| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
No map location |
Predicted Genes from contig_2549253
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_37863 |
1 |
1130 bp |
MLOC_37863.1 |
Available |
Available |
LOC_Os12g43060.1, FRAME:-1, EVALUE:8e-19, 13112.m04541 protein retrotransposon protein, putative, unclassified |
| MLOC_37862 |
1 |
2618 bp |
None |
Available |
Available |
LOC_Os01g35050.4, FRAME:+3, EVALUE:5e-47, 13101.m03541 protein early-responsive to dehydration protein-related, putative, expressed |
CDS Structure of MLOC_37863
CDS Structure of MLOC_37862
Contig Sequence (3607 bp)
>contig_2549253 3607 assembly3_WGSMorex_rbca.fasta
AGTATCACGGAGGTGAACACTGAGCTACATGGGAGGAGTAGTCTCAACAATGCGTCAGTA
AGAGTAGCAGCACGAGCAAGAAAATCCTGGATATACTTTTCCTAGGATATAAAAAGGCAT
CAGAGGTAGAAGAGACTTCAATCNGAGGACGCAAGCCATAGGTAGACTGAGACGAGGAGG
ACGACACATCCGCATAGGCATCCCCATTACGTGATCGACGAGTAATGGAAGAATACTAGG
AGGAATCGCCAAGGTAGAATCGAGGGGTGGAGAGGAAGAACTCATCGGAGATGAAGGTGT
AGAATTCGGTGACATGCTAGGTGAAGAAACCATGGGAGATGGTGGTGAAGTCACCGGAGA
TGAAGGTCCAGAATCCGGTGACATGCTAGGTGAAGTCACCGGAAGGCGTCATCGCGGCTC
TCACTGCCCGTCGTGCTGCTCCAGGGGAAACTCTGATCCTCGGATCGGGCGGTGGCAGTG
CCCCGGTTTCGCATCCTTCCTGAAGGTGCCACCTTGGAGCACACGGCCTTGGAGCACACG
GTTCGTCGTATGCGGCTTCATTTCTTCGCGGTGACGTGTTCCCGATTGAGCCCCCGGTGC
TCTTGTAGTGCGAGGGATGGTGCTGCCGCACTCAGCGTCTATGTATCTTGCCTTGGGTGT
GTGCATGTGTTGTGGTGCCGGGCGTTTCTATCGAGGTGTTGTTGATCGTTCCTTTATATA
TAAAGCGGGGCGAAAGCCTTTTACGGTAAACCACTCTAGCTACCGGGCAGGTAAAGAAAA
GGTGTTGAGAAGTCTCTCTCTCAGAACAAAGCGAGCAGCTAGGGGTACCTGCCCAATTCC
TCCTTTTCATAACATCTCTAGTCAGAATAGCGTCTTGAAAGGTTTGACACAGCAATATCT
GGATTTTAAGGGGGATTTTTGATTTCCAGACCCATCTATAGTTACACCCAGCAATAATCA
TAGACAGATTTGGTTGTAAACCTTTTTTTCTTTCCCAGCCTCCACACAATCTGGTCTGGC
TCGCCAGAGAGTGCCCAGGAGCCCACCAGGTTTCTAAGATTCTCCCACTGCTCCATCAGT
GGACTGTGAAGGTCTTCTAAAGAAGTCACCATAACCCCAGCATTGAGTTGAGCGACCGTA
ACTTCCTGATTTCAAGGATATGTATCTTTCAAAGGAGGGTTATTGCTTAAGGGATCAAAC
CAAAGCCTAGCAATGTTGCCAGATTTCAAGATCACGCCTCTAGCAGCCAGATAATATTCG
TTGACTTCCATAATAGCTTCCCAAATCGGTGAGTCGCCAAATTTACACCGCACCGAGGTG
ACAGTATCTTTTTAAAAATATTTGGCTTTTATCACTTGTTGCCAAAGGCCTTGTTGAGTT
TCAAGCTTCTACCACCATTTGGTGAGAAGACTAATATTTTGCTTGAGAAGATCTTTCACC
CCCAAGCCCCCGTTTCTTTTGGATCTGCAAATACGGGTCCATTTCACCAAATGGTACCAC
TTGCGCCCCTCGTATTCCTGCCAAAAGAATCAAGTCTTGCCACATTATTTACTGGCTGTA
GAAGCCTAGAAAAGAAACAGAGAAGCCTCTCTCTCATGGAGATTGTCTCTGCTGGTGATG
ATGGTCTTGAAGCTGTACAAGACACATCCATTTTGTTCATGCTATATTGTCCAAATCGTT
AGGATGATTACGGTCTTGAAGTTTGTTAGTGTTCCTTGTTACTCGCAGTTGTTTACCATC
TAGCATAGATTTGAAGGCCTTTCCATTTACCTGGCATATTCAACAGTTTATGCCAATAAC
TCCTATTATTCTCCATTTGAAACTGTTTATATTTGCTTCTTTTGCAGAATACCAAGGACA
ATCGGTGTAGCAATTCCAATGAAGGCAACCTTTTTCATAACGTATGTAATGGTCGATGGA
TGGGCTGGGGTAGCTGGTGAAATATTGAGATTGAAGCCATTGGTTATCTTCCACTTGAAA
AACTTTTTCTTGGTCAAGACTGAGAAAGACAGAGAAGAGGCGATGGACCCCGGAAGTATT
GGTTTTGACTCGAATGAACCCCAAATACAGCTCTATTTCTTACTTGGTCTCGTCTATGCT
GTGGTGACGCCATTTTTGCTTCCATTCATATTGGTATTCTTTGTGCTCGCATACGTGGTC
TACCGCCATCAGGTAAGATTTACTGGAAGGATTATACTTTGGGATGCCTGGCACAGAATA
CTTTGATGATTCTAACTGTCTAAAACTATTTTTGAAGAAATCTTATTCAATCTTTACCAC
TGCTGGACATATGTTTGTTTTGTGCAAATAATAGTCGATCTTGGATTTACCGACCAAACT
TGCTAGAGTTATTATGAAAAATCCATACAACCATAGAACTTATGGAAAGGATATGCTGGC
GCTACGAATTCAGGAGCATGCACGAGCAAATGTGCTTCTCATAAAGGCTAAAGCCTAGTT
CAGAGTTTGGTACCATCACTGTGTACGAAGTTGAAGTATTAGAGTATTGGACTGCAGACA
ACTATGTGCGGAAACTGCTGAAGTTCAAAACAATGACAATTGCGTGCAAAACCAGCAAAG
TTACAGTGTAAGGAGCACATCCAGTGTATCCGTGAAAACCATCACTGAATCTGAATCAGC
ATGGAAAATCTCTTCCAAAAATGATGCGCTAGTCTGTGAAGCAAGCAACAAACCAGAAAT
CAGCATCGAAAATCACTTCCAAAAATGATGCGCTAGTCTGTGAAGCAATGCACGACCCTT
TGAAGAAATAGGTTATAGAATGATTGACTACTTCCTCTGTACCTAAATAATTATAGTTGG
GGAAAACTAGTCGTAGGTCTCCCCAACTACAATTATTTAGGTACAGAGGGAATACTATAT
TGGATTGAGTCAATTCATGTTTTAGGGGTGGAAATAATTTCATTAATGCAAGCACAGTCG
TATGTGCCTATACAGGAGAGAAGGAAAAAGCCACCCAACCAGACCCCTCAAATTGTCCTC
ATGTCCAGACTGTCCGCGAACCCTCATATCCAGCCCATACATTGGGGAGGATATGAGGGC
GTCCGGGCGTGTCTCGCATTGTTTATTTTTTCTTTTCTTTCTCTCTCTTCATCCCCATCA
ATCATATGCATGTGACAGGCCATGTAGCGGCCACGCCCGGACAGCTTCCTGGACGCATGT
GTGGACGTATAGGGGTCAGATTTGCCCCCAGTGTCTTACAACACACATTTGTCCACATGG
TCCGAAGTGTTACAGTATATGTAACATGGTATCTAGGCCAGTATATATACATGTACAGGT
GTGTAATATGCAGAAAACCCCTTATACAATAGGGTAATATGCAAAAAACCCCTTATACAA
TAGGGTAAATATGAAAGGTTACATGGCTGCATATATAGTACTCTAACACCCCCCTCCCCA
AACTCATGGTGGATTAACAACATTGAGTTTGGAGAGATAGTAGCCATGCTGCTCTAGTCT
GGGCCTTCGTCAGAAAATCCGTCAACTGTAACTCGGAAGGAACATACTGAAGAGCAATAA
CCTGATCCTGCACACCAGTGCGCACATAGAAAGCATCAACACCACTATGCTTGGTGAGCT
CATGCTT
