morexGenes - Barley RNA-seq Database

Contig contig_2549614

Source Contig contig_2549614

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_2549614 (1985 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_2549614

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38052	2	1142 bp	AK358538	Available	Available	None

CDS Structure of MLOC_38052

Contig Sequence (1985 bp)

>contig_2549614 1985 assembly3_WGSMorex_rbca.fasta
AACCCCCCGCCCCCCCCTCCCCCCCCCCAAAAAAAAAAGACACACCAGCAACCATTTTCC
CTCTCGGAAATCCTTATTTGACGCATTCTGCATCGAACAGTCGTTGTTTCGCACAAAGGA
GATCGAGCGGTCGTTCCATCTCGGTCCGCCCATTTAAGCATTACAACGTCTCCTGTACTT
AGCTTTAAAGGCAGTCCGTTCTTCAATTTTTTTGCCAATCTCGTCATGTTGGCTCTGAAT
TATTACACAGATGAATGTTGGTTCTCTGTGGCAGCCAAAAATCACAGAATAAAGTGGGAA
TTTTACTTGCAACATCAATCTACTGATCTAAAAAATATGCATGGACTTTGATTCCCCAAA
TCCCCATGGATAATTGATAAGATATAGAACAAACTGGGAGCAATAAGACAGGTTGAGTGC
ACAAGAAAAAATCTAGGAAATATGGACAGTATGAGTCATGTGGCTTGACTGAAGATATAA
AACAAACTGGAAGCAATAGGACAGAGGTTGAGTGCACAAAAAAAAATCTAGGAAATGAGG
ACATTATGAATCATGTAGCTTGACTGAGGTTGGGCCAAACAAAGTCAGTTATACATGCTA
ACAACAAAAACTGCCAACAGAGTTTGAGAATCGTTCAATCCTGCAGCTTAACCTGGCAAA
CGTTACAGTTGTAGAACAAACTGACAAACATAAATGAAACTTTTACTCTTTTAGCAAGCC
TCACAAAATACAACAGCTAGGATCAGACGTCATGTCCAGGTCACATGAAAAGTTTGATCC
ATCTAATTCTAAAGCTGTAGGCAAACATGGCAACAGCAAGAGAATTAATTTCAACTTCTG
TTCCTTTGACTAGACAAAATCCATACATGGGACTCAAATCCATGCACTGCTGGTAAAGTT
ATGAACAAAAAATGGCTTCTGAACATTCCCATAGATGCCTGAACTTATAGAGCTGATTGC
CCACGCCAACATATCTCTATAGAACGGCTAGTGCAGAGAAGCACTTGTTAACCAGCAAGG
ACCAACAGAATTGGATATAAGATGTTCACCTTGGTGATATCGGAGGTAATTTGCTCCTGG
CAATGGTTTGAAGAGAGCAGAAATCCACACCATCTCCTTCTCATCCTTCAGCTCAGCTGC
TGTTGGCTTCTCAGAGTAGCAGGTACAGTAGAAATCAGACTGCACAAAATTCACCTGCTA
GAAAAAAGACTACTGAATCTCACGGCAACACAAACAAATAAACAGAGCAGAACGTAATCA
CCAAACCCAAGGGGCCAAATTAATTACAGCATCCGTTATTCAGCCACATCAGTAATCTAA
CTGTGTCAAGACAAATAACACCATTGGACAAAATTGCATGGCAGGGTGAGAAAAACACCA
GGTCAGTAGAACTGACAGTGCATAGAAACACTTGTGGCACAGCAAGGACAAACAGAGGTG
ATGTCGTTGGGTTCTGCTATTGGCTTCTCGGAATCACATGTAGAAAATGGATAAACAATC
GGGCTTGCACGCTGTACAAAGTTTACCTGGTAGGAAAAAGGCCGATCAATCTTACGGCAA
CACAAACACAATAACAAAGCAGAACAGAATCACCAAATCGAAGGAGAATGTTAAATCAAT
TGCTTTTCAATTTTCAGTCACCTAATTACCAGGGAACAAGATAAACAAAGGACAGCATGG
GACGAATTTGCATCTGAAGATAACTGAACTTTTCATTGCCATTTCATTTCAGCATCACGA
CATCAGGAAAGATCACCAGACAGCAGGCATCATATCAGCGCTACAGAGACACCCAGCACG
TTTCCTTACTACAACCAGATCGCAAGACACGAACTGCTACAGCGGCGACCGAAAACCTAG
GCGCGCTCCCCTCGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGC
TTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGGCCGACGAGGTAGGCCTCGGCG
GCCTC