Contig Data
morexGenes
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Map Locations of contig_2549298 (5844 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_2549298

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_37885 4 4141 bp AK251445.1 Available Available None
MLOC_37884 2 647 bp MLOC_37884.1 Available Available LOC_Os02g55980.1, FRAME:+2, EVALUE:2e-82, 13102.m06427 protein vacuolar protein sorting 55 family protein, putative, expressed





CDS Structure of MLOC_37885






CDS Structure of MLOC_37884






Contig Sequence (5844 bp)

>contig_2549298 5844 assembly3_WGSMorex_rbca.fasta
CCCCCCGCCCCCCGCCCCCCCGCGCGGGGGGCGGCGGCCGCCGTCTCTGCCTCACAGCCC
GCGGTAAGCCCCCCCACCCTTTCCGCCCCCGCCACCGCGGCGTTCCCGTCCGGTTCCTTC
CTCGAATCGGGGCGGGGTGCTGCCGGGGACTAGAGAGGGATAAAACACTCTGTCCGCGTC
TCTCCGATCTGAATCGCCCCTTCGTTCCTCCGGATTGGGCCGGCCAGCCAGCCGGGGAGA
GGGGATTACTTTGCGTCGCGCACGAGTCACGATCGAATCCGTGGATGTGTCTCGTAGGTC
TCCGGCCATCGGAATTCGGTACCCTAAGGCGTTCCTTTTCGCTTCCTCTTTCCTCCTTCA
CACCACGGCCGTCCGGAGCAGACGCCGGTGGCGAAATTCGACCCCGTGTGTTTGCTTCGG
ATGATTTCCCTTTGCTGCTCCTAGCTCCAAGCCTGCGACCAAGTGTGAGGTCTGACAGAG
GTGCCAATTCATTAGTCCGAGGCACAATGAGAATATGGATCGTGACGCTGTGTATTTAGA
CAGGTTTAGAGCATCCCTAATACTAGTATCCACAAGATATAGTTTGTTTATGCGTATACT
CTGTAACAAGTCAAATGATTGTGATTGGGTCATGCGGAGCCGTCGGTTGTTCATGATCAC
ACTGTTTTTTTCACCCAACTATGCCAGCTTTGTTTTTGATTGTCCACCTTTTACTCGTTC
CAGTACCGGTATCTGAAGAACATCAAAGGAAACGATGGCACTGTCACGCAGTATGAGGAC
ATGTTTGCATAGTGGAAGACTTGCCGCCCTGGCAATATTAGTATCTGGTGGAATCGTATT
GCAGATTTTGGTAAGCTTGGACATTTAACATCCCGGCGTCAGTTTTTTTTTTAATCATTT
TCTCGATGTTGCCTAAATCTCTGCAACTCTGCCTTCTTCAGGCCTGTGCTCTTTATAACA
ACTGGTGGCCAATGTTAACAGGTTAGAGGCTCTTGTTCACGCTACCAAACCTTTATCTGG
TAGTAATTGTTTTCAGGAGTATGTAAGTAATTCATGACATTTTCTGCAGTTCTGATGTAC
CTCATACTACCCATGCCGCTCATATTTTTCCTGGGCTCCGATTCTCCATCCATCATGTCG
AATGAGAATGATGGGTAAGTGATCATCTAATACCTGGTAACCAGTACCGGCTCTTCGTTA
TTAATCACGTTTGTCAAAACTGATGATTCACAACAGTTTTTTACTTCAAAATATATGCCT
TACCTTAGTGGCGCAGGTGGCACTTGTAACCTTTTCTGACAGAGGTTCTTACACCATATC
TAGATTTCAAAGGATTGACCAGTCTTATTGTGGAACATCTGTGATTTCAAAACATAGTTA
TTGTAGCTTTTTTTCCTGATGCAATTTTGCCACTGTATGCAGGTGGGTGAACTTCACCAA
GTTCCTGACGGGCGCGTCCATCGTGGGCAGCATCGCCATCCCGTCGATCCTGAAGCACGC
CGGCGTCATCGGATGGGGTGCGCTGACGATGGAGCTGTCCTCCTTCGCCGTCTTCGGGCT
GGCCATCGTGTGGTTCCTCCAGATGAACTCCGAGGACGAGTACAGCGCCTTCTGATCTCC
AGCGCTTCATCCTCTCCCGAACCTGTGATCTGTGTGTTTCTAGTGGCACCCTGGTGGCAC
CCTGCTAGAAATAGGGATCAAACTTGTGAATATCTGCAGTACGATTTGGAGCATTGATGC
GTTTGACCTTGTTTATATCAGTGAAGTGAGCCTTTTCAGTTGCATGTACAGATATCCTCT
GCCTGCTAGCACTATGGATTTTTTGTTGGTAGGAAGTTGAACATCCATTGATGATCTCAC
TTGCATCAGTCAGCTGTTTGCCATGGCATCACTGCATACTCTGTCTACCTTCTGCCGCCT
TTCGTCAGTATGATATCTGAACATAATGCATCTTGCTTCAGTCTGACCGGCCAGTTCTGT
TGACGCATAGTTTCAGTTCAATTCCATTTTTTCTCCTATCTCAAAGGGGAAAACTTCAAT
CTTTTTAATAATGTTATATTTTTTCTCCCATCCCAAAACGGAGAGAGAAGTTGCTCTGTT
GCAACCACATAGTTTTTTCATAATGTTCATCTCTCTTCTCCTGTTTCAAATATTGTCACC
ATGTTTCCAGAATTTAATTTCCATGGACAAATACTTCACGGCTGCACAGCACAAGCAACC
GTCCTGACTACAAATAGCCGGGGAAAAATACTTCCCCTGCTATTACTCATCTCAACTATA
CATCAGGTTCCTACTAACTTCTTAAAAAAATCGCAACGGCGAAGCAAAAAGGAAAAACCA
CCAGAAGCATCTCTACATCATGCCAGTTCCAGTGTAGGCGTTGCTGGTGTGGAGCTGCAT
CGCCGGAGCATAAGGGTAACCACCACCGCCGACGGCTGCCGGCGTGTACGATCTGTCGAA
CGGGTTGGAGGACGCCTGACGATGGAGCGACGGGTTGGAGGATGCCTGGCGATGGAACGA
GGGATTGGAGGATGCCTGACGATGGAGAGACGGCGCACCCATCATCATCATCTGCTGGTA
CTGCTGCTGGTACTGGTGCTGCTGCTGGAGCGCGAAGGCCTGCTGCTGCTGGAGCATGAA
GGCCTGCTGCTGCTGCGCCGAGGCGTACAACGGGTTGTGCATCGGCTGCTGCTGATACTG
CTGCTGCATCATCGACGCCATGGGAGCCGATGATGCCACCGGTGCCGGCTGCTCCCAGGG
GTTGTAGCTTGCGTTCTGCTGCGCGTGCTGGTGCGCGTCGTCGTAGAGGCTGTCGAGTGT
GAGCAGGTCCATTCCACCGGCCTGTAGCACGGCAAAATGTCAGTCGATTTCAGAGACATG
GTCATCATCAGGTAAAGAAATTGCAGGTAAGTGTTTCAGGTATTCACCAAATTTCTCGAA
GTAGCAACATTTTCAGTTGCACTGGGTTCTGTGATGAGTGCTAGCTCCCAGCTCGTGGCG
ACATTTTCGGAACCAGCAGCAGCTTTAGGCCCGTTATCTGCAGCAAAGAGCAAGAATTGG
CAGACGCATTTCAGTGCCTGGGTTTCTTCTTGTTTTTCCGACATTTCACATGATTAACAA
ATTACGACGCTCCATTTGGAAAATATATGTACCTGGTTCAACAATTGCCAGCGCCAAAGC
ATTCTTTTGATCAAGCGCTGTCATGTCAGGGATCGGTTCATCCATCCCCTGCCAAGCAGA
GATGAATTTGTCAGACCAATTCGATTATAAATAAGGTAATATCTGGTTGCTCGAGTCGGT
TGACATGGAAAATCACCAGCAAATCTATTTGCTCGACTCTGGGCGCGACTTCTTTAACCG
GCTCTGGTTCCGGTTCTTTCTCTGAAGTTGATACTTGAGGAGGAGGAGGTGGTGGAGTTG
ATGCTTCTTCCTCTTCTGGTTTTCTGTTGTACTCTATTGCCAGTACAGCCTGTAAACAAA
TAAAGTTGTCCTAGAAATATTAGCAAGAACGAAAATAGAAAAGACAAACAATGACAAGCA
AAGCTCATGTAGTCAACCGGAAACTCCATTTTAGCAAGATAACTGTTTCTTACTTTAGTC
TTAATATGTGGTCTTTCTAGAAGGAAAATACATTATTGACTTGTATAAGTTCCAAACCTG
ATTTTTTGAAGCAAGAGGAGCATCTCTCACATAATCTTCCATGGCTTGCAAGAATGACGC
AGGAGGCTGCATGTGTCATCGATAGGTTACCAGCAAGTTTACAAACATAAGAACAACAAT
GGAAATATACGAATAGTCCCGAGGATGCGAACCAAACCTGTTCGATTGTTAACAGCTTCT
CACCCCGCCCAATATGTATGGTTCTACACGTCTCGTAAAATCCAGAAAGTTGCCCTGCCT
GCACAACGTAAAACTGACGATAAGTATAGAGAAACAGGAACATCATTCAGCCACGTAGCC
TGCGATTTCAGGTGTTCTGGAAAACCAATTCAAACTAACAAAGTAATTAGTTGACCAAGA
ATAAGGAAAAAGTAATGGACCTGCTTGAGTGCTTTTTTGTATATATCAAGGGCCCTAATA
GCGTCGTCCCTTTGCATATCGAAGAACTGCATTGTGCAGAAGATGCCAATGGTGTAAGAG
AAACAAATAAAGCATACAAGATTACAAGATAAGCTAGTGGCCAGTACCTTGTCAACTAGA
TTGAGTATGCCATCATTGATGGCTGTCTGGATCCTAATACTCTCCGTAGCAACCTTCCAT
TTACGAGCAAAACAAAGTCAAGGGCTGATGAAATCACCATTAGATAAGACACTGTTTATA
AATGCTCTGAATGCTCACCATTGCAAGGGCATGCTGGATTATGGTGTTATAAGATGACGA
CCCATGCGGCTAAAAAATATGGATCAACGGTTAGCAATGCAGATTTAAATACCATGACAC
CTCAAAAATATTGGATCCGATTCACTTCGCAGAATAAGAACTCAATGAATCACCTGACAA
CTGATTAGCCGAAAAAGAAGCTGCGACAATGCCGGCAGTTGTGCAAGCAAACCAGTTGTA
TCAACATCTCGTGTTCCCTGTAGATAATCGTTATCAGAAATAAGATGCTAATTAAAGTGA
CCCATTGACACCCTATGAACCAAGCCAATATTTGTTTGTTTCCATCAATAAATAAACTTG
CATTGGATTACGTACCAATGGATCCAGTTCGACGTCATAATTCAGCACACGGAAAGATTC
GAGCCTCTCTTCCAAAAACAAAGCGTAATTGCGCACCCACGCGGAGTGATCCCAAGCTGC
AAATACACCATGTCAGGAGAAAGTTCTTGTTTCTTTTTGTGGAAGAGAAAGTTCAGATAC
TAATCCAAGACCAAGGTAAAGTTAGCGGCAACTAGCTAGTACCATCAGGGCTGGAGTCAT
CTTTGAAATAGGACATGTGTAGCATTTGGCCGCTAGATCTTCCGTAACTGACGAGCTCAT
CACGGAAAGAAGGGTCGACCTCGCGAAGGGCACGGTGTATCACAATTAGCGTCTTGAGTG
CAACCTGACGAATCAGAAACGAAAGTTGATCAATCATAAGCACCATTCTACCTTAGTTAC
TGAACATCACCCAGACAGTAGCAAGTTAAACAGAAATCATTTGCTTGGATAATGGAATTG
CTACATATAGACTGACAGAACCAACAGTCTGAATTTTCGGGTAAAACGACAGGGTGCAGA
ACTGCACAAACTGGATAGGTTCCATCCATGATCCATCTACTCGGACTCAATCTTATATAC
CATGAATATGAGGAAATTTATGATGGTGAGACATACCGCCCAGTTGCGCGTCTTGGAGAG
GCGTCGCGCAAGGGCGCGGATGCAGTAGGCCACGTCCGCCCGAGCCCTCCCGGAATTAAG
ATGCATGAAGATATCTGAGAAGAGGAAGCACATGATGAGAACCGTGGCGTTTTCGACAGA
AGAAAGATCATGCTCTTGCTCCTCCATGTAGAAACATGGGTTTGCTGCTACCTCTGATGT
ACTTCTCCTTTGCAGGGCGCTCCACATGGTTGGTGGCCTTGACGATGGCGATGTCCAGTT
GCTGTTGCAAAGAGCGATAACATTACAATTTTTTTTTTTAAAAAGCAATCTCTAGAAGCG
AAATTTTGGGATGAATGATGCAAGAGCGAGAGGTGGAGATGGTGATTTCTAGTGCTTGGT
AGTACCTTGTAGTCGCTGTTCACTTTGGCGATGCTGACGGTGGTGGAGTCCTTGAGGGCG
CCCACATACTTCCTGATGCTGGTGCCGCCGCCGGCCATCCTTGGTTCTGATCTGCAACGC
AGAGGAAATGGAAGGGTTCTTCAG