTATTGGTAACAGTTGCATGCGTTGCTTCTACCCCTGAAACTCTCTGCAACACCTTTC
AGTTGTGGTTGATTTATCGAATCATGTTATCAGATAATGTTAATCTGAATGAATTCATCC
TGTTCGATGTGATGTCTGCCTCGGCCTGCCACTACCCTTGGTGGATTGTTTGCTTCTGTG
TTAGTGACAACGAGTTCTTCCTATGCAATGTGACAGCCTCAGCTCGCTACTACAGAGTTG
ATTACATGCTTCTGCGTTAGTGACAATGTGAGTACTCTTTGATGCGAGGATTTGAGTTCT
GTCATCTGCATCGCTTCAGTTTTTTAGTGACTAGAGTAGGATTTTTTATCGAATCTGAAG
AAACTCAGGTTTTGGTAATTCTCTGTTAACTGGTATTTACAAAACTGCCAGCTGAAAAAT
AATTATATTCCATGGATAACAAAGAAAGCAGATATATTTCGTAATGTAAAATATTGTGTA
TGAACTTTTCATGTGCATTGTGATTTGTATCAGGTTGAGACAAGATTTGAATCCACGAAC
TCTATAGTTGCAGCTGCCCAAGAATTTCGTGTCAAAGGAATCTGAATCCAAGAACACTCT
GATTGTAATACTGTAATTCCAGCACAATTCTTACGATGGGATAGCATGGTCAGAACACCC
GCCGGCATCCAACTACAGAGGCAGTCCGAAGCTACAACAAATGTGCATAGAAGGCATGTA
AGGTTTCTTTAGTTGACAGTATCGCTTTAGAGCCTCATCTTGTTTGGTATAGTACGAAAT
GGACAGCAACTCACATTTCATTTTTCTCATTCGACGTTTTCAGAGTAACACCAAGATGCT
GCTCGAGACGAGCTGCTGCTTCTGCTGCTGGTATACTTATTTCAGAGTACTTGAGTACTA
CCAAATACAAGAACAGGACCATGGCAACGCAAACAGTTCGGTTGTTCTTATCTTGCCACC
TTAATAAAGATCAGCACCCTCACACTCCCTCAGTGGCAGCAAGAAATTCAGACCAACCGA
CTGAGCGACAATGGGTTCTGCACCTAATGCAGAAACGGAACATACTGGTGGAGGATCAGG
AAACTTGTGTTGCTACGATATGAAAACACAAACATGGTAGAGATTAGCTCAAGCACCTAG
TAAAACTCAAATCACTACCCTCAGAAAAAAACTCAAATCACTGATACACAAAGGTATCCT
CATTTCTCAATCTCGGTTTTACGAGTCTTCAGCAAGCATTCAGCAATTCCCATGAAATTC
AGTAATAGTACTGCTTGCAACATAAACATTAAGATAGATCGGCAGCTTCAGCTCATACAA
CGAACGAGCCAACAAAGTGTTGGCAACCATACAGCATTCAGACAACAACTACTACTACTT
CTACTGGCAGTGGCAGATAGATAACCAGGTCAGCAACCACTAAGAGGAGACAACGGCAGA
CAACCGCATCTGCTACTTCAGGCGACGGACGCATCGGCAGTCTAGGAGGAGGTGAACTTG
GTGACTGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGG
CGGACGGAGGTCTGGATCTCCCTGGAGGTGATGGTGGGCTTCTTGTTG