| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_2549529
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_38007 |
1 |
1097 bp |
MLOC_38007.1 |
Available |
Available |
LOC_Os03g18500.2, FRAME:-3, EVALUE:7e-72, 13103.m02217 protein mitochondrial import inner membrane translocase subunit Tim17, putative, expressed |
| MLOC_38006 |
3 |
1821 bp |
MLOC_38006.2 |
Available |
Available |
LOC_Os03g18490.1, FRAME:+2, EVALUE:3e-16, 13103.m02215 protein RPGR, putative, expressed |
CDS Structure of MLOC_38007
CDS Structure of MLOC_38006
Contig Sequence (6411 bp)
>contig_2549529 6411 assembly3_WGSMorex_rbca.fasta
CTCTTCACGAAGAGCCCGCTTTCCTTGTCTCTTATCCAACTCATTGAAAATATAGTATTT
TAATCCTTACAACCTGCTGCCTGTATTTTATTGTAGTTGCTCTAAATTTGTAAAGGCATC
CCACCGACCTACTCCCAAATTCCCATAGAGTAAAAGTATAGTTTTGTCCCAGGCATCCCC
ACCGACAACCCCTGCGATCCACCGGCCACCGCGCCCTCGGCACGACGCTGCCTCCGGGCC
CCGGCCGGAAGTTGTGCGTGCACAAAATCGAGAAGCGGAAAAACAAAAGCGCAACCCACA
AAGCGACCTTAAAAATATCGCGGCAACGGCCGGCCAATCCCCGCGCGCCAGGCTACGCGG
CCCCAGGCCAAGCACGCGAGGAGCCTCCCCGCCATGGTGGGCATCGCCGCAGGACGCGTG
TGCGCCAGCCGCCAGCCCCCTATATATCCCTCCTGCGGCACGGCTCCTGGAAGATAACAT
CTGATCTGTTCCTGCCTTGCTGCAGTCAGTAGCACATAGTACACTTTGGTGAGTCGAGTT
CGTTCGTGATGGAGGATTCGGTGGGCGAGGCGGAGAGGAGGGAGCAGGAGGAGACCATGG
CGCAGGGGAAGAAGCGCGGGCGAGAGGAAGAGCAGGAAGCCGGCGTTGGCCGCGTGGTGG
AGGGGAAGGCGGAGGCTGCGGTGGTCGAGGAGGGCGGGTTTCTGAGCACCATGGCGTCCA
AGATCGGCGTGGCCATGTCGGGAACTAACGGGAGCGGCGGCGCTGAGGACCGCGGTGAAG
GCAATGGCAACGGCGACGGGAACGCGCTTGCTGTCTCTGACGGCGACGAGGAGAAGGCGG
CCGGCAACGGCATCTTCCACAAGCTGCTGTCCAGCTCGTCTCCTTACCCGCCGGCCACAG
GCAAGTTACTTCGGCTGTAGCCTTTGTCGCGTAGTTTCTAGTACAGTTTTAGTAGTTGAC
AATCTTCAGTTGAACAGAGGAAGAGAGAAGGGGAGGGAAAGACGAGGACGAAGGCGGCGG
CGGCAATGGCGAGCAGGCCGGGATACTGAGCGCCATGGCTTCAAAGATCGGCATGGCCAT
GTCTGGCCATGGGACTCACGGCAGCGGCAGCGGCAGCGGGGAAGGTGTTGATCACAGTAA
AGGTGAGGGCGAGGACAAGGAGAAGGAGAAGGGAGACGCCGAGCCGAGCTCCAACGGCGG
TGGGATCGTTAAGCAGATCATGTCCAACCTCCCTAATTCAGGTGCACTGCCGATCTGCTC
TTTCCAGTTCCGCATCCTTGTGTGTTGCCTCGATTGTTTCAGTTGACAGTGTTTGTTTTC
TTGCCTCACTGCAGAGACTCGGGGCCCCGATGCTCAGGAGGCATCCCTTCTCATCTCCAT
CATCGACGACTAGGCTAGCCCTAGATAGATTATTAGGAGGCACTCGTTATTTCTGGGTGT
AGTTTTGCACCGCCCAGCGTGCCCTCTTTCTTGATGCTGATGTAAACCTTTAGGGCAGGG
ATGCTGTCTGTAGACGTTTTCTTCTAGGCACAAGTCACTACACATGTTTGCACCTTGACA
AGTGTACTGGCCTGTAATCACATTGACCACTGCAGAGAACTGATCGTCCTCGCTTGTTAT
TTGCTATAATAAATAATGATATTTTTACTTTCTGGACCTGATGAGGTTTCAAGTCATTGC
TGTGGTATGCAAACTGTATGCACAAGTAATAAAAGGTTAAATAGAGTTCTCTGAAACCAT
TCAGAGACAATGGAGATCAGACACCACATATGTTAAAGCGAGTTCTCTGAAGCAAAGATA
TAAGAAACACCCCTGCTAGGTGGGAATTAGAATAGAAATGCAGCTAGCCCGGCTCACATT
GTACGAGATCGCATCAGTGAAAATGCGTATGCGACATACCATGGCATCAACCTGGCTACA
GACTGGAGAAATAATATAGCTACTCAGTGCCATGGATTGCCGCAAGACGTAAAATTCAGG
TTACACCATCTCTGAGTACATGCCAACGACTGAATATTGCGAAATAACCAAAAAGTTCTT
CGGCCAATGCTGAATCCGCTTCAGTTATATCGCTCCATGAACTTCTCAATAGCCACAGAG
AAGGCACCAAAACCCACGCACCCGATACATGAAGCTTGAGGGCCACCTGAAAGAAAAATA
CCAATTCTGTTACGGATGAAATATCAAATTGAGCTGCATAACGGACAACAGCATAAGAAC
TTGCTAGTGGTGCTAGAGTGTTTTGCTTATTACTATTGGCGGTTCTGTTGTCCTCATTAC
TATGATTTACTGCTTTATTAGCTGAATCAGAAGTAACAAAAAAAATGTTGCAAAATAAGC
AATTACAATTTCGAGTAACAAGTAAAGAATCAACGGGTACACAAGGTAAGTGGTCAAAAG
ACACACCAACTACATAATGAGTATCTCTCAACACCCAAATACAGTCAGAAATATAGCATT
GGTTGAACTATCTGAAATCTCATAACAGCGAATTTGGGACACAAATTGCTGGTCTGGCAC
ACCGACTACATGATGAGTATGACTGCCCTTCACCTTGCCCTAGTAGAACCAAACTACTTT
TAGAGCGAGGTTACTCCCTTTCTTACATCCAAAAAGAAATGTAGCATTGATTAAACTATC
TGAAATCTCATAGCAGAGAATTTGGGACACAAACTGCTGGCCTGGCACACCGGCTACATG
ATGAGTACGACTGCCCTTCACCTTGCCCTAGTAGAACCAAACTACTTTTAGAGTGAGGTT
ACTCCCTTTCTTACATCCACTTCAAGCAAACCTAAAACATCTGTAACGATTGCAGATAGG
GAAATTCTCTTGGGAGCATAAATTGATCCACCGTAAAAATTAATGTTGGTTTTCATCCAC
AATTATTACAAAAAGACATACCTTTTGCAGCTAAAGCCCCTCCCGTGACACAGCCAGCTA
CTGCCGAATTGGTAATGTCATGCTTTGCCCGAGCCTGCCAGGACATGACCATTCCAAGTG
TCCAAATAAGTATATTTTTTTACAGAAATGCTCATAAATGGAAGGAAAAAAATGTCACAC
TGCATCTACCTTCTCTACGACGCATTCAGCTGCAGAGAAAATCAAGCCCATTACTGCAAA
GGTCTTAGCATGGCTCATACTTTTTCTACCCATCTGTTTTGCCTGGTAGACTATTTGTTG
CCTTGCTGTCATCTCCTCTTGCATTATTGGGTTTTCCAAAGCTCCAAAAAATAGTCCCAT
AAGTACACCAAGACCACCCCCTATTGAATGAAAGCAGTGCAGTTAATAACAGCTGTGCAC
ACTCCATAAATCCATTTTATGAAACATTATGCACTTGTAAGTGGGCCCCATGTGGGATAA
GCCCATACCTGGAACTCTAAGATGTGTAGCATGACGCAAAATGATTTACAGGCACAGAAG
CACAAGGCATTACATAACAACTCAAGATGACTTCTAAGTTAGTATAGGACGGAATAATCC
AGACACTGATTGTTGTCTGTTGTCTTACGGATACCAAATGTCAAACTATAGGAAATACTG
ATACTTTGGCAATACATACAATAGAGTGCACGGTATCAACATCACTGATTCTATCCTCTA
AACTATCAACAAACAAATCATTAAATAGGGCAAAATCAGACAATAGATACTTGAACATCG
CAGGCCTTTGTCATGTTCTAGATTAATTGACAATATCAACAAGCTGTTGGAAAGCTACAT
ATATTGCACAAGTGAAATGGTACTCACGTGTAGACGCACTTGCACAAACACACTGTTATG
GCATGCACTTATTAACAGTAACTATACTGGGGAAAAGAAATGTTAGGTAGGAGCATTAGA
TCCAATGTTAAGTTTCTTCATTTGAAGCAGAAACGGCAGAAACATGGAATGAATGGATCA
GAGCAAACATTTTTTAGGAAACAACTGGAAGAATCAGACCCGCTCTGACCGATTTTATTC
ACTCAGCGAAAACTGCAAAATCAAGCATGCAAACAAGGGAAGGCACATACCAATGCTAAA
AGGAATAACTGATAGCCAGAGGTGGGGGGGAGGGTGGCAGAAGATGAAAAACTACTTCAT
TACATGACTGCTAGGTACACCAGGAGGTAAGATGGCAAACATCCAAGGCAGAGGTAACGC
AAACCTACCAATGGCTAAATTGGTTGTGAATAAGGGTAGGAAAGCCCACAACATCAGTGT
TGACATGATCAAACACCAAGCCGTTACCAGGATGTCCCCGATGTATGTCTATTGCATTAT
ACTTCTTGCATCACTGACATGAAAATGATTCAGAGAGACGCACCGCCAAACAGTAACCTT
TCTAATGCAGTACATCAATATTTTCAGACTATTTAACAAAAAAGTTGAACCACTGTCAGA
CCAACCTTCAATCAACGTCGACCTTGCTATTTTCTGCAAAGCAAGTGGTATGCCTATGAG
GCTATGACACATTGCGTGTAGCTGCAGCGGAAAACGATTGTGCATTGTTAAGCAGGAACC
TTTCTGATGCTCTACCAAAACCCCTTTCAGACTACTTGAGACTTTATCCAACCACTTTCT
GAATACTTGGTCATCTGAAATGTAGAGATGCTCTCAATCTTATGTCTTTGAAAGGTGATA
TGTGTTAAGTACTGGAATTTAATTGGGTTGATTTCATGACCACAACTTTACTTGACACGA
ATCACTACAAAAACTTAGACCCCAACTGTCCCAGGCAAGTTCGCTTGAAACAGAGACATG
ACCCTAAAAAGAAGAACTTGAAACAAAGGCATCTCCATTATGCATTATGACATGCCATTT
CACATCAAGGATCATCAAACTGGAGAAAAGAAGTTTTGTTTTATTGCCACCAAAAGATTT
TGAGCAGCTAGAGTAACCAACTAACTAACTAACAATAGACAGTTTTACAAGTGAGTACAA
CCGAATCAACATATGAACATATTTAAGTTCGAGCGTGTACTTGCTCAAAATAAAATTAAG
TTCATCTCTTGCAGAACTAGCATCGTTTTATTTGCAACTCGTCAGACAAACAGGTGAAAA
GCTAACCATCTAAAGAATGAAAAAACACATCCATGTCACAACATTCAGAAACTCTGATTG
CATGGCATTTGAACAAGATCATGGAGACATATTAACTGGGCATCGTTCTAGCATAATGCA
ATTACAGAGTTATAGTAATAATGCGCCCCAGTAGTAACAAGAGATTTGAGTTGGAGGTTA
CCCATGACACCACTGAGGACGCTCCGGACGGCACAGTTGTTCATCATCTCCTGCCCCTTG
ATCTCCTCCGGCGTTGGCAGCTGGAGCGGCTCCACCGCTGCCCTCTGGCCGGCCGCGGCC
GATGGCTCCGGCGAGGCCATCTCACAGTCTGATCTCCCTCCCCCCTCCCGGTACCGCGAC
GGCGGAGCTAGCTGCGGGCCGTGGGAATCACTGGAAAGGCAATGAATGGGGTTGGAGGAG
AAGCCGAGCCGAGAAGTTCCTCGAGGCTCGCTACTTGTCCTCCGTCCCTTTGCTTTCTTT
TACTCCCCTCCAAGAAAAGAGGCGGCGGTAAGGAAGGGGATCCGGTGGTGCCTGGTGCCG
AATCTCCCCTGAGCTCGCGTGCCTCACGCCCACGACCTCTGCTCCCCGCTACAGGCCCAC
CTAAACGTATTCTCGAGAGTACGCTACCCTGTTCAGTACTCATGTGGCGCGTGTGGGAGT
GTGGGGGCAAATCTGGCCAAACGGCCGTGCCAATCGGGCAGGCCCGAAGGCACACCAGCA
CGGCACGAGACAGGCCCCGACCGGCACAGGCTAATCGTACTCGTGTCCGGCACGCAAGGT
CGTCCCCGGACCGCCATCCTCACCCCGCGTGCCAGCACGACATGACACGATTAACCCGGA
CCAGATCGTGGCTCCTGTTACTTGTCGTTCTGAGGTGTTGCCTCACACGCCTGATCGACA
AGCTTATAATTGATTATTTACCTTCCTTGTTTGTTTATACAACATTGGTGGGAGTGGTTA
ATCTGCATGAATGCATCTGTGAATTAATCATTATGGCATGATAGAGTCATTAAGTGGTTT
ATGCATGCATCTCATCTGCTTTAACTTATCTGTTTTCTTGANNNNNNNNNNNNNNNNNNA
AGTACTCACTGGCTTGTCCCTCACTATTGTCTTGGCCAGATTTCATCGGGGAGGAGCACG
ATGCCATCAAACCCGAAACCTAGGAGTCTAGGATAGCAGCCTTGTGAGATAGAAATTTAT
CCAGGTCAGCTCTTTCTATGGGAATGGAGTCCCGTGAACAATGGAGATTCCTTGAGTCGC
TTCCGCCGTCAACCCGAGACTTTTGTCCAAGCCAGTAGACCTTCATGGTCTTGTAACCCA
AACTTTATACTTTTGCTTGGGATTTCTGTTGAAAATATGCCCTAAAGGCAA
