Contig Data
morexGenes
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Map Locations of contig_2549596 (6376 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_2549596

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_38041 1 477 bp MLOC_38041.1 Available Available None
MLOC_38040 1 1328 bp MLOC_38040.1 Available Available None
MLOC_38039 1 774 bp AK372454 Available Available None





CDS Structure of MLOC_38041






CDS Structure of MLOC_38040






CDS Structure of MLOC_38039






Contig Sequence (6376 bp)

>contig_2549596 6376 assembly3_WGSMorex_rbca.fasta
TGGTACGCACCACGGCGGCGGCGGCGGGATGGCGCCCCCGGCGACCAGGCAGCCGACGTA
CAGGGTCTTCTGCAAGGCCGGGGAGGAGAGCTTCAGCCTCGCCGCCAGGGACGGCAAGGT
CTGCCTCGTCCGCACCGATCGCGACGACGACACGCAGGTACATACACACGCACGCGTACG
CCAGCCCAAGATCGATCCAACATGCTTCCATGATCCCGATCCGAAATAGCATGGCGAGCT
TGCCACCGGGATCTGAAAAATTGGCGGTTCCGCCTCGTCCTTTCCTAATTGGGGAACCCT
GCTTGGCTTTTGCTCAAGCAGCTTTTTGTTTATTATTTCCTCTCTGATCATGTGGTCGAT
GGATTTGATTGAATATACGCATCTGATGCAGCACTGGATCAAGGACATGAAGTACAGCAC
AAGGGTCAAGGATGAGGAAGGCTACCCTGCCATGGCGCTCGTCAACAAGGCCAGCGGAGA
GGCTCTCAAGCACTCCCTCGGCCAGTCCCACCCTGTAACCAGCCTCCTTGCTTCAGCTCA
TTCATCCATTCATTCATCTTTAATTTTGCTATCCGATGCATGCGTGCACGGTGGATCTTA
GTACATGGTTTTGGCAAATTTAGACATATCTCTATATCAGAGCATCTGCAAGCACACCAT
ATACCACACATTCCAAATGCCCACTTTCTCTGCATTCTTCTGCGTATGAAAAACAGAATT
GGCAAAGCTTGAGTGAACAAAAGCACTTTGAGCTTATTGGCGGTGTGACATGTGGTATTC
TCAGTGAATAATCACTACTAGGATTTAATGATTTTTTGTCTGGAATGATATAAACTAGTC
CAGCATGAGTTATAATTCTCCCTGTTCTTCGGAATAATATTTGCCTAGTACTAGGTGTCA
TGTTCAGCAAACGTTTCGAATTTTGTCAGTGTCAAAAACTTGAACCTGCAACGGTGTTTC
ACATTACCATCCACGCAAGACCATAACTATAACAATACTTCCACGCGTGTCATTTTCAGC
AAATTTTGTAAGAAAAAAAAAAAGTCAAGTGTGCCTGCTGTGACTGTGATCTGTTATGGC
CTTCCAGATTAGTCAACCCTGCAGTGCAGCTCCTCTAGTATGGTGAATTTGCTCACCTTC
TGGTTTGTTTCTTGGATCCTAGGTTCTTCTGACCAGGTACAATCCAGACACCCTGGACGA
GTCGGTCCTTTGGACCGAGAGCAGGGATGTTGGGGCAGGCTACCGCTGCATCAGGATGGT
GAACAACATCTACTTGAACTTTGATGCGCTCCATGGCGACAAGGACCATGGCGGTGTGCG
CGATGGAACCACCCTCATTCTGTGGGAGTGGACTGAGGGCGACAACCAGCGCTGGAAGAT
CGTTGCCTGGTGTAAGTTCTTCTATTCTATCTCCTGCGCTTGCCCGTGTATTCCCTCTGT
AAACTAATATAAGACGTCATAGGGAGTATTAATTTCCTGTTGCTCCAGTTCAGTTTCACT
AGAACAGTTCGATTAGTTAACTGACATTTGTTTATTTCATCTCATGCAAATAGACGTACC
CGCTCAAACACAAAGTAGAATAGTAGATGCAAGGTATTTCTGTTACAATTTGAGGATTGA
TTTGTGTCTTGTACTGATGGCAGGAACGATGCATGTGCTGAAGTTTGTTGGTTCAAACAG
CGCGCGGTCTTAATAATAAGCAAGTACTGAATGTTTCTGGAATAAAAAGGATGGCGTCGA
TGTGAGCGGTGTTTCTGTTTTGTTTGAGGAGTTATATATACATATATATGTTAATGAACT
TGTAATGGTGGATTTATTGGCCTAGATTATGTGTGATGGATGCATGAGCAAACCAGTGCT
TGTTATTATGCATATATATATACATGCCATGTGACATGTTTGTGAACTATAATAGAATTG
GTTTATCTCATCATATTGCTGTAACGGAGATCTATCTATATAACTTAGTTTTTGGTGGAT
ATTCAATTCGGCTCGTACGAGCCCATTACTAAGAGAAAGCTTACTAGGAGTGCTGGTTAT
TGGGCTAGCAGTAGCGTGGGCACCAGCGTTATTCTATAACTAATTTTGAATAGCAGTGTC
GGTTTGCCCGCTACTGCGTAGGTTGAACCAGCGGTACTATTCCCTCCGTTTCTTTTTAAT
CCGTAGGGAGTACTACCTAATTTTGAATTAAAAATCAATCCATGGCTGGTGCTGCAGGGC
ATCCTCGTTCTCTCCATCCATAAATGATTGATGTTGATCCTAGAGGGGATGCAGCCATCA
ATGGCGATGGTGCTTCCATGCCTCACTCGTCCACGTACATCTCTCCTCTGCTGTTGCTAC
AAAAAAAAAAAAGGATTAGAAAAGGAAGAAAGATACTGAGAGGAGTAAGAGGAGCAAGTA
CCGGATGGCCGTCGGATTTGGACCAGACACCCAGTCCTGGCGAGGAGGTGCAAGTGGTTG
CATCCATATCCATGACACTCAGTCCTGGCGAGGAGGTGCAAGTGGTTGCATCCATAACGG
ATCTTGCCGCCAAGATGGATGGTGCTCCCTGGAGGAGGGAGAAGGGAGGGCGGAAGGATG
GAGATATACCTCGGTGGATGTGAGGGCGAGGGTGGGCAACGACCCTCGACGAGGGGCAAC
GGCGACAGAGGCGGGCGATGCTGTTGGGCGACGACACCAAGAGCGAGCGAGAGACTGTGA
GGGAAGAGTGAGCGAGAGAGAGAGGGAACGGGCGGGGAGGGAGTATGTGTAGATATTTTG
GCTGGGAAAGACAACTTAATAATAACTAGGGATATAAACCCGTTCTACTACTATCAACTT
AGTAGTAGCGCGGGTATATATAAACCCGTTCTACTACTATCAACTTAGTAGTAGCGCGGG
TTTATACCCCTTGCTACTACTATGGCCTGTCCCCGGGGGCATGGTATATACCACTTTGTA
GTAGCGAGGGGTATAAACCTGCGCTACTATTATTAATTTAGTAGTAGCGAGTGTCAATAT
AGCGCGTTACTAGTAACTTAGCAGTAGCGAGGGGTATAAACCCGTTTTATTAGTAAGCGA
CTACCTATAAGTTTTTTCCTAGTACTAAGCCTATGCTCAACAAATTCAACTGTCATTTTT
CCCTGACGAAGCACAATTGTCCCTTTTTTTGCATGGAAATGGGCAAGAGCACATCAAACA
CTAATATGAACATGTAAAAAATTATATTTTTCAAAAAAAAAAAAAACAATGGTTGCCCAT
TTGTTTGAATTTGTTGGTCGTGCCAGTACTATCACCATCCAGTTTTTGTTGAGATCTTTG
AGGTGCAGACACTTTGATCTTGTTTGGGATCAGGAACTCTTTTCTGGTAAAAGGGATGTA
TTGAAAGTCCCTCCAAAACAAAAAAGAACTGTACTCAAGGTCGGCTGCTATGTCGCTTCC
CATGTGGTTGATATGATTCCATCCAGTTGCTGCTTTATTTCATTCCATTTTCTACTCATT
CCAGCTTTAGCAATTATTGTTGGTACCATTGCCCTGTCCACTAGAGAGTGTCGGGCTCGC
CCTGGCCCTGGTAGTTGCCTGTTGCCATCTGCTAAATAAATCACAGTAAATTTGATGTGA
GATGCCATATGCTACACGAATTATGCCGATGACTGATCCAATAGGAGCCCCCTTTCAATT
TTTCTCTATATTATGTCGGACTCTTAGGGCTCGTTCGTTAATCCACTAATTCCTCCAAAT
TTAAGAATCTACGGAGCATGTGTACATCCGCTTCTTAAATTATAAGTACAACTTCGTCCG
TTTTGAAAATGGAGCCGCGGAGCCGAAGGACTTCGAACGGTCCTTAATTGTCTACATCAT
CATAGCAATAGAGTTTCGCAAAAAGAAACAAACAAACATAGCAATAGGTTTATGATGGGA
TACTTTTCGTTGCAATTATCCACACATACCAATGTTGCTTTTGTAACTTTTTTTCTTTGT
GGGGAATTACTTTTACAACTCTAATCACATGCTTATGCATAAGATTATGAAAAACGTTTG
AAACTATCCAAATGATTTTTCACCTACGTAACCTCCTCTCCCGCGCGACATGTGGCATGC
TGGGCCCTTCCACCACTTCCCAACCTTATCTCCTTCCTCCGCTTGCATTTTCTTCCTCTG
GCTTTCCCTTAGCTCATCTCTCTCCTCATCCCTACACACTCAACGAGTGCAGGCCATGGC
ATGAGTCATCACACAGTGATCCCCTCGCACGCTTGCTGCATCATAGTAATTTTCGTTGCG
GCTATGTTGCATCGCAGCATCTACTGTCGCCGTTCCCGCGTGCTTCACCATGCCAAAATT
CCCTCGCATTCACACGCATGCTGCGTCACAGCAATTTGTCGCCTCTGTGCTACGTCGCAG
CGTCTGCCGCCATCATTGCCACTTGCTTCATTACTATGCGACCCCCTCACGTCTCACATA
TGTTGGTCGTAGCAATTCGTCGACATCGTGCTGCATCACAGAATTCGGCACCACCGCGTC
GGTGGCCGCGCTATAGTGAAGCTCCGCTGGCAGCCCGGGTGCTGCGATGAAGCTTCGACG
GGGCAGCCAGCGCCGCGCGGTGGTGGTGCTGCAGTGAAGCTTTGCCCGCAGCCCGAGTGC
TGCGATGTAGCTTCGACGGGGCGGCAATCACCTTGCGGTGATGGTGTTGCAGTGAAGCTT
CATCCCGGAGGCTATCGGGGTGCTGCGATGGAACCCGTCGCGCGGGTGCGATGCTGCAGT
GAAACGTTGCCGACTGTTGTCATGTGCTAAAGCATCGCCGACAGCATTGGGTGTTAGAGC
GCTACCCGCGCCGATGTTGGCGGTGCAGTGAAGCGTCGCCGACGGTGGAGAATGGCTGCG
CTGCGGCGAGGTGGTGCGGCTCCTACTGCAAGTCAGGGCGGCGCTGCTTCGAATGGCAGT
GCTCTTCGGTTGCTTCTGTTGCGGTTGCGATCAGAGGAGGGGACCACCCCAGGAGATTGT
GTTGACTACATCCAATGAGTGACAAACACACGATCCGATGCTCCGTGACCCGATCGATTT
CTCTGGGAAATCAGTCGAATGATCCATAGTAGGCGCCTAAGATTATCCTGTCTTAATCAC
TCTTACATGTGTCGAGGTCAGAGGCCTCAATTACGGGAGCCATAACTGTGTTATTAGTGG
CCTGCAAGGCGCCGTCCGCTGCGATAGACTAACTGCACAAAGCCCGCTTCAAGCATGGCC
GACTCCTCCGCGTTGGACTGTGCATACACGAAGCCAGCCACGCTCGACGGCGGTTATGGG
ACACGCGCCACTTTGTAGCCCGCATTCTTGGTGTGCTCTATCGCGTTAAGTAGCATCATA
TCCTCCTCCTAGACACATTCTGGTACGGGGAACGACCCTAGAGGCGATAACACGAGCGGG
GGCACGAGGACGGACGGTGGTACCACGAGGATGATAGACTCATCGAAGGCGGATCCCAGT
TGTAAGACCTCATGGGAGAGATCATAGATACCATCGGTAGTAGGTGACGACTGAAGTGCA
ATATCAAGGTGGAGCCGGCAACAGCGTTGATCTGCCCCTGACTATCGGTCCATAAAGGGA
CGAGGGGAAGGTCCTTCCCAGTCGACTCCCTATGGCAGGCACTGCGGGCGGCAAGTCGCT
GGAGAATACAGACCCTCCGCTCGCCGGCGACGGAGCTAGTCCGAGCGCATTTGAGAGATG
CGACGTGCAAGCTGCATCTTCCGACAACCTTCCACAGCGGGATATGAGTCTACAAGGTGC
GTTTGCGAAGCTCGGATTTGTTTTTTTTTTGGTTGGGGTAGAGAGCAACAATGAGTGAGA
TTGAGCGGGAGAGGGGAAGGTTGACTATTATATTGTGTGAGATGGGGAAGGGGATTTCAG
ACAAGGAGGACCCACACATCAGCGAGAGAAATCGCAAAGGAAGGGGACACTACCGGCGTG
ATAACCAAGGCCCGCGGCAACACTACAACACTAGCGATGTCGGTTACAAAGTCAGCGCCA
TTATGGTGCACCTATCTACTACCCCTATAAAAGGACGAGGGGGTGATAACCCATAAGTAT
AGGGNNNNNNNNNNNNNNNNNNNGATAAATAAGAGTGTCGAACCTAACAAAGAGCAAAAG
GAAATTATAAGCAATTTTAGCAAGGTGTTCTCTGCAAGTGCTGTAAGTAAGAGTAATAGA
TAGTTTTGTAGCAGGATAATGCGTAACAAGTGACAAGTAACAATATTAGCAAGTATGCAA
CAAGATAGCACAATATTTTTTATAGCAAAGGACATGCCTGANNNNNNNNNNNNNNNNNNN
NNNNNNNNCCGAGGACACATGAGAATTTCTATCTAGTCATGTTCATCATGTTTGAGTTGA
TTCACGTTCGTTACTT