Contig Data
morexGenes
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Map Locations of contig_2549113 (6055 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_2549113

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_37790 2 1572 bp MLOC_37790.1 Available Available LOC_Os02g12810.1, FRAME:+2, EVALUE:6e-59, 13102.m01408 protein protein kinase domain containing protein, expressed





CDS Structure of MLOC_37790






Contig Sequence (6055 bp)

>contig_2549113 6055 assembly3_WGSMorex_rbca.fasta
ACAAATATTTTCGGACGGAGGTAGTATATAGGCTTGTTGGTGACACAGTGATCTGCTTGG
GTGATACCGAGTTGTTTAATGAACATTTGGGTATTCTTAGCTAGGAGTCAAAATGGGATG
CTGCACTTGCATTAAATGAGCATAACTATAATGAGAAGGTGCAGACGAAATGGAGGCTAA
GATTAATGCTTCAGAGTTTAGTCTGAATATAGCCAAGCAGTATTTTTGCTAGGTTGCTGT
TTAAGAACTTATGAAACAATATCAGAGGGATGCAGCACCTAAAATATTTAGGGTTTGTTA
TCTTGGAGCAAGAGATGCACTGGTCATCTTGTATGTACCTTTATACTATTATTAAATGCG
CAAATTGTTGGTTATATAGTCGAGCTGAAGTTGGTTTAACTGAAACTTAGCAGTACGGTA
CTGAACAACCGCAGAGTAATAACAGTTTTATTGCAGGAATTAATGTCTATCCTATCCTTC
CTTTATTGACAGAGTACATATGTATTTTACCATGCAGGTGTCAGATTTTGGGATGTCAAG
GTTGAAGCATAACACTTTTCTTTCCTCCAAGTCGACAGCTGGAACAGTAATATCCTTGAT
CTTTTTATTTATTCTTTTGTTTTGTTATGTTTGGCTCTTGTGCGATACTCCGTTCATCTA
GAATCATTTCCTGATTCATTGGTTCTGTCTGACAAATGGCATATTGCCTCCTACATTTTC
CTTGTTCTGCTGGTGTGTATCTTCTGTAAATAACTTATCGTGACTGTATTTCCTGTTGGC
CTACAGCCGGAGTGGATGGCACCAGAGGTCCTGCGTAATGAGCCAGCTAATGAGATGTGA
GTTCATTAGTTTTCCTAAGTCACGTTGCTCTTCTCCTGTTCCTGCCATGCTTTTGTGCTG
ATAGAAAATTGAATGCTGGCATCAGGTGTGATGTCTACAGTTTTGGAGTAATCCTATGGG
AATTAGCAACGCTGTGTGTACCTTGGAGCGGGCTGAATCCAATGCAAGTCGTTGGAGCAG
TTGGGTTCCAGAACAAACGACTAGACATTCCCAAAGAGGTTGATCCACTGGTGGCTAGCA
TAATATCTTCATGCTGGGACAAGTAAGATGACAGATCATTTTTCAAATAATATGTCCATT
TTTCTCAATTTTTATTCTCTCTTTTTATCTGCTACTTGCCTCACTGACAGTGACCTCAAC
GATCTTTGGTGCAGCGATCCAAGCAAACGACCATCGTTCTCCCAGCTCTTGTCACCTCTA
AAGAAATTACAGCGGTTACTTGTTACAGAAAGCCTCTGACAATTTGTGAGACAAATATCT
GGATAAACGGAAAAAAGAAGAAAAATATAAGTATTTATGCTACTAAGTGGACCAAGTTTT
TCATGTTGAAGCCCGTGGAGATGTATTCAAGATCTCTGGAGTATGGATGCGTATGGACAA
AGGTTCTGCACATCCTTTTGTGAAAATTGTGAGAACTATCTGCAGCAGCACGAAGGTGGT
GCTGACGAAAGCGTAGTGTGTTAGTTCCAAGTGAAGAAAATGTGGTGCAACACGAAGTGC
TCTGTGCCATGGTAAATAATTGTTCAGTTCTGTATTTGGAGCGGGGTGGGGGTGATTCTG
AGAATCAGAATTCACCACAAAGATAGGGTCTTAATTTTTGTTGGTTTAAAACAGAAAATG
GAAAGAAAAAAAGGAAGCCAAAAGTTTTTTATGTCTGCAAAAAGTGCAGGCTTATATTTA
TCACATGCTGTCTTGTATATCATGTATGCAGATGTTACTTGGCATCTCAATCTCTATGAA
TGCATATTAATACTTTCAGTTATCTCTTTGATAAAATGCACTCTATTTTATCACATTTTG
ACAATGGGATAGTCATATTCCATGCCTTCTTTTGGTGTCATGATGTATTGATGTGTGATA
ATATAGTCCCTAGGCTCATTTTTTTTTCTTCCAATCAGAGGTGACATTATATTTGTGGAG
AAAAGTAAGCAATCAGAATTGTCATGTTTTCCTGTGCCTCTAGATTGCTTTGTTTAATAT
CAGTTTTAAACCTGGATTTCCTGCACTTCATTATTTTCTTGGAAAAGATAACTTGGGAAC
GTTCCCTGGTAGGGAGGTTCTAGGTACAAAGCCGAAAAGATAACTTGGAAACGTTCCCTG
GTAGGGAGGTTCAACATGGCGATTCTACAAGCCATCAGAGTTTTTTGACATAAGTGGAGT
ACATACGAGACACCTGGAACTGGAAATAAAATAAAACGACATATGGCCTCACCTGACACC
AGAATAAGAAGCAGCGCCTAGAAACCGCATAGGGTGCGTTTGGTTGTCCGCTTAAGGCCC
AACCAGACCCGTACGAAAAGAAACATATTGATTGATTGCGAGCATACATTATTGGATCTG
CATCGCATGAACTTTAAAACATCTTTGGGCCTGGCTCTCGAGCCATGCTTGAATCGGCAG
TTTCTTATACCCAAGCCTGTGCGAGGCATGTGAGTGATGGAGGTTTCACGTAAGGAGCCA
CCCTCAAAAAGCCACGTTGTTTTCCGAAACGTTGATATTTATTACGTCCTGATCAGCTGC
GGTGGCGAGGCTACAATGGACCACGAGGTGGTTACGGCTGCTGCAACAGGGGAGGACTGC
CTAGCCCCAGTCAACACCGTAGATTTTTAGTTTCCAATGTTAGCACATAGATTGTATCCC
CTAATAGTACTAGTAGTATGTGTAGCTGGTTCCATTCCTGCCGCTCCACGGACGAGTGTG
GTTCCCTAGCACGATTTTTAGTTTCCAATGTTAGCACATAGATTGTATCCCCTAATAGTA
CTAGTAGTATGTGTAGCTGGTTCCATTCCTGCTGCTCCACGGACGAGTGTGGTTCCCTAG
CAACCCGTGTGATCCTTGTTGTTCGCCGTTGTCGTTGCTTAATGAAGGGTGTATCACCCC
AGTTTCCTCAACACTCCTGTGTGCTCCTCAAGCAGCCTCAATCAACTGCACGCGCGCATT
GATCGCACACTACTGTGGCCTTCCGTTGTTACACATGCATGATGGCCTACGACATCTTAC
TTGCTCCATGCGGCCTTGTTGCGAGAAGAACCCCAGTTTCCAGGTGATAGCTACAACAGT
TAACTTCTTGTGCTGGAACGTGAGAGGGTTGAATGACCCAAATAGCCACCCGACGGTGCG
CGAGACAATCACCTCCACCTCATGCCACCTGGTTTGCCTACAAGAGACCAAGATGGAGAA
CGTTGACCAGTACGTCGCCACATACCTTGGCGGAAACAGACTCCGAGGCTTTGCTCAACG
GCCGACAACTGGGTGAAGAGGGGGCATCCTAATGCTTTGGGATGACAGTGTCGTTCGCAT
ATCCGATGTTCACGCAACTGAGTTCTGCCTCTCGGCAACAGTAAATTTCATCAACCCAGA
ATCCACTTTCAAAATCACCACTGTCTATGGCCCAATGGCCTCCACCAAAAAGGATGAATT
CTTTAGCGAGTTGATCTCTCAAAAGCCAAGCAGTGGTACCAAGTGGATCGCCATGGGAGA
TTTCAACCAAATTTATAGAGCTCGAGATAAAAACAATAGGAACATCAACAGCTCCCGTCT
AAACTGCTTCCGTGCCATGCTTGACACTTGTGAGCTAAAGGAGATCCATCTGCAGAATAG
GCGCTTCACTTGGAGCAACGAGCGTCAAAATCCAACATTGTGCAAGCTGGACTCGATCTT
CTGCAACACAGACTGGGACATACAGTTTGACTCCCCCGTCCTGCACGCTGTCTCCTCGTT
GCTATCGGATCATTGCCCTCTCCTCCTTGCTGATGCCAAGGGGCCGAAGCGACCGAGATG
CTTCAAATTCGAGAACTTCTGGTCCTGCCTCCCAGGATTCCTTGACACTGTATCCATGGC
TTGGGGAGGACCATGCCCCCACTCGGAGCCCTGCCAACGACTTTTCCATAGACAACGGGG
CGACTCTTGTCTAAATGGAGCGGAAGGATCTTCTCTAAGGCAAAGCTACACCTTCATGCA
GCCCTCCTCGTCATCCTACGTCTAGACATCGCCCAAGAGACGCGCACCCTCTTCGTGGCG
GAGAGGGACCTTCGAACTCGCCTCAAATGTCGGGTTATCAACCTGGCCGGGACGGAGCGG
GCGCGGAAGAAGCAATGCGCCCTCATTGCGAACATCAAAGAAGGTGACGCAAACACCAAA
TTCTTCCACCTCAGAATCAATGCGAGACGAAGAAAGAACCACATCCACAGGCTAAAGAAG
AGTCCTGGATGGACCACGAACCACCAACAAAAAGAGAAACTCATCCACGAGCACTTTCAG
AGCACTCTAGGAGGGGGTCAGCCCAGACTGAGAGACCTGAACTGGGAGAACCTAAACTTA
AGGACAGTTGATCTCACTAGTATTGATGGCAACATCGCCGAAGATGAAGTTAAGGCCGCC
ATTGATCTTATGCCGGGCGACAAGGCCCCTGGGCCAGACGGATTCACAGGAATCTTCTTC
AAGAAATGTTGGCATATTATCAAAGACGACATAATGACAGTTATTCACCAGTTCAATTGC
CTCCAAACGACGAACCTACACTGGCTAAACCCGACCAACATAGTGCTCATCCCGAAGAAG
GATGGGGCGGATGAGATCGTGGGCTTCCGTCCCATTAGTCTCATTCATGCTATTGCTAAG
ATCATCTCCAAGGTGTTGGCTAGACGTCTTGGCCCTTTCATGAACAACCTAGTCTCAAGT
GCGCAGAGTGCCTTCATCAAGAAGCGGAGCATCCACGACAACTTTATGTATGTCAGAAAC
CTCGTGCGACGCCTTCACAGGAACAAAACTCCATCCTTGCTATTCAAGTTGGACATTCGG
AAGGCATTTGATTCCGTGCGATGGGAATACGTTCTCGACCTCCTAAGGAGGCTGGGCTTC
CCGGATCGCTTTCGGGAATGGGTGGCCGTACTACTCTGCACCTCTCTTCGCGTGTCCTCC
TCAACGACATTGTTGGGCCTGCGATCTTTCACGGTCAAGGGCTCAGACAAGGGGACCCCC
TATTCCCCCTGCTCTTTGTCATAGCAATCGATCCCTTGCAACAACTCCTTGACGTGTCCA
CAAGTCACAACCTGCTCCATAAGATTCGAGGGCCCGGTTCTTCTGTTCGCACATCGCTGT
ATGCTGACGATGCCCATCTTCATCTCCCCGACGAAAGAAGACGTTGCCAACCTTGCGACC
ATCCTGACTGCTTTTGGTGAGGTCACAAGGTTATCTACTAACTTCCAGAAGAGCTCAGTT
GTCGCAATTAGATGTGTTCACCTCAACCTTGATGACATCCTTCAGAGCCTGCGTGCCTCT
CGATCATATTTCCCTTTGAAGTACCTTGGCCTACCTCTATCCATCTGGCAGCTGAAAAGG
GTAGACTTCCAGCACCTAGAGGACAAGGTCGCGGCGAAGCTTCCCCCATGGCAAGGGCTA
ATCATCACCATGGCTGGCCGGACCGCCTTAGCTAAATCGGTCCTCATGTCGCAAGTGGTC
TACCACATCACAACCATCAGTGCCCCCTGGAGTTGTGCACAACGTCAACAAAATCGAACG
TGCTTTCCTATGGTCCGCTAAAAGCAAAACCCCACGTGCAAAACGTAAAGTCAACTCAGA
GATGGTATGTCGACCCACACACTTCGGCGGGCTGGGAATCATGCACTTGGGGAAATTTGC
AAGAGCCCTCAGGCTTCGATGGCCCTGGATGGAATGGAAGGATCCATCTAGATTGTGGGT
GGGATTGGCAAATCCATGGTCAAAGGTGGATATGGATCTCTTCTATGCATCCACCCTCAT
TACCATAGGGGATGAAGGGAAGACACCCTTCTGGGAGGCGCCTTGCTTGAGGGGGAAAAC
CGATGGATATCGCTTTTGGTGAACGTTGCATGGGAAACNNNNAATTTCCTACGCACACGA
AGACCCACTACTGGAAAAAGGAAATTTGCCATGGGCCTAGTCTTTGCCGTCCGCCCCCTG
TCGGCAAAGAAGATATTTGCCGTCAGCTTACAAGTGGCAGACGGCAAAGAGAAGG