morexGenes - Barley RNA-seq Database

Contig contig_2549344
Source Contig contig_2549344
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2549344 (8328 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2549344

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37914	1	228 bp	AK375542	Not available	Available	None
MLOC_37915	1	740 bp	AK375542	Not available	Available	None
CDS Structure of MLOC_37914

CDS Structure of MLOC_37915

Contig Sequence (8328 bp)

>contig_2549344 8328 assembly3_WGSMorex_rbca.fasta
GGACGGAGGGAGTAATACAAAAGATGCATAGTACCTATTTAAACCAAAGGATACTTAGCT
TTGCAAAAGATGAGAATGGAACTATTAAAATAAGCTGAATAGTGACTTTACAGCATGGAA
GAAGTTCATGAAGTTAAGAATTATTAATAGAACACAGCTTAACAAACTGGAACACAGCAA
ATGTCCAACATTCTAAGTACTTTCAACGTAATACAATGCCTGTCCCGAGGATCTACGATG
AAGAAATGGAGATGAAAGTAAACAAATGTTGTTTTTACTCACATAAACCATGGCACTGTA
CACAAAATGAATGTCGATGGATTATAATTCTGGTTATGAAATGGTAACTATCAGCAAATG
ATGATAGTATTCTACCTTGAGAATAATCCCAACCGGAAGGAGAATTTCTCTGCCTCCAAA
CCTATTTTGACCACAAATTCAAAAAGATCAATTTGGGGCAAAAACCTTCCTCTTCTTCGA
CTCACTATGTACCAACACAAACTTACCAAAACCCTAGTCTTGCACTTCCATTTTGTAGGT
AATACAACTTTACGGTCACGCTGGACTGGTCGTGGTGAACACATCTGTTGGAGGAAAAAC
AAATGGCAACATCAAGTAACGCAGTAAAAGCATACAGAAGAAACTTAATGCTTAATATAG
ACACCTCATCCATCCGAGGTTTCTGCTTAATATACAGAAAATCAGACAACAGAAGATCTT
TTATTTCTTCAGTGACCAATTTTTTTTTAAAGTGCCCAACCCTGGTTAAAACGAGGTTTT
ATAGAAAAATAAAGATATGTAAGAGAAGGTGGAGGGACTTTAAGTCAGTAAAACCAAGGC
CATGTCCAGTATTTTGTCCCCACCATCCCATTAGAGCTAATGGTACTTGTGTACAAGAGA
CATGCTGAAACAAAACTTGGTCAGTTCTAAACCATAGACCATCCCAATGGTGGAAACCAT
GAACAAATGTCTTGTATAGTGGTATCTTGCAGTGAATCCATACTTTTCTGCTGCCACATG
TCAGATTAAGGTGATGCTCGTCCTATGATCCTTAATTCAAATGACAGCTTGAAATTTTAA
AGTTACATAGTACTCCCTCTGTAAATTAATATAAGATCATTTAGATCACTACTTTAGTGA
TCTACAAGATCTTATATCAATTTTCAGAGGGAGTATAAAGCATCTCAAAAAAGAACAGGG
TACAAGTTTTGCATCCAGCTGGTCTGGACACAAGATGGTAGATTTTGAAGAAAAATATCA
GCAGAAATCATGTTCATTTCCCATTAAGTCACAAACAACTGAAGATACTATGATTTCAAG
ATGATAATATCATCCTGTTTCTTTCCAGTGCACTGATCAACTCCCAAGCTATAATGTGAT
CCAGATATAATAAATGCCATGTTGTTTTCAATCATTATCAAGTTCTGTGTGTAGTATACA
GTTATATTGCAGTAATGGACCGCTTATTTGTATTTTAATGCTTTAAAAGTTAATCTGCCG
TCCGTAACCATCTAGTACAAGCAGAAGGAATATAAGCAGTCGGAAACTTAGAGCAGCAAG
CAGACAATACCTCATCACCACTGCTTTGTCAGTGTATCCCGCACCGCGTTTAATAAAAGC
ACCACGGACCATGCCCATAGGCTGAAAATTGGCATAGCAAATTCCTCATCAGAAAAGATG
TTGCCTCCCTCTATCCATATATAGTGCCTAATGCGTTTTTCGAGGCTAACTTTGACCATA
TGTTAGAGCAGTAATATATGACATGCAAGTTACACAAAGCATATCCTCAAATTCATACGT
GGAAGGAGCTTTCAATGATATAATTTTCACATTATACATTTAATGTACTATTAATCTTAT
CAATAGTCAAAGGCAATCTCGAAAAATGCATTAGGCCCTATATATGGATGGAGGGAGTAC
ATTTTTTCCAATCTAACAATAGTAGTCTACTAGTATAAAGCTCCAAGCAATGGTGTGCCT
GCCTTACATAGTTACGCTTCTGTAAAATAAGAATCCGGATAAGTCTCTCCAAGCCACCAC
TTATAAAGTACCTAAAAGAAAATAGAACACGCATCAGAATAGTGAATAATAAACAGAGGG
AACAATGTCAACAGCATAATTCAGGACCAACAAAGAAGTATGAACAGTTTGACGCTGTAC
TAAATACCGAAATCAATTTCATTTACCAGGTACACTGCTACTAGAAAAAATTATAAGCCT
TGGAACAGTGCAATGATGAGAACACAACTTCAACAAAGTTGAACAGTAAAACAAACTAGT
GCATGCAGTCTGTACAATATCCTATTATTTGATTTTCAAACAAACCAAAGATGACAGGTA
AAGGAAGGAGTTGACAGTTCATACAGAAAAGGGAATGTAAACTGGAAGGGGAAAGTAAAT
GAACATGCAAGCACATAACAAACTCACCCGCCCATTTCTGTGGCCTCTTCCCCGTGGTAA
ATTAATTTACGCGAATCGGCGCCTCTTAAGTGGCAAAGTTTTGACTGGAATAGCAAGAGC
AAAAAAGTCAGGGAAAAGAATCAATGAATACACAACAAAGGTTGAAATAAAATAATTTGG
CACCGATAAATAAATAATTATAAAGATATTAAGCTTAATACAGTAATGGTTATTTTGAGG
AGTATTTAAGTACAAATGTTGGGAAGAACTACTGACTTCGCTTTGCATTTGTTAAAATTT
ATGTGGGACCATAGAAGGCCAAGCTCAAAGACACACAATGCACCAGTACGATAGACGAAG
TATCAAAGCAACTTGGGTTACTTGTCTTTCAAAATTGCAAATTATATGTTCCTAACATAA
CATCTACTCCATCCATTCCAATGAACAAGGCATGCGTGCATTTCAAAATTGAACTTTGAA
CATAAATTAGACCAGCCAAATGTGATTTATATGTGACAAAAATCATGCCGTTGAATTCGT
ATTCGAAAGAAGTTCTCAATGATATAAATCTTCAAGTCAAAGATATATACATTTATTGGT
CTAAGTTATGGTCAAAGTTTGATTTAGAAATGTTTGCGTGCCTTATTCATTGGAATGGAG
GGAGTACCAAGAGCAAAGGAAATTACTTCAGCACATGAATCAAAAAGTGACATTAGAAGA
ATAGTCAAGAATGGGTAACAACCATCAACATAATCGGCAATTGACCAAAATTGAAGGTTT
GTCTGATTGGCGCCCCATCATTAAATTGGAAGACGGCCTCCACTTTGAATTCGCCACTAT
ATGAAATTCTACCTTGCCTGCACTGCTCCCACAAAATGAAAATGGGAAAAGGGAGTCAGA
CCTAAACACACCAGTATACATTTGCGAAGAGAACTCCAATGACATAGCAAATCAGTATGG
ACTATGATATGTGTCAATGCTTAAGGTAAAAATGGATAATATTGCCAGGAAAAGAAAAAT
ACAAACCTCCTGCGGGTAGAGCGGTTGTCCCAACCGACCATCCTTCATTGGTGGGAGCAC
ATGACCCTTCTCTAAGGACAGTACAGACAATTGTTAAGGAGAAGATAAAAAGAGAACATT
GACCATGCTGTTTTATGCATCATTCACTATGATATCCAAGTATCGATTAATGCAGCATAC
CTTATAAACTTTACTGGAAATTAACTGGTTTCATGATAATTAAGTATCCGCATCCAGAGA
AGCAATAGGCGAAAGCTTAATGTCTGCTTTAGTAGTTCTGATGAGTTGGCACCAAGTGCT
CTTTAGAATGACTCTCACCGAGTTTAGCCTAAAGCATATATTAACTTAGCTACAGCTTAG
TAACAAATGCAAATCCACATACAAAAAAAACGAGGGCCTGCAACTAGAAATACTGGTGTC
ATGCTGCAGAAAATCTACCACTATGTCTTTCTGTTCACTTCCTGCTCTGAATACAGATGA
AAGTGACTGTCCTGCAACAGCTGCTGAGCAGGCAAGCAACGGGAAATTGGACACTGATAG
CCGGTACTACTTGCTGCAAGTCGCGATTGCTAAAATCCTATAGCTAACATAACAAGTACA
ATGACGAGCAAAGCATAAATCTGCAAAACAAAACATTTTCTGAGCGAGTGAATAACGAAG
GATATTTCTGAGGGTAGTGTTGGAGGAGGGGTGGGTGATCTCCATGGGGCGGATGGAGAG
GAGCATCTTGTCGAGCCCCTCGTCGAGGAAGTAGTCGAACGACTCGATGTGCGGCCGGTA
CAGCTCCCGCAGCGTCGCGTAGTCCTCCTCCTTACCCGCCGCCGCCGCCGCGGCGGACGA
CTTACCGGACGCCATCTGCATGTCCGTGGGAGGGATACGGTGCGCCAGGGTATGGCACGA
AGGGGCAGGGCTCCGACGAGTGGCGGCGGCGTGGGGGCTTTCGGCGGGAAGGGTAAAACC
CTAGAGAGGGAGGGGAGGAGGCGGCGGGCGCGTGGGGGTTTAAGGCTGCGGAGAAGAAGA
CCCACGAGTCCACCAGCACGTATCCTTTCTTTCATAAAACCGGGCCCAATCCGAGCTCCA
GAACACACACTACTTCTTTTATTTTCTTCTTTAGACTAAAAAAAAAGTGTATGCGAGAGT
GTCTCTCTCTAGTGATTGCTCTTGTTTTACATATGTTTAAGGAAACCCTTTAAATCAGCC
GATTGATCTCTTGGGCCTTTAAACCGCCTTCTGTGTCATCGGATTGCACGAAATCGGACG
GCTCAAATTGCCATCGTTCGAATAAGACGCAGCCCCGATCAGGTTGCAGCATTGTAACTC
CTCGCGCACGCGCCGCCCCGACCAGGTGGTTTGGTCCACGAGTTCACCCACGATACATTG
CAGCTCGACCAGGAGCATTGCAACGTTCCCTCCTCCTCTTCCTCCCCTCCCTTCTCCTCT
CCTGCTCCGATTTGGATATAGAACCGGCGGATGCGACGGTCGGTGCGACAGCTGGGCAAG
GGAGCGGTGGCGCCGGCGGGCACAGAGGGAGCGACTACTCGCGCATCTTCTTCGTGCTCC
ATGGCCGACGATGACCCAGAGCCGAGGTCAGTTTTTTCTATATCTCATATGTGGCGCAGT
AGGAATCAGAGCATTTTGAGAGGGGTGGACGGTGGAGGACCTTGGGTAGGTGTAGGATGG
GGTGGTACTCGTGGATCTGAGTAGTTTTTTGTAGGAGGAGTTGCTGCGGAGTTGGTGTTG
GGATCGTCAGCGTCCTGCCCTCCGCTTTGGCTTCACTGCACCGGCGATGGATGCCACTCG
TGAGGCTGCGTCCATTTTGCATTGTTTAGTTGTCGTTGCGGCTGCGAGGCCTACCGTGCA
AGTTGGGGAAGTTGGGGGCAAGCAAGCGTTTGAAATGAACTGATGTGACGCCAACACACG
ACAGCCACTAGTTCTTAATATTGAAAACGGGCTATTCATGTCGAGATGGCGATGTTTTTT
TCATGAACAACTAAAAGCATCCAAGTTTGTCACCGGGTGAACGATTTTGAGTGCTCAACT
TACTCGATCGAGACAAACTTGAGTGTCCATATTAACGGCATATCTTTGTCATATCATATC
AAATGGACTCATCCTAACAGGGAAAGCAACATGCCAGGGGGATAGTCATGTGGCAATGTC
CCTTGGTCAAATTAGTCCCATTTTCAAGAGGTTTAACAATTGACAGTACACAGGAAAAAA
CTGTCGTCTAACATATATAGCAACAACATTGTTGAGTTGCTACAACCCGCAATACCAAGC
AAGCTAAGCAACTACTGATTTTACTCACTCATGCTCACACAAAGCTAGCCAGCTACCGAT
ACTGAATTAAATACCGGTAACATACCAGCCAAACTACTCACTCACGTTGACACAAGCTAG
CCTGCTATATATAGGAAATGCATCACAACTCATACACACCATTGGCATTTTCTGCTTTTT
TTTGTTATCCTAAATTTTTAGTGTGCACTTTTGTAGGTTGTTTGTTTTGTTCTCTTCATA
TGCATTTGCACATTGAATACACTTGTTGCAATAGTCATGTTTTTGTTCTTGTTAAATTTA
CATTTGTTATTCAGACTGAGTTAAATAGTCATGTTGCAATAGCCATTCTTATTCAATTTG
AGTGAAATTAGTTGACTAACTCTTATGAGGAAATTAATTGAGTAACTCTTATTATGTTTT
TTTTCAGTTTCTCTGTTTTTATAACTTAGATTTTTTGTTATTCCTTCTGTTTTTGTAGAA
TGGACAATAAATGCCCTGCTGCTGATGGGTCATTTTCAACGCGATTCTCAGCCACCCGCT
TGCGCCAGCTTGCGGATCGTCAGCCCAAAAAAAGAAGGATGTTATACGCCTATGCATTTT
TGGTTCCCTCTTGAATGTCAACTCTTTTTCTACACCCGCTGATCTGCTGGATTGGGTAGT
CATGAAAATTGATCCAGAGAAGGCGTTGTTTAGGTATGCATTTTTCAAACATATCCCTCT
TGAATATCATCTTTTTCCTACCTTTTTGTTGCAATAGGTTTTGTTTCTTATAGGCTCAGC
TGTTTACTCTACTTGTTGAAGCCATAGACAGAAGTATGTATTGTTTACAAAAGACATGGT
GCGAAAAAAAAAATTAATATACCTTCTGCGTCAAGGTCAGTCGAGTTGTTGAGGAGGAAC
GAGCCACATGTGTTGCATGGACCCTATCGGGTTGGGTCGAGGGCCCCAACAAGGCACACT
ATTGAAGTGCTTGAAGGTGCAGACGTTCTTGATGTTGTTACTGTAAACAGGGCATGGTAC
TATTGTGTATTGCTCTTGTGCTTTCTCTTAGTACTGGTAACATGGTTCCTCTGAGTATCT
TGCGAGCTTGGTTGACATGGACATGATCAATGAGTTTGCTTGGGATGAGCATTTCTTGGT
TGTTGCATTGAATGAGGTCAATAAGTATCACAAGAAGAGGAATGAAGGGAAAATTGCCTT
GTGGATCGGTGACTGTCTACCAATGTTTGCGGTATGGCCCATGAGCTTGTTGCTTGTCTC
TATTTTGTTTCATTTCTTTGCGCCGCAGTATCCATCTATGACAGGTTGTCTCATAATGCT
ATTTTTATGTTTTGTTCAGATTATTTACATGGACTTCGTCGAGGTGCCTCATTTGCTGGC
TTCTGAGCATAGAACCGATTACTCTCTCCCAAGGTCTTGCTTCGTTTGCAACGACGACTT
TAAGTTGATAGAAGAAATTGATAGGAATAAGTTAAGCCTTGATAAGATTGATTTTGGAAA
ACGGAATGTAAGAGCTCATTCTCCTTCTATTTTTTCATATTTTTCATTCCTTTTTGTTTG
GTTGCGGTTTTAACCCTTTATGCACTGGTTTTCACAGCTTCATCGTTTGGCGGAGACGCC
GTACATACGACTAGAGGGATGCAATGAAACTCGACGTCAGAACAACAAGTTTGTTGGGAC
AGATGCACACATCCTCGATATACAAGCAACCCAACCATGGATGGATGTGAGGTTGGCGGT
GATGTCTGTGGCTCTCTAGATGAGTGGCTGCATCCACTGCCTTCAAGTGAAGAATTGGAG
GTAAGCACTTTTTTCATGAGATTCTCATCATTTTATTTTTCAGCAAATAGTTGTTGCGAT
GCTTTATTTTTGTTTATTCTTTTTGTTGTGTGTGCCTGCTTTTCATTGTTGAGGGCAAAC
TAAAATATTTTCTTTGTTTTCATTTGTTTTTTCCTTGAAGCAGATCCCAAGCCACATGAT
ACACAATATACGATAAGCACAGGAGCTCCATGCAACACAAGTTAAGAAGGCTTTTAAATC
ATTTGGCCAGGTTCTGGAAGAAATGTTCTCTAAGCGTGTGGCATCTATTTTGGTCGAAGC
TAATGCCACTGCAACAAGCAGCAATGATCATATGCCCGAAGATGTTACATTTCATGATCG
AGCCGGCATTGCAGCAGATGTAGATCACAACAGGGCTCCCATCCACACTAGCCCCGAAGG
TCACAAGAGTACTGCAACACAAGAAGTGGATGTTGACAAGGAAGTTGCAGGTTGTACCAA
CACCAACTAGAGTGAAGCACAGCGGGACATTGGTTTGGAGAAAATGCGGAGTTGCGGTTT
TCAAGGGATGGAAGATGTGCATCAAGGACCTGATATTGGAGAACGGTAGAAGTCAGTAGG
TGTTGAAGTTGTGGTGGGAGATTTGAAAGATCCAAATGTTGTTGATGAGGGTCGGAGTCT
TATTCTGTCACACGACATGGTGGCTACATTGAAAGGACTTGCCATGGAATTTGATGATGG
TCCATTGTTAGAGCATATATCTCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTTAAGTTATGTTTATAGGATTTGTCCATAGGCACT