morexGenes - Barley RNA-seq Database

Contig contig_2549334
Source Contig contig_2549334
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2549334 (7677 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2549334

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37908	1	3351 bp	None	Available	Available	LOC_Os01g59230.1, FRAME:+1, EVALUE:3e-41, 13101.m06293 protein retrotransposon protein, putative, unclassified
MLOC_37909	3	1227 bp	AK364088	Not available	Available	None
CDS Structure of MLOC_37908

CDS Structure of MLOC_37909

Contig Sequence (7677 bp)

>contig_2549334 7677 assembly3_WGSMorex_rbca.fasta
GCCGCCGCCTCCTCCCTGCGCCGCGCCGGCTGCGGCGCCCTGTCTCCTGCAAACCCCCTC
CTATCCTTATAACCTAAGGCAGAGGCCTGGTAGAGCCCTAGCTCCTACCAGCTTTTTTGC
GCAGTGCTTCACTCTCTTGATGTACCATTTTCTTTCGACAACCCATCTTCTCTTATATCT
TCTACCGATGCGGTGTCTTCCTCTGATGCGACATCTTTGTTATCACCTTTGGCTTGACTC
TGACAGTTTTTTAAGACTTTATGCTAGACGAAACTGTCAAGATGTGGATATTGGATTAAC
ATTTTTTTTCTAGTGTTACACTTCTTTAGATGGAATGCTATTGCATACGCTATGCATTTG
AAGGAAGGGGGGGGGGCATTAGTGTCTAGGTAGTCCTTATTAGTCTATGTTTCCTTCCTT
GTACCCCAAGTCTTGTGTACTATATTTTTTCCTCTTGGGTCTTATCCTTGTGCAAGCAGT
GCTCTAAGCCGCACCCATCTTTCATCTTATCTCTGTTGATCCCCCCACTGTGGGTCTTAA
GGCTATTGACAAGATTCGTATAGTCTTCTTTTGGAAAGGAACTGATGCCTTTGCAGGCGG
GCATTGGTTGGTCAGTTGGAAGGCGATCTGCATGCCAAAGTGAGCCGGTGGCCTCAGCAT
GCTTGACCTGTAAATCATGCGTAGAGCCTTCAATCTGCACTGGGGGTGGAGGTTGCGCAT
GGCCGCTGACATTCCTTGGCGTTACTACGGCACCTCACTGGAGGTTGAGGAAAAGGATCT
GTTCAATGTTGCTGCAAAGGTTGTGGTTGGCAACGGCGAACACACCCACTTCTGATGCGG
TAAGTGGCTTATTGGTGTTTCCTGGACATGGTCGCACCGATGATTGTCGACCTGATCACC
CCCTCTACTAGAGCATGCAGAACGGTGGTCAAGACCGTGCTTGATCCGGCTTGGTTAAAA
GACGTAAGGCCCCTCGTAAAATCCATGCTTATCTTCAATTACTTGAGCTTTGGGAAAGAG
TTTGCGGTTTAATCTCCACTCGGAGCACAATGATGGCTGTTCATGATCGTGTGGGACGCT
ATGGTCAAGTCCGTCTATGCAGCACACTTTGTCACTTCTTCTGGGAGAGGCTTCGATGAG
GCCATTTGGAAGGCTAAAGCCCCGCTCAAGTGCGAGCTCCACCTTTGGCTTGTGTCGTGC
AAGAGAATCTGGACGGCCGATTGCCTTGCCAGGAGAGGTCTCCCTCATAACAAGCAATTT
GCCATGTGCAGTTCCGTGCCTGAGGACTGCAGTCATCTCTTTGCGGGCTGCACCGTCACA
AATATAATTTGGAACTCCATCTTCCAATGGGCCAACTTACAGGTGTTTGTCCCCACCATG
GACCAGGACCTCGTGTCATGGTGGATCACTGCTAGGGAAGCTTACCCCGGCAAGGACAGA
AAGAGGATTGATTGTCTTGGTAGAAATGAATGCTTGTGATTTGTTACAACAAGGTTACTC
CCATCGTTCAGGCCGTGAATCAGCTGAAGGCGGATGCAGAGTTCTGGCTAGGAAAGATTT
AGGTTCTTAGGGGCTGTTGCCCTTTCTGTTTTGTTTTCTTTGCCTTGTTCTGGCCTTTAC
CTGTTCTATGATTTTCTTGCCTGGTCGTTGGTTGTGTTCTCGTTGTTTTGGACTCAGGTT
TTGACCCTTTTTTCTTCTATAAAGTTCACATGCAGTTCTCCTGCATGGTTCAAAAATAAA
TAATTAAGTATAAGCATATCTTTTCCTCGTATCTGTAGCTTTTTGAGTTTGTCCACAACA
GCCCGCGCGAGAAAATAATCTCGTCAAAATCTTGTATGCATTGTTTTGAAGTATTTTATT
GTGATCTGCGCCATAAGGGCATATCCAACGGCAATTCACAAATTTCCTCATGCATCCGTA
CGCGGACGTGGGGATCAATCTGCGGACACGGATGTGGGAGGCCGCCATCAGCCGTAGCCG
CATACATTGCAAATACCTTTTCAACAAACCGGATGAAATTCATGCAAACATGGACGGATT
TTCATATAAACATGACGGATTTCATACAAACCGGATGAAAACGGTTACATTTTGGACACT
TTTAACTAAAAGATAGAACTATGTGCACGCACGGTCGCGGGGAGCTCCACTCCCAAGACA
AGTATACCCTACACTAGTCTACGGCCGACCGCGACGTACCCCTTTGTCTTAACCCATGTC
CGGCAGCCTGCTCATCGGACTGATGGGAGCCCCGGAGGCATATTCCTCCCAATTTCCTCA
TCTTCGGCTACACCACTCGTCGGAGTGGCAAAGGGGGTGCTTCAACCGGAGGGAAAAAGT
TGCATCCGCTTCCGTGAAGCGCAGATCCGTGCTTATTTTTGGGGTGGGGAACGACGATGA
CATGCGGGAGAGGACGAGGCACCGGCTGTGGACGTCGACAACTCGTCTGCGGTGGGCATC
TTGGGACCAAAGCGGCGGCGGCGTCTCGTGTTCTACTTTTCCTCGGTGTCATCAGCAGTC
ACGTATGCGCTGGCCACCGTCTCGTCCATGCCAGCTGCAACGGCCGCTCCACGTGCCTCC
GTGGAGCAACTCGCCACTGCTTCGCGAGCTGGCTTGTAGCGGCAAGTTGTTGAACAACAC
GTCGGCTTGGGTCCGCACCTTGCTCCTTTGGGCCATGCGCGGGAGTCGGATAAGAGCTGC
CTCCTTGCTTGTATCCGGTGGGCTAGGCGGGCCATCCAGCCAACTTTTATTCCGGAGAAC
CGCTTGTCCTGCTCGTCGGATTGCATTGAAAGGGTGAAGGAGGAGATCAGAGCGAACTTG
GTGCGATTCTTGCCCGGCGTCTGACCTTGTCTAAATAGAGGGCGGACAGGAGGAGCTTGC
CCGACGTTGCGTTTAATGTCGGCCCGCTCGTGAATGGACGTGTAGTCGGAGTAGGTTCCC
CGACTTTCACGCGGGTTTAATGGAGGCGCCGCTTCAATGCCGGAGGCAGTGAGAGTTCGC
GTCCGCCCTGAGCCGTCTTCAATGTGGAGCGGCACACTCTACAGCAGCATGTATGTAGAT
AGCTGGCGCCGGGTGGGAGCGCGTGCGGGTGACAGTGGGTGGTTTGGGTGAGCCAGGGCG
GTCAGGAGCAGGTGTGGTCGCATGTCGCGTGTCCGGACTCCTGCAAAACCTCACACGTTT
GTCTCAGGTTTACGGGAGAAAGTACGTCCCGGTCCGGACCACGGACCACGCCATGGACCG
ATACAAGACCGCGTTGGATGGCTTCCCCGGTCCGGACGCATGCTAGATGTTTGCGGGTCG
GCGTTCGGGATAACCTAACTTGGTATTACAATTTGCATAAACCACACAGTTATATGAAGA
AAACCATGATGTTACTTAAGTTGTGTCTGCAAGATTTGTGGGTGCTTGTACTGCCTACTT
CATGTCAATAGGTTATTTTATAAATCATACCCCCTCCATCCCAAAATAATAGGTTATTTT
ATAAATCATACCCCCTCCATCCCAAAATAAACGTAGCTGATTTAGTACAAAGTTGTACTA
ACTTCGTATTAAATCAGCAAAACTTATTTTAGGACTGAGGGAGTACTATTTTATGACATC
CAAGTATGAGATCACTTTCGGACCGTTCTAGCTTTCTGTTTGGTTAGTAGTGCTGCATGG
TCAAAAAGAAGATTATACTTCCTCCGTTCCTAAATATAAGTTTTTTCAGAGATTTCACTA
AAAGACTACATACGTATGTATATAGACATATTTTTAAGTGTAGATTCATTCATTTTGCTA
CGTATATAGTCTCCTAGTGAAATCTCTAAAAAGACGTATATTTTGAAGCGAAGGGAGTAG
TAAGTATTACCTCTTAACTTATATTTAGTTACAGAGGTAGTACTAAATAACTCGCACTAA
TAGTAGTTATGGCATAGGGGCATTCGGAATTGACTCTAGTGTGGAAGTTATTTTCGTTTG
TATTGTTTTGACTTCTAACGTCATCCTAGATATGCATTATTGAGTTTAATATATTTTGCT
AGTACTTTGTCTTAAAATGTAAGACGTTTTTTAACATTGATAGGGAGTACATTTAAAATG
TTGGCCTTAATAGTTCTCTTACTCTAAACTAATGCAATTGCAGGCGTTACTTCTTTCTGA
TAACATTTAGGTCCTACGTCCATTGTACATCCTTGCATGAAGTAACATTTGCATCATGGA
TGGAGGCTAGGCCCGAACTAGGCCACCTCTGCGATAACTTAAAGCTGGATAGATAGAATA
TACCTTGGTCATTATTGTGGAAGTCGTGGGACTGGTGGACCGTGGACTCACCGTGTATGC
ACTAGAGAAGGTGGTACGGAAAGAGATGAATAAGGAGGATACATGATCTCGAAGGAGTAT
GTAATGGCTGAAAGAGGGACATTGTATTGAACTTGCTTCTGCTAATTAATAGAGGCAAGC
ATGCATATACATTCAAGCTTGTAAGTTGGAGTAGGACAGTAAAGTTGAACTTTCCGATCT
ACATGTTTTCCACTGCTTGCAAATTATAGTGTACTAGCTCATTTAGATGCATGGCCTTCT
TGTCCTCAACAAATCTGGATTTTAGGAGCTCTTCCTGTACTTTTTAATATGCTCCCTGGC
AATATTTATGGATTGGCCCATTTGTAAATTATGTGAACCTGCTTTTCGTAACAGTTCTTT
TTTACTATCCATGTTCAGGTCATGATCCGAAAATAAGAGGGCTCATTTTTGCATCATATT
GAATTTGTCATGGGCCGGCCCTGTCACACCTAACCACCACCTGATTAGTGTGACACGGGT
TCTTAAAAAAAAGATTAGTGTGACACGAGACCTGACGGGTGGGACCCATGGTGGGCACGC
GTGAGTAGGGGTGGGCACTATAAAACCAAACCAAACCGAACTGTATTAATTGATTTGTCG
GTTTATTTGGTGGTTTGATTTTTGGTTCGGTGGGAAATTTTAAGGTTTTCTGTTGTTTTG
TTTTTGTTTGGTTTTTTATGTCCAGAAACCGAATAGACCGAACAAATCGATATGTGTTAT
ACCTCATGTAATACCTTGTTTCTAAGAGTGTAACAGTATGGAGACATCACACATTTCTTC
ACACATAATACATTTCAGGTTTCATGTGATTTTTCTTATTTAATTATGGTTACTAGTTTG
CTTGACCCAATAAACCATAGAATGATACTAAGGTTGCTAGAACTTGTGATTATCTTTTTG
CATATATACAATTCATGCAATTCAAATCAGTGCTCTCGAGTCATTCCACTTATACTGATA
AGTGCATGAATTTTGATTTTTCGGTTAATCAAACAAACCGAACCAATATATAATGGTTAA
TATGGTTCAATTTCAAAATTTTGAATGACTATTTCGGTTTCTATTCCTCTAAAACTGAAA
TTATATAGAATCGAATAAATCGAACCTTATTAACCATATAGACCGAACACCCAGTTCTAC
GTGTGAGTGTTAGCTTAAAAGGGCCAGTCTGTTGGTAGAGGAAGGCATGCGAGTTGTAAA
TACTTTTGTATCTCAATCATTCCTCTGGAAATCTCATTCCCTTCAATCACCCTTGTTCGA
TCTCTTCTCCTTCCCCTACTGGATTGTCTCTTCTCCTTCCCCTACTGGATTGTCGATCCT
TCTCTTGGGTTTGTTACAATTGATATTCAGAGCCATGTTTTATCGATTCGCCAAGATTTT
TTCCCCGCCATCTAATTTCGTGCGTGACCCTGATCGCGAGCTCTACCTTGTGGATCTCGC
CCAAAATCCTCCGTCGGGTTCGATCTAGCCACCAGGAACGATGGCGCTGCCTGAGCAATC
GGTGTGGAGGCGTCAAGTGCTCATCGCCATGGAGGAGGGGAACAACCACCTCACGTCGTT
GCTCGAATCCCTCGCCAATTCGACGACTAGAAGGCATGCGTTCAATGCTTAGATCTCTCG
AGATCTGCGCAAACTCGACAAGCAACTCAACGTCATGTAGGCGGATGTCGACGTGGCTCG
CAAGGCAGTTGAAGGCGTCATGTCCCCGTCTGGTTCGGTCACCACGATCGATCCACCACC
TCCATCACCCCCGCCGTCGTCACCACATGCTCCTCCCCAACAACAGCCTCCGCCCCCGTC
GCACACACCTTTGGATCCACACCGCCCTTGCGGATCCCGATTCCGTCGCATGTCCCGTAC
CAGACCGTGGCACCACAAACTTGCTAACCATCGAGGATTCAGGGAGAGTGGCTACCACAA
ACCCCCCAAGCACGACTTCCCGTGCTTCGACGGATCGACACCCTACCTCTGACTGGATCA
GAGCCTCGCCTACTTTGAGCTGTACAAAGTGGCGCCAACGCTCTGGGTGGCCACCGCATC
GCTCTACATCGAGGGCCAAGCAGCACACTGGCTCCATGCTTTTTGCCAAACACATCGCGA
CTTATCGTGGGAGATGTTTACCGTCGCGATCCTCGATGAATTTGGCGTCGAGGAGTTCGA
GCAGGTGATGCATAAGCTCCTCCAAGTGCGCCAGACCAGCAGCGTCGCGGAGTACCGCAA
CGCCTTAGACGAGCACATGTATCATCTCCTCGCCCTCGACCCGTCGATCAACACCAAGTT
CTTCATCACCCAATTCCTCCTGGAATTGAAGGACGAGCTTTGTGCGGCCGTGCGCCCCCT
CCAGCATCATCAGGGCCTCGGTGCTGGCATGCATCCAAGAGGATGAGCTCGATACTCACG
GGCCACGACCACTGCCAGCACCGATGGACCGCCCACCGCCGGCCTCAATAGCCCTTTCGT
GCGCGTCGGCGGCCCCGCGGGCCACGAACGACGATTGGGGCTAACACCGCCACCCGCACC
AAGCTCATCACAAGGTGCACAACAACTCGGTGGGAGGCCACTCCGGCTCGACCGCCACCT
ACCAGCGGGTGTTCAAGCTCTTCCGAGTGGCGCGGCGGTATGCTCATCACTAAACCATCC
CAACTTTGATTTACCCCGGAACCTGAATCATATGATCGTGACCGTTGGATTCGGATCAAC
ACCTTTTTACCGTAAATCATCATCGGTTTGTCAATTGGACCCCTAACCTAATTATTTTTG
ACCGTTCGATTTTAAGTCGGAGGGTCCAAATAACCCCTCGGCCTAAACCCATTTACTATT
TATGGATCCACGTAGCCAAGTTCACACCAAAACCTAATTTATAGGGATCCTCCCTTGTCC
CGTCGGCGTGCAACCACCCACCTCGGGATCTCCCCTCCCGATCCAACCCACTGCCCAGCT
AGCAACCAGAGCCCCAGCCGATCCTCCTCTACATCTACCGGGTAGTCCAGCGCCCGATTG
CTCCTCTGCCCCGGGACGCACCTGACCGCCCGAAGCCGCCCTCGTCGACACAAGAATGGA
GCACTATCAACCTGACCACGAAGGTCTATTCCTGCAAGAAATCGAAGAAAAAGCAAGAAT
GTGATATTGCAATCTGAATATTGCGAATATAGATGAACTATTGATAAGGGTTGGGATCCT
AAAGCGATCTTAGTCTGGTCGTTGGATATAAACGAAGTACACGAAGTTGCAATGACTAAC
TTTTAACTAAACAAATCCTAAGCAAAAATTTACTAGGTTGATCTACTTATGTAGGAGCAA
GAGGTGGCGGCCAAGGAGGTGGGAGGACGTACCAAGGCATCCTAAAACTAACCCTAG