morexGenes - Barley RNA-seq Database

Contig contig_2549731
Source Contig contig_2549731
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2549731 (6247 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2549731

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38117	1	1941 bp	MLOC_38117.1	Available	Available	LOC_Os05g41750.1, FRAME:-1, EVALUE:1e-34, 13105.m04435 protein RecF/RecN/SMC N terminal domain containing protein, expressed
CDS Structure of MLOC_38117

Contig Sequence (6247 bp)

>contig_2549731 6247 assembly3_WGSMorex_rbca.fasta
AGGTAGAGTTTATGTTACAATCCTCCCATGAGGGACAATACTGTTGCATCGGCTCACAAA
CTCCATTTTCAGGAAGCTCACAACACAGGGTTAAAGTCACTCGTCTGGAAAGCTTGGCGC
CTGGGAAGATCAGGATCTTTGCCTGGCTGTTATACAAGGACAGGCTGTGGTGCAACAATC
GGTTTCAAAGAGGGTGGCCAAATGGTTATTTCTGTCCTCTCTGCTACAAAAACCTGAAAA
TCCGCATGCTCCTCATCTGGTACTGTTCTTTCTAGCAACGCATCTAGCAAGAAGCTGCCG
CCAGGGGAGGCTGCTCCACGTTGCTGCGATCGAGCGAGCGAGCCGCGCATCAGCTCCATC
AAGGTGGCACCGAACATTGTCAGCTCGACGGATGCATTACAGGAGAGGAATCAAGACCAT
GATTCTGTTGATTGCATGGCATATCTGGAAGGCTAGAATCGACAGTGACTTTGGGAGACA
GGCTCCGAGCTTCTCAAACACAATCAGGGAGATCATCAGCAATATGGAACAATGGAGGCT
TGCGGGTGCCAGGGCAATAGAGACACCTTTCGGGGATAGTAGCAAGATAGCCGACCCTTG
ATCAGGGCATTTTCTTTCAATTTTTTCTTCACTTTCTCCTTGGCCTATTGGCCTTTTGGC
CTTTTGTTCCATGGGTCCCTGGGTCCCTCGCTGTTTTCCCGCTGCTTTCTGCTAAATCAA
TGAAACCAGAGCAATCCAGACACTTCAAAAAAAATCTTGCAAAAGCAGAGAACATAAGCA
CACAAAAACGGACGCATAACTTCGAATGGATGCTGTAGTCTTGTGCCGTTTCTACATTAA
CTACATTCCACTAATCATATACACAAGTTGAAATACAGGATCAGTTGATGACAGTTGTTA
CTATAGATTATAACACGTAGGAAGACTCCAACCAGAGTGGATTTCATGCTTCTTTATACT
TGGTAAGGTCGAAGGTGAGGGTTCTGGAGCAGCTGCATGTCAGGTTTTGAGTTGAGGGGT
CAGCGTACGTCAAATATGAAATAAGGTAACAAAAGTGCATTCTTTACCTTCTTTCTGAAT
CCCGATAAACACCAACCAGTGCTTCAGCTTTGTCGTAGAAGCTATCCTTCAGCGATATGA
CAATACTCTGAAACCCACAACCTCTGTCGTCATCTTGCTCTTCGCCAGCACGTTCGCATG
ACTTTGATCGAATAAACCCAGCAACCTTGGCAACATTTAAATTATCTAGAGCTGCATCGA
CTTCATCCAGTATGAAGAATGGTGATGGCCTGAAACTGCATAATTGCCACACATGTTTAC
GTTTTGGACAAAAGGCAAAGTAATAAATGTCCAGGTAATGGTCTGCATGCGGCTCACACG
CATCACAACAAATGGGAGTATTCAAAGAGAGAAATTTACCCTACCAAGCTGTAGTTACAT
AGGCCAAGAAAATAGATTATGTATACTATCCTACATTGAAAATGGTAACTAGAGGTTGCA
GAAGAAACACCAAGATACATAGAGGCAGAATTGGGGCCTGAAGAGAACATGCGACCACTT
AAGCACAATATGTAATTTCTGTAAATAACTAATCCATTCACTGCAAACAATGTTACAACT
AACTGATGGACAAAACTTTTTTCTTAATCAATTACGGGGAACATGATAAAGGAAATATAT
TGCCATGTTTACCAGAAATATTTTACCTGTGAATGGCAAAAAGCAATGCCAGTGCAGCAA
CTGTCTTCTCCCCACCGGATAACTGTTCCATATCCCTAAAGCGCTTCGTAGGTGGCATAG
CTGTGTACTTGATTCCATGAAGAAATGGCTCATCCTCATTTTCTAGATTTAAATATGCTG
TTCCTCCAAGTGGATGTGTGTGACTTTTTGTTAACTGCTTATAGATTTTGTCTATGCCTT
TAGATATATGATCAAAGGCTTCCATGAACAGCTCGTACCTAAGCAAAACAATAGTCAAAC
CCAAAAATATATCCTGAGCAGGCTACATGTTAACTTGAAATCAAAAAGATACATGAAATC
CGGCAATTCTTGATTAAGAATAATCTGAGATGCTTGATTTCAACAATGCTTGATTTCTTC
CAAAAGAATGCAGCATATTATCATATTTTCAACAAGCCTTTCAGACCCAAACAAGTTAAG
GTAGGCTAGAGTTGAAACCCATAAGATAACAAAAACCTAGTCATGGTTCTGGCACATGGA
TAGCTAACTTCCACGCACCCCTGTTCATGGCTAGAAGTTCGGTCTACCCGACCTCTCGAT
ATTATCAGCACGTTTTAATCATCCACTATGTACTGGCGCTTCTGGAGGCGTGTGGTGTAT
ATGCCCAAACCATCGCAGATGATGTTGGACAAGCTTCTCTTCAATTCATGCTACCACAAC
TCTATCACACATATCATCATTAGACGTGATAGAGTTGGGGTAGCACCAACTTGATGGTCA
TGTTTTATCATCTTTTCAACAGTGAATATATCGGTAAGATCTTGTGTAAATATATTAGAG
CTCTGACATATATTGAGCACTTAGATGAGTGGTTTCCAAAATAGAACACTTCCTGAACAT
GCAAATACTAACATAAGTGATAGATAAGTTTAAGCTGTGGTTTCCAGTCAGATATTGCAG
GCTCGTAAATAGAACGCTTTTTCTGACAAACCGTTGTCATGTAATTCAATAACATACAAC
TTGGGTGTATTTGGAGATTATACTGTGAGTTCAATTCCACGCGTGTATAATTATGTAGTA
AACTAACAAAAAATTAAGCATTTGCACAGTGTATCGCATTAACATTGCAAGCATAATGTG
GAGACAAAGCACCAACCAAACTACATAAATATAGAGCATCCATCTAACATCCCAACATAA
TTACATCAACAAATCCATAGATTATAAATTATGCAGCAGTAGTAGACTACCAGAGACCAC
AGGTGCTAGAAAGTGAAATTCCATAAAATTTTGTTAGTCATATATGCCAATCATCCAAGC
GGAACTCCACAGTTCGATCAGCATACATTTTTATTGAAAATAAAGAAACGAGAAAATAGT
ACCATAACTAGAGACAAAAATAACTGGGCAATACCTTCTTTGCTTGACAGAGTTATACTT
TTCAGCTACATCTCGCTCTTCTTTCCTAGCTGCTTCAAACTTCTCGCTCACCTCTTTTTC
CTTCATCTGAAGTGCTTCATATTGGTCCAGTGCTTTTAAGTTTGGAGCGGTGCGTTCAAT
CTCAGCCATTAGTGTACCTATTTTTTGTTTGAACTCTGCCTCAAGTTTGTCACGGTCAGA
CAGACACTTCTCTTGCAGGTAGATTGCACTAAGCTGGTTGTAATCAAAGACAAGTTCTTG
TGAGGATGATCTAGTGTCCATTGCATCATTAACTGTAGGAAGCTTTATCTGCTCCAGTTC
GCACTTCTCATGAATCTCCCGTTGGCGTGATCTAAGTTGAACTATTTGTCCCTCCTAAAA
GAACAACGGTGGTTTCATTACTGTATCGGCCATAAGATTGTCTATAGAAATTGTCTAAAC
ACAAACCGAAACAAAAACACGAAGAAATCAATCATTTAACAGGCTTAAGCCACAACCGTA
TAAAATTGTCTAAATGAATATTCGATGAAAACAATTGTACTGTTAGAGAAACCTACCTTT
AACTTCACTTGACGATCTAGCTTTGCCAATGCAGCAGCAACACTATCATTCTGTTTCTTT
AGTTCCTCAATTGCTGTCTCACATTCATCTGACTTCAACTTCCAGTCTGTGTTAGTGAAG
AGTTCCATGAATCAGTACAAAGGTGATGGGAAAGGAACAAGGTGTACTAAAATTTTGGAC
AAGCTGATATTCGTTATGAAGAGCTCGGTTGACACTCATAAGACACTTTGTATGGCATGC
TCCGTTTAAAATTCACAGCAAGAACTAATAAATTCATAAGGCTGCTACGTCCATAAGAAC
GCTCAATGTTCAAAAAAACGGAAAGCGAACGGAAAGCGTAAGCAGAGCGGAAGGCCACAC
AGCTTAGAGCAATGAGTAATGCGCTTAAGCGTTTTTTTTAAAAAATTGGCCTGAATTTGG
CTGTTTTTTGAATACATACAAAAATATTGAGCATGGCACATAGGTAACTGAAATAGCATA
TAAAATGCAGTTCCCCTTTAGTGCCACTGCTCTCTCTTGCTGATGCAGCAGCTGCAGCAG
CATCACTAGTAGTAGCATAATCTCCTGCCTCCATACTTATACAATTCCTCTGAGATCCTC
TTCAGTGCCAGTGCTCTCTCTTGTGCTGATTCAGTATCACTAGCAGTAGCATCATATCCT
GCCTCCATACTTATGCAATTCCTAGACAAATTTGGCAATGATTAAATGGGATGAGTACAA
GAGAGAGCAGAGCTGCAGAGAAGGGAGGGAAGCACATCATCTCCGGTCTTCGACGACAAC
AACGGCGCGAACAACTATATCAACAAAAGTCACCTCTCCCGACTACAACGAGCGAGGCAA
GCTCAATTGTGTGACCAAGTCGAGCGACTCGCCACCGACATGACACTCCGAAGCCTGGAA
AAGAGACTACATCGACAACAAGTTGGACGCTCACATGGATCATGTTCGACACATGGTGGC
CAACTACAAGTCTTCTTCCCCTTCGTCATCTTCAAGGCGGAGACGCTCAAGTCGCACATC
TTCGAAGAGCCTATCCCATGCAAGCACAAGTCGGCCACGTCCTCATCTTCGAGACGACCG
CGACGACAACCATCACCTTCGTGATCTACATCATCACGAAGGGCAAGCCACCTCCAAGAA
ACAAGTGCGCGAAAACGAAGAATGCCATCGACTACAAGCTCTACTACATCACACTACGTC
CAATCTTCATGAGCTCAAGAGAAGACCGCGCGATGAACGCCACCAAGGACAAGCTTCGAC
GCCAACATCAAGGCGACCACCTACACGCATGGATGACCCTTCCATCTTCGGAAGCATCCC
AAGGAAGATGGCCGAGCATGGAAATCTCCCTTCTGTCATAGAGGCACGCGATGAGGTGCC
CCATCACATGGCCCTCATACAAGGCGACGGCGACAAGACGGTCGAGCATGGAATTTTCCC
TTCAACCAAGGCGGCGAGCACAACCCTCTTTGACAACATGAAGACGGCGCCCACATGGGA
CTCATACTTGGAGTCAAGCACCGAGGCCAAGCTTGGGACGTTTCCTTCGGTCTTGTAGGA
TTGATGATTTGCCACATCCTACGGCATTCATCTTCAGAGGTCTTATGGATGAGGAGGTTG
AACATGGGACTATCCCTTCAACCAAGGCGGCGAAAGGAGTTGAGCATGGAGGCGTTTGCA
CCTACATCTCGACGACGCCCACATATGATGAGATGCCCCTATTTCCATGTGAGGAGAGCC
ACTACCACGTGAGTGAGATGAGTGACTCCACCATATGTGACATTGAGTGTATTTCCTATG
AGAGGATGAGTGTGACCACCACTAGCCCCACACAAGAAAACATGCCATACATCCTATGTG
AGGTTGAGAGCCATCACCACCCTTTGAGTGACTCAACCAACCATATGAGTGAGAGCAACC
TAGAGGGAGTGAGTGAGCCACAACACTTAGTGAGTGAGGTAGTTGAGAGGGCACGCGAGG
CCACTATGATTTCTAACAACTTAACCTCTACTCCTATTGTGTCTTGTTTTGTGCAAGGTC
TCATACGCGAAGATGCGCCTACCCTCAACGAGTCCATCCCTCCAATGGGAATGACGATGG
CCATGGTGGACGATGATGCACCACCCACATGGTTCCATCGTGATGTTGACCACGAGTTGG
TATTTCCCACCTCATCTACATCACATGAGCGGAGCTCTAAAGGTAACATAGGTGAAGGTT
CTTCGCTTGTCCCACTAGTGGACTATCTTGACATTGATTGCTTGCATGATGTTGATCACC
TTATGGATACTTCACATGCTATGTCATGCTATGTCTTCTTCATGCTTAGATGTGCCACCT
ATTTATGATGAATATGATGATGAGCATGTCGAATTACTTAATTGTGATGCTATTCTCCAT
AGGACATGATGTGAAAATTCTTTTGGTCACATCATGTTTGATAATCCCCTAAACTTGTCA
TTTCCTATGAGTTTGACCATCCGAGGCCGTGGCCTTGACTTCGGTCACAAGAGACGACTT
GAATGCGGCTATGGCCAACCTCAGGACATCCTTGACGAACAAAGTCAACACCATGCTTAA
AGAGTTA