Contig Data
morexGenes
Links



Map Locations of contig_2549739 (4208 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_2549739

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38120 2 2406 bp MLOC_38120.1 Available Available LOC_Os04g58630.2, FRAME:-2, EVALUE:2e-77, 13104.m06162 protein DNA mismatch repair protein MSH3, putative, expressed





CDS Structure of MLOC_38120






Contig Sequence (4208 bp)

>contig_2549739 4208 assembly3_WGSMorex_rbca.fasta
GCACAAGCAAACACTTTTGATTTTCACATGATGTTTCCTGATAATACATAATTATATAAT
GCATTATAACATCCACACAGATCAAAGATATTCATTCTCGATCGTCGTTAGTTATTGCAC
ATAACCAATGCCTAGAAACTGGTTTGTATCCATAATTTATAACCTCTAATAACCAAACTC
TTTAAATCCATAACCAACTATACCCAAACTGGTTTCTTCACATACCCAAACCAAAATCAA
ATTAAAAAAAACTCAATCCAATAAAACCTGAACCAATCAAACCCAAAATAAAAACCAAAC
CATTACACCCGGTTTTTTAATAAACATTTTTAGGTTTAGCCTTGAGCAAGCGCGCTGACA
GCAGGAGGATGTGCGGCCAAGAGACGTTCCAGTTGGAAAGCACGTCGGCGACGAGGAGCC
TCCTGAGGCCGCGGAACAGCGTGGCCACCCTCGCAGCCTCGCTGACTCCTCCATTTCTCA
CATTTTCTCGTCAAATGCCACTTAGCCAACCGAACCTATGCCGGGAAAGTCACCGCGTTG
TACATCCCCTTGGTTAGATGCAAATATGCAGCTACACACTAGCTGCATGCCCAGACAAGT
TAGCTCCACACAAACAGTTTTCGAGAACACAGCTCCAGGGAAACATGTATGTATTCGACA
GACTGAGGTATGGATGCAACACAAAACATGTATATCTCCGTTTCAAAATAAGTGCCGTGG
TTTTAGTTCAAATTTGCTAAAACCAAAATAAGTGTCGTGGTTTTAGTTCAAATTTGCTAA
AACCATGACACTTATTTTTGGAACAGAGGGAGTACTTATACAAGACACTTATAAGCATGC
CACCAGGACAGCAGTAGAACAATATATCGATGAGTTACATGAAAGAAAATGCTTATAAGT
GTAATACAGATGGACAGAACGGAACAGTGCCAATACCTGATAATTCCCCCGTAAGTTAAG
AAGAAATACGCCCCAACAGAAAAGGAAGAGGTTAAGGAAGAAATGAGAGGGTGCTTCATC
ATTTGGGAAGGATGCTACCCATTGATCATCTTCAATGCTATCTCATGTGCACTCTTCAAA
CAAGAAAGTGTATTTGCTATGTCGTTATTGCTTTGAGCAGATCTCATGTCACGCAGGATC
CTCCGGCATGCTTCCATCAACCCCTGGTGAGGCTCTGTAGAAAGCAAACCAAATTTTGGA
GAGCTTTCCCGTTGTCCATCCCTGGATGGTTCGTCCATTAACTTGTTTCCATCGCGCTTA
CTCATTTCTTCTTGCAGTTTGGCTGCCATGACCGATGCACGCTTAATACATCTCAACGGG
AGCTGCAAGCAGGATCACACCTCAGAAACCAATAGATAGGGAAAGGAATGACGGTTAGTG
TTTCACTTCAATATGTTTAAGTACACACTACACTCATTGTTCAAACTCTGTAAGCTCTAC
TTGAAAAAGAAAAGGCTAGCTGATCTATTATAAAGATTAGCCCCATTTCCAAAAACAAAA
CAAAAAGGTTAGACGGCACATACATTTTCATTGTGGAATTAGGAAGTTTATCCCATCTAC
CATATAATGAAACCAACAGGGTATGTGAACCTATTCGTTATTCGCAAGTAGACATGTAAA
CTACTGCAAATATTCTAAAGATGATGAACAGAGGCATGTGGCCATCTCTTGTGTTGATGC
TGTGGTCAGCTATTAGAAAAGGTAGCAGGGGGTAGAGAACAGAAGCTGAATTACTGGTAT
GCTTTCTTATAACTTAGAGAGGATGAGCCGCCTCCTTAGGTCCTAACATACATACTCTAC
CCCACGCTTCTCTAGATAACTTTGTCCCTAACTTGCAACTCCATATTTACTACGTAACAT
ATGGACTTGGTTACACATAAAGCTCAGCTTCCCTACTTGACATCCTGACAGAAACCATCT
TGTACTGTTGACACAGGCTACTGAATTCCTGCAGGCTGCTACCTAATTCTATTTTTATTG
TCCGAGTCCAGCAACAAAGTAATATGGGAAACAGAGGAAAACGACTCAGTTGGACACCAA
AAGAACTGACAGACATTAAAAACTCACGTATGACAAACCTGTGCAAGCAGTGCAACATTA
AGACCAAAGCTTCTGTCTGAAGCTCCAGCAACAAGTTTATACAAGAAAGTAATTTCTCCA
AGATCCTCTGTTTCTGTGCTAATGCCCATTTTTTCATCAGTGGTTTGCAACAGCTTCCTT
GTCGACAGATACGAAACATGGTATGCCCCAACAGAACCTTCAAATTCACTCCGGATATCA
AGAATCTTTGGATAGTGAGTGACAAAAATAACAATGCATTTCTTAACTTTTAGGAGATAG
TGTAATGTAGCATAGGCTATAGCAACACCATCATGAGTGCTTGTTCCACGACCAAGCTCA
TCAATAATAACTAGGGATCGAGATGAGCAGCTCTGCAATATGTTGGAAGCTTCATTCATC
TCTTCATAAAAGGTACTTGTTCCTTGTTGAATACTATCAGATGCACCCATCCGAGTATAA
ATTCCATCAACAACATGCAGTCTTGCTGATGAAGCTGGTACAAAGGAACCAACCTAATGT
AACCAGAGCAACAAGTTATAGGAATCTCCTCAGAAAAACATTGCAACTAGAGAAATCTGT
AACAACTATCAACCTTCTTTTTTTTGCAAGGGAACAACTATTGTCTTTAGCTGCTTTTAA
AAGGAAAAAACATAACTCTTTACCAATGTTTTTGCCACCTGCAAACCAACTACTCGGTAA
AAGTGTTTACTGGAGTAGTTATATTATACATTCACGGCGTGTTTCCATGAGTAGACTTGA
AGCATCGGATAAAACTTATACCTGGGCCATAATGGTAATTAGTGCAACTTGGCGAATATA
GCAACTTTTTCCTCCCATGTTTGGTCCTGTAACAATCTGGCAGTACTGCCCATCTACATG
AAGGTCTGTATCATTTGGAACGAAGTTCACTCCAAGTAGAGACTCCAGAACCTAAAATAC
AACAGCACACCATCACCATCATCGTCAAATAAACAAAAAGTGTTGATGTGCAAAACTGAA
GAAAAGGTATTAATGTGATCAAACTCAGAAGGATTGATCCTGAAAGCCATCAGTAGAATA
GAAAGTGGTCTACAACTAACCGGATGGCGGCCATCTTTGATGTGAATCTGACTTGCTTCA
TTTTCAGGAACAAAATTAGGTTGTACATAATTCTGCAAAAATGGAAGATCAGATCGTGAT
CAATGTCATGTAGGAAAAAAGACTATGTAAAAAGGTGAACACTGGTTAACGGTAGTCTAT
ACATTTTGTTTTGCAAGAGTAGCAAGAGAGTACAAGCAGTCAAGAGCTGCAAGAGATTCA
ACAGTTGCTTGAAACTGCGCATAATATTTGTCGAAATCCATAAGGAATTTGTGCCATGTT
TTCCTGCAGATAACTGCTAGTTCTTCTTTAGCCAGTAATAGGTTGTCCAAGTTCTTCAAT
ACTTCGGGAGTGTGGTATCTAATAGCTTTTTTGGTGCTATTTACTTTCAGCCAATTTGAA
GGCACCTTTCTATCTACTGGTAGCTGCAGACACACACGACAGGTAACATTAATAGCCTAA
CAAAAAATACAAAAGATATTCTTACTACTCAAAACTAAAAATATATAAAGGTTTCAATTA
AGCGATTTAACTTCGATCAGGTAAGCTGTTCCAGATACGGTTTTGTACTCCAAGCTGCGC
ATGCCAAGCTGCTTCCGATATCCAACAATTAATAAATCCAGTTTTTGTTTGGCCATTTCA
ACAGTTACATGGCCCTCTGCAACCTGCAGAAAGATATGCAAGTATGATGCATCAGAAAAG
GTAAGGAACAAACAGACTCTGTTTGTGAAAAGGAGAAGATTTAGGGCCTCATTGATTCGC
AGGATTTTGAAAACACGGGAATAGGAAAAGTAGAGGGTTGGAGTGGCATGTCCATTTGAA
TCCTATATGATTAACAAGGAGTGTTTGATGCCATAGGAAAAACAAAGGAATTGTAAAAAG
AGGTTGAAATGGATGTTAGATTTCCTATGATATGTAGTACAAAAGATTTCATAGGAAAAA
ATCCTATGGATCCAATCCTATGAATCAAAGGACCAATGTAGGAAAAATTCCTAAGGATTT
CAATCCTCTAAAAATCCTATAGAATTTCTTTGAATCAAAGGAGCCCTTAACCTAGATCGG
ATAGGTAT