morexGenes - Barley RNA-seq Database

Contig contig_2549551

Source Contig contig_2549551

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2549551 (1466 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_2549551

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_38014	1	947 bp	MLOC_38014.1	Available	Available	LOC_Os08g15870.1, FRAME:+3, EVALUE:4e-14, 13108.m01696 protein retrotransposon protein, putative, Ty1-copia subclass

CDS Structure of MLOC_38014

Contig Sequence (1466 bp)

>contig_2549551 1466 assembly3_WGSMorex_rbca.fasta
ATGCATGGTAATTTGGCGCTGGCTAGAGACTAATCGATCGGTGATCTTCTTGAAACTTGG
CAGTGGATCTTCTGGGTGGGTCCGTTCATCGGCGCGGCGCTGGCGGCCATATACCACGTG
GTGGTGATCAGGGCAATCCCCTTCAAGAGCCGCGACTAGTCGACAAATCAATCTGCCGAC
TGTGGATGGAGTCTTCTTATTTTTGTTGTATTTTCTCCTTGCTCTTGAAATGTATGTTTC
ATCATATAGCTTATTTTCTAGTTTTGAATGCTTTCCGGTCACGGTTTTTGGTGCAAATTT
GTAAAGCACGGTAAAAATGATGTAAAATGTGTTTGGGTTATAAAGGGCTATGTGCCCATA
TAAGGAATAATTCCTGGAAAATCTTCAAGGTGTATGTGGGGTTTTACAACATATTGAGAA
ATTTAGTACCAACCTGCTTTGAAGAAGAGTTGAGCCCAAAATATAAGATTAACTCTAGCA
GAGTTGTCATACTCGTAGTCGCTATATTGCATTTGGAGAGTTGAGAAAAATTGCTAATGT
ACCCAACAATCCAAAAACCTTGTATTCATAAGAAATTTTGATTCAAAGCTTTGCTGCTAC
AACGAAACCAAAGCCATCTTCTGTCTCATGACGATGAATGCGTCTGGGTCACTGGTGGCA
CTCCCGACAGAACGGCCAGGCAGAGGGCATTCAGGAATACAACCACCATCTTTGTGGAAG
CCGTTCTAAGTGTGATTGAAGACAAACTAGTTGACACATACCTACATGTGCGGCTTGATA
AGGACTTATGGGTGTGCGCTCTAAGCTAAATTTGGCGCAACCGGTGATAGTAGCGAGTTG
TATGTCATGAATCAGTTCTATGACTATTTTGTTTTGGATTAGACCCATGAAATATTATGC
ATCGTTGGGGATCTTGAACTTCTTAACAACGTGTTGTATGTCATGGAACAGATATATGAC
TACAAAATGATTTATAACGTTTTGTTCGTGATAAGACTCATGAAATACAATGCATCGCTA
CAAAGCTTGAACTTGTTAAGTGTGATTACCGAAAAAGTTTGTCGTATGATGCAAAATTGC
AAAACTCACTCTTTCTTGGAGGATTCAATGGTCTGAGTGTTGAAAGGAATTCGAGTACAA
AGTACTCACACTCCAAAGTGAAACGGGTAGTAATAAAGGCAGGAGTGTTTCTGGCGGTAC
GTCATAAAACTAACCTGAGTTGCTCTAAATTACCCACTATGCCATAAGTTTAAAAATGAT
TTTTTTTCACAAGTTGTGTTTGATTTTGTTCATTTAAATCAAGCCCCTTATATATCATAA
GCACATAAACAGTGGCTGGAGCCTCGATCTTTTCAAAAAAGTGAGATATGTAGATATCTT
TTCAAATACATAGTAGCATGCCTGGTGTCCCATGTCCCTCTCCCTCCCTCCCCCTCCCAA
CCCTACCCGCCCCACTCCCTCTCCCT