morexGenes - Barley RNA-seq Database

Contig contig_2549606
Source Contig contig_2549606
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2549606 (10063 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_2549606

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38047	3	2521 bp	None	Available	Available	None
MLOC_38048	1	797 bp	MLOC_38048.1	Available	Available	LOC_Os01g53280.2, FRAME:-2, EVALUE:1e-78, 13101.m05581 protein 50S ribosomal protein L20, putative, expressed
CDS Structure of MLOC_38047

CDS Structure of MLOC_38048

Contig Sequence (10063 bp)

>contig_2549606 10063 assembly3_WGSMorex_rbca.fasta
CGTGGGCGGCGCGGTGGGGGGGCCGGGGGGGGGGGGCGCGGCGCCCCCGCCGTCCGATCC
GGACGAGCTGCGCCGCCGTGAGGCCAAGGAGATGATAAGGGAGCGGATGCTGCGGGAGGA
CGCGGAGGCGGCCAAGGCCATGGCGCTCGAGGCCGAGGTCCGCCGTGAGGTCATGGAGGA
GCGCGCCAGTTTGCTCGCGGGGCTGGCCGGCGGGTCGGAAACGCTCAAGACGGCGCCGAT
CTGTCACGAGGTTCGCTGCTCGGATCAGGATTCAACCTTTTGAATCTGGATAATTTCGCC
ACACGCTCTAGGCCTCCGGCTCCTTCCTTTTTACCCCCTGGCTATTCCAATATATGTGTG
TTTTTCTTCAGTCGTCTGTGCAGGCCGGATCGAAACTAGACGCATCTGCGGCCGTGCCAG
CCAAGCGGAAAAACCCTGATGCTGTTGTTGCATCCGCTGTTTTTGCGGCCACAAGCAGCA
AGAAGCAGAAGCCCGACCTGACATGCACGGTGTGCAACATGACGGCAACCAGTGCTCTTG
CCCTGCAAGAGCACCTCAGAGGGAAGAGCCACCTGAAGAAGGCCGCTAAACACCTGCAAC
CATTACCTGGAACAGGCCACCCAGAGGAGGATGCGGTAATACAACATATATACACATTTG
AGTTTTATCTACTCCCTCTGTTCCAAAACAAGTATCGTTGATCTAGTATAAGATTTGTAC
TAATTTAGTACTAAAACTGCGACGCTTATATTGGGACGAAGGAGTACAACATATATACAC
ATCTCAGTTTTATCTACTCTCAATTCTGTACTGAAGTTACAAAATGCAAAACATATGTTT
CACTGCGAATTTGCGATGTCCATATCTAATTGGGGAACTAATTAACTTGGAATCTACGTT
CTTTGGGTGCAACAAATTAGATAGAACGATCAAAATTGTATTTGAAAACGAGAATTGAGA
CCTACTTTTTGAATTGTTAAGCGTTATATATAGATGATGTTAAAAGCATCGTAGTATCTT
GCTATTACATAAGTTATATGGATCTCCGAATCAAACTGACCTGAATTGTGTTTTGACTTG
TACTAGCCTTGCATCTTTTATTCAAGTATATATGAGTTCGTCTTTGTTTTGAATACATGA
ACACGTATGCTGTCTGGGCTCGAGTCCATAGCCCAGGCTACTACAATTCTTTTTTGCTGA
CACCATGCCCTACTGATAATGTCGTTATATTCAGTATTCACTAGTATTTTTGAATTATCT
ACATTTAACAGCCCAGCTAGCTAGAGTGGCTTGGTTAGGTGTGACTTGTAACACCAGTAA
ATCACACATTTTGAGGATCATAAATAGGTCTCAACTGCTTCTGGATTTTTAGCTCCTGGG
TGTCCACTGGGATCTGGCACATCTGTCGAACAATGAACATACATAGCTTCTCTGCATGTG
AGCACAGCTTTTGATTCTTAACAACAGTGGGATGCCTGGCACACCTGTCGAACAATGAAC
AGTGAAGCTATGACCTACTCGCGTACATAAAGACAAGGCTATTAGCTCGTCAAATCGCCT
GATAAAGCACATATTGCCGCTGCAAACACCCTGCAGCTTGACAGACAACCAACCGCACGA
ATCTCAGGACACGCAGATAAAGGGGCGTCCGGACCCCCCCGGTGCTACCACACCTTTTCG
AAAAATTATATATCTGGAGAGATATGTATATATATATCTTGTTACCAAATACCAATAACT
TTGTACTAACCTTCTACAAGTTTTCTTTCCTTTCAATAGTAGAAATAGATCCATTGATGG
TGTATATATGTTGTTGATAGTTTTTGTCATTTGCGAGAGATAAGATTACTTGTGTCAAAG
AATTGACCAGAGTTTGTGTTTGATGCAGTTCAGCTTGAAGGTAGATGGGTCGGCAGCCTT
ACCGGCCAAGGGGAAAAACCCTGGTGGCGGTGTCACATCGATGGCTTTCGTTGAAAAAAG
TTGTGACAACTTGAGTTTGAACTGCACGGTCTGCGGCATCACAGCAACCTGCCAGAAGAA
CATGCAAGATCACCTCAAAGGAAAAATTCATATGAGGAAGACTGCATTGCATAAGCCGGA
TGGGGTAAGGAATATGGTTTGGACTTTGCCAACCCTACCCAAGTTCAACAAAACAATTTA
TGTGTTTTACTGCAGCGTGGTTAACTATAATATTCATAATTTCCTATGAGGCTAGTTGAA
TCAGTTGTTCTTTCCAACTCATTTATTGACCACAATACTGCCTCCTTACAAATATGTAAC
ACCCCCTCAAATTTTGAGCCTAACTTTGACTACAAATTTGACTACTCCCTTCGTTCCTAA
ATACAAATCTTTTTAGAGATTTTAGTATGGACTACATATGAATGTATATAGNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTTGCTTCGTATGTAGTTTATAATAGAATCTCTAAAAAGAC
TTATGTTTAGGAACTGAGGGAGTAACAAAATATGAGTTGTATGCCACAAAAAATATATCA
CTGTTTTATTAGCTGAAAGCAGTTTTTGAACGCTATTGTTTTTGTGGCATATAACTGACA
GTTTTTAGTCAAATTTATTGTTAAAGTTAGGCTCAAAGTTGGAGAGGGTCTTATATGCTT
GAAAGTAGGTATTATTCTGATCCTATAAGTGTAAAGTGCTCGTTCTTTTGCAAACCCAGT
AATAATACATGGCCAAAGTGTATCATGATTTCTGGAACATAAAGAGGTATCAAAGGCTAT
TAAACCATGATTGCTGATAAACAAATTTTACATGTCCTTACAAATGAATTTGGTGCTAGT
TTCTAGTCTAGTACGGAGTAAAATGTTTGCATTCTTCCATTATCTTTGAACATTAAGAGG
TGCGAGAAGCACGGGAGCTTGCGAGAAGGGATTTTCTAAACCTAGGAACATATGAACCCT
ATAGCCTTCTATGGCTAAAAAAGTATGGCATAGATTTGATAAAATACGAAATAAATCATA
CTAATAGAGGATGTATACAAGTATATGCGTCTAAAATTTATAAAACATAAATATGACCTG
TAACTTACACCGTTCTTGTTCATTTTATCATTTTTCTATATACATCTCATACAGTCATAT
TTAAGTTTTAAAGTTTACACGCCCATACTTGTACGCATCCCTAATTGCATGATTTGAGTC
ATATTTTGCTGAAACTTATACACATATTTTTAGGGCGTATAATGTTGAGATGTACTCCCT
CCATTACATAATTCTAGTTGTGGTTTTAGTTCAAAAACATAGATTCGTTGTCAATGCCAC
TTCAAAAACTTGGTATTTCAGGAAATTCCACTATAAATATTGCAGCCAGGGATGTGCCAC
TAGTGTCTTTCTAAGTTTTGTGCAGTGCCATCTCAGTCCCTTTCCTGTCAATCTCTCTTT
CCCTGACCATGTGATGTTTCGGTTTCGCACTGTCCCTTCGAATGGTTCGAATCGATCAAC
CTTGGTACGTTTTACCCGCCATTATATTTTCACATCTTGTCATTTTTCAAGACGTGATCG
GGAAAAACCAGCCAAGGTTGATTGATTAGAACGGTTTGAAAAGAGAGAGCAAAACATGAA
GCATCACATGGTCAGAGAAGGAGAGAGTGACAGAAAAGGGACTGAGATGGCACTAGCACA
AAGCTATGCAAAACATTAGGGGCATATGTCTGAAACTTTGAATACATCATTTTTGTTTCG
AAATGGGATTTTGCCTCTGCTCTTCAGGTCTCCGTAACCTAAGCGAATGTTCGCTTAGTC
GGGTTTGTGTTTTTTCACGCAGGTCTGCTCGAAACCAAATGCATCAGGAGCCTTGCTACC
AGCCAAGCGGAAGAGCTCCGATGTTGTCCCTGCCGCATCCACTCTTTCAGCAGAGCCAAG
CAGCAAGAATCAGAAGCAAGACTTGACCTGCACCGTGAATCAAATGAAGATGGTGCCCTC
GCCTGCGCCCGGAGAAGCGGAGGAAGAGGCAGAGGTGGAAGGCGGCTACACGCCGATGAA
GTTCAAGATGGTGACCAACTCCGGGATATCGTGCGAGGTGGTGCAGCTGAACGGGTCCGT
CTTCTGCGAGGTGTGCAAGGTGAAGACCCCCGACCGTGTCACCATGATGTGCCACCTCGA
GGGAAGCAAGCACATCTCCAAGCAGGCCAAGCAGAAGCAGTGCGAGGCCGTGGAACCACC
GGCGGCCGTCGCTGCTGGTGGCTATGGGCCAGGATCAGAAGTGGTGCCCATGGAGACGAA
TGGCGTTGACGGCAGCAGCCTGCTGTGCGAGCTCTGCAACGTGAAGGTGCCGTCGGAGAG
AGTCATGCAGTCTCACCTGTCCGGCAGGAAGCACACCAACAAGGCGAAGGCGGCCGCGGT
TGGCGTCGGTGCATATGGCAACGGGTCAGGATCAGAAACTGTGTCCATGGAGGCCAATGG
CGTGCGCCGGCTGGACGACGGCTTCCTGCTGTGTGAGCTCTGCAACGTGAAGGCCCCGTC
CGAGTGTGTCATGCGGGATCACCTGTCTGGCAGGAAGCACACCAACAAACAGAAGGCCAC
CGCTGACGCTGGTGCAGGACAGGAGGTGAAGAAGGCTGCTGCTGCCGCCACCAGCTCATC
CAAGGAAGCCGCCTCCATCGTCAACTCATCCAAGGGAGCCACCTCCATCGACGTCAACGG
CAGCGATGACAACGTTAAGAAACCAGCAGCGGGGGAGATGGAGGTAGTTGTGTCATCGGC
AAAGCCTCGAGTGGATGGTGCCGCCCGTGTCTCCTCCGTGGCGCCCATGGAAGTAAATGA
ACAAGCAGAGGCCGGAGACGGCACTGCCAAAGCTGATGAACAAGAGAAGGCTGATTCCGA
GGAAGAGGGAGCCGTCGAGATGGACGGAGGCGCGGCGGTGACAATCGGCAGCTCATCTAA
GGAAGCCGCCTCCATCGTCGTCAACGGCAGCGATGACTCCGTGAAGAAACCAGCAACGGG
AGAGACGGAGGTAGTTGCGTCATCGGCAACGCCTCAAGTGGATGTCACCGCCCCGGTCTG
CGCCCCTGACGCCGGAGACGGCACTGCCAAAGCTGATGAACAAGAGAAAGCCGATGCCGA
GGAAGAGGAAGCCGTGGAGATGGACGGAGGCGCGGCCGTGACCGGCGAGGAGTATATCAT
CCAGGTGCAGGGCAAGCTGTTTGTCACGCTGCGCCAGGCGGACGGCAGCCTCTCGTGCGG
GCTGTGCGGCGTGCACGGCTGCGACAAGGGCGGCATGATGGATCACCTCTACACCAGGGA
CCACTGGCGCAGAGCCCGTCTCGCCGAGGAGAAGAAGCCTGGATGCCCGCCTCTTTGTGG
TACTGTGCCAGAGGAGGAGCCGGCATCGAATGAGGTGAAGAAAGACGGCGACGGCGTCCC
AGTCACCGGCGGCGAGGCTCATGTCGACAACTGATATCAGCCGCGCGTGACTATGCATGG
AATGGCGGTCTGTGCTGAACTTTGTAGTAATTTAGATACATGATGATGTGTGTGTGGACC
GTACGATTGTTCGAGTCCTTGTGTGGGTGTGCCAGAGAACTTAAAACTACCTGAGCATTT
CCTGCCAGTACAACTTGTTTTATACTTCATTCAGTACAATTTCCTTCCAACTATTTTCTG
CCAGTATCTTTTGTAGTAGTATTTACTAACTTGTTATCAAATCAGACATGCTAGCAACCG
ATGTCTGGAGAAGATCACTCCCAGCCTTACCCATTTACTCATATCTACATATAACATGAT
AACAGCAGTTTGAACTCAAGAATCATAGCTTCTGGCTGCTGAAAGATCCCCAGGAGAAGC
AGTTCAAAGCAGCAGGGTTACAAATCCACAGGCAGTGGGTATTCAAGGATGACATGACTT
AATGACTTCAGATAAAAACAAGGAATATTTTCTTCCCAAAATGACCAGATCTTTCTTTAT
TGACGGTAAACAGAGCGCATTATCCAGAAAAAGAAGCGCACCAAGTACAGTACATGCACC
CTCTGTTCAACAGGCCAACAGACCGAATAACATGGACTAAACCGTGATGTGATACATACC
CACATCACATGAGCTCATCACAAGGCTTTGGTAGGTTTCAACCAGCAAACTGAATTGTCA
AGGGAGGGATTGTCTATAGAATGCTTGCTAGTCCTTCCTTCTTGGCAGCCGGCCTGTTCC
CAGGGAACGCAGTGCGGGATACATCAACGAGGGCCTTGAAGCTGTACGGTTCATGCATCG
ACAGCTCCGAGAGTACCTTCCTGTTGAGTTGGACATTCTCCTTCATCAGTCCATGCATGA
AGTTGCCATAGTTCACCTGGACAGTCGATTCAGAATATATATCAAACACATGTGCAGAAC
TAGAAACCCGACAACTTGTACTTTGTTATCCTAATATATTATGCTTGGTTTCTTCAGGAA
AAAAAATCAGAATGCAACAAACTCATTTCCTTGTCAAACCTCGTGTGTAAATAGATACAT
ACCCCATGGAGTCGTGTACCAGCATTGATGCGCTCGATCCAGAGAGATCGCATGTCCCTT
TTCTTGTTGCGCCGATCCCTGTAAGAATATTGCAATGCTTTTTCTACACGCTCCCTGGCA
ATTCTTATGCAGTTTTTAGCCCTTCCTCGGAATCCCTTGGCTAACTTAAAAATCTTCCCC
TTGTTCATCTTTGAGCTCTTGGTTTAGACAGTACTTCCACCCTATATTCACAACATCAAA
GTAAGAAAATGGAGCAAATTATGAATTACTATGATGAGATAGAAGTTCAGAGTACACGCA
AATGTTTCAGACATTTATTCCCCGAGAAGGGAATGCGTATGAATAAAACATACTTAAGGA
CAGTTATTTTCAGCCTAGACTTCTCCAGGAACAAAGTTTAAGCTTCTCTACCCACAGGAG
CTGCAGCACAGAGAAGCCCTGAGAAATCGTGTTGTCGGTTCTTCTGTCCCTTAGCTTATT
TTCTGATGAAAAGTCCACAGGCTGTAATTGTGCGATTTTTAACTTATATTGTGCAATTTC
TTACTTTGTTTATCATAGATGTTATGAGCATCATAAAATAAATATTATAACAAAAATAAG
ATGTCATTCGTACTTGAGAACAAGTCAAATAGAAAGAGGTTGTGAAGTTACAAGGTTTTT
TTTTTCCAAGAAAAGCAGTCACAATAAAAACTAATCATCAAGGTACGACAATAGAGTGAC
GAACTGTCAACTGTGCCCGCGGTCCTTTTAGAGTGACTCCACCTATTGTTGAATCACTTA
CACTCATAATTTCACTTTGTGCGCTCACTGAACTTGCTTATCAAATTTAACATACCCAAG
TAAGTTGAAACATCTGGTGGGACGGTTATTTACATGAACTTGTCCGATACAGTATCAGGA
AAAACAATATGGGTCATAGGATCCAAAGTTACTTTCCCCGATTTCCCATTCTCATCTATT
ATGTGACAAAATAAATGTTGAAAGTGGATATTGTTTTGGGGTCAACAGAAAGTGTTCTCT
GTTTTTGGAACATATAACCAACGACAGTAATTGTCGCGATAAAAAAAATGCTTACAAACA
AATATATGTGCTCATTTGTTTAGTGTCTGCTGTATTCCAACCGGCAGTTTCCACTTAGAA
TTATACGCCAGATTAAAAACTACGTGGAAAACTATGGCAAACGCAAGCAGCAGCAGGTGT
TGCAAATGCATGGTCCGCTTGCGAATTCGAATCCTGCCATCAACAAAGAACCATTCCCAA
CCAACCCCGCACTAGGCAAGGGGCGTCAAGGGATTCGGACGGTCAAGCACGCGGATTCAG
TAGCAGGAGCCGGCCTCGCCGCGCGCGGTGGAATCAATCACACACACCTCGCACGCGCGA
GCGGGAGATTGTACATGTGTGTGCAAGCACATACGTACCTAGAATCAGGGAAGAAGAGCT
GGTGCGGAGACGGGTCGCGGCGGAGCGGCTCGGGGAAGAGGGAGGCGACGGAGACCGGCG
GCGGGCGGCGGAGTGGGAGCTCGGGCGCGTGAGAGGAGAAACCTAGAGCTGCGTTTTCTG
TGGATCGGCGAGCACGGGTGTGGGCCGAATCGTTTTCTTGGGTGCCAATCCTACAAGACG
TCAATACCACCCACGCGGCTCAACAGGGCCGGCCCGTTTAGCCGCCACGCTTGTACATCA
CTCGCCTGACAGTACATTCAAGGGAACGGGAGTCCCTAGTCAGCGCCTTCCGCACCCATC
AGGAGAAGGGGCGCTCACTACAGCTCGAAATGGGCCGGCCCACGACGGGGAACTGCAGAA
AATGCGCGAAAATTTTTTTGTTCGCGCAGAGAATCGACCTAGCGACCTGCACTACGTTAA
ATGTTTTCGGTAACCAATAGGCATGCCGCCACATATGAATTAATGCATCGTTAAATTTCT
ATTAACTATCTTCACCGCTCATACATGATTTTCATTAAAAAAAGAAACTTCTCAGATTTC
GTAAAAAAAAAGTTCCAATAAACATGCAAAAAAAAACTTACCCTATTCAAGAAAAGTTCT
TTGGTTTTGAAAAACAAAATTAGAAAAAAAAGTTCTCAAAAAAAAATTAAATCATCAAAA
TATTTGAAAAAAAGTTCATCAACTATTTAAAAAGTTCACAGATCTAGAAAAAGTTCATCA
ATTTTGGTAAAAGTTCACAGATCTGCAGAAAGTTCACATAATTTTAGAAAGAAGTTCATC
GAATTTGATTTTTTCATAAACATTGAAAAGAGTTCACCAGATTTGAAAAACAAATTAATC
AAATTTGATTTTTTCACAAACGTTGAGCAAAGTTCATTAATTTTTAAAAAAGTTCACGGA
ACTGGAAAAAGTTCACCTAATATTAGAAAGAAGTTCATCCGATTTGAAAAAATTCATCGA
ATTTGATTTTTTTCATACACTTTGAAAAGAGTTCACGAGATTTAAAAAAAGTTAATCAAA
TTTGATTTTTTCATAAACATTGAGAAAAGTTCATCAATTTTGAAAAAAGTTCATCAAATT
GAAAAAGTCCATCGAGTTTGAGAAACATATAATTAAATTTTAAAAATAGATCACCATTTC
ATAAAAAGAGTACAAATATTTTGCAAACAAAATTTAATCAAATTAAAAAAATCCTCTATT
TCAAAAATGTTCATGCCATTTAGGATAGTAAAAAAGTGATGAGGAAAGAAACGAGTAAGA
ACGAAAACAGTAACACGCAGAAAACGAAAAAAGAGAAGAAAAAAGTAAAAGTAAAAAAGG
AAAAAGGAGACGGAAGTCATAAAAAAATTTGAAAGTTAATTTTGAGTAGAAACTTCTCCT
TGGTGTGGTGGTTAGACGAAGGAAACTCGACTAACCAGGTTGTTGGTTCGAATCCCTGCG
AATGTTTATTTGTTTTTTTACCTATTAATAAAGCAAATATCGAATCCCTGCGAATGTTTA
TTTGTTTTTTTACCAATTAATAAAGCAAATATAGCTTCTGTCGCCCGTTATAAAAAATAC
CCCTAAAGTTTACGTGAATTACCCCTTTTGCCACCGGTAAGGGAAAACACTGATTGGTTT
TTTCAACTCTGATTCAGCTCTTTTATTTAATTCAAGATACGCGGTCCCGCTATTTCATCA
GAAGTATATGATTAGCTCAACTGGTTCGGCGCTCTAGGTTCCACCCGAGAAACCACGGTT
TGAACCCTCTTTCTCCCACCTTTTCTCATTCGGTACCGCATGGCTGCCCGATTGGGATGG
CCTAGCCAGCCTTCAGCACTTTTTTTTTCTTCTTTTTTCAGTTCTTCTATGTGTTTTTTA
TTTTTTCTCTTTTGGCATAAACTTTGCAAAAATTTTAATCTTGGATTAACGAAATGTCAA
ACTTATAAACAAAAAAGTTTTCATATATACAAAATAATGTACAGTGCGTAGAGATCATAA
ATAATATACTTCTCTTTTATTTTGAAAATATTGATCATGTATTTAAGAAACTTTAAATGT
GCATAGAAAATGTTTTCGATGTATAAGAAAAACATATACAAAAATAAACAATTGTATGGA
ACAAAGTAGACATAAAAATATATAACTTTTCGAAAATGTTAAT