morexGenes - Barley RNA-seq Database

Contig contig_2549082
Source Contig contig_2549082
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2549082 (5818 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_2549082

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37774	3	1934 bp	MLOC_37774.2	Available	Available	LOC_Os12g05420.1, FRAME:+2, EVALUE:0.0, 13112.m00546 protein calmodulin-binding protein, putative, expressed
CDS Structure of MLOC_37774

Contig Sequence (5818 bp)

>contig_2549082 5818 assembly3_WGSMorex_rbca.fasta
ATCCCTAATAAGCCGGGCTATCACAATTATGCACAATATGATTGTAGAAGATGAGCGCAC
GGAACGTATCTATGATCAAGGGTTTCAGTTTCAGGGTGAGAATGTTGTGCTTGAGCATGA
AGGAGCGGCAACATTTAAACAGTTTACTCAATTTCATCATGAAATGTGTGATTGAAAAAC
TCATATGCAGCTGCAAAATGATTTGGTTGAGCATGTGTGGACTCATGTTGGCAACCAATA
AATGTATTTTTTTCACATGTATTTGAGATAATTTATTTTTTATTCGGCTTGTCAAATATG
CTTAATTTACTTGGTTGTAAAACTATGTTTTATTTGGTTGTGAAATATGCTAAAAAAAAT
TATGCCTGTTTGTTAAATAATGCAAAATATGTGCATATTTATTAAAAAGGACGGTCAGAC
GGCCACGTCGGTAAATATGGGTCAACGCGATGCACCGCCGATCAAAATATGAAACAGAGC
TGTTGCCGAATGAGCGGTTGATCCAAACGGATAAAAAACAGACAAAAACGTAGTCCGTTT
TGATATGAAATGATGACTCGATATCTTGAAGATATTTTTTCTTTCTTTTTGCGGGCATAT
CTTGAAGATATTGATAGAGATAAAATGTGACGTAATAAAAAGGTCAAAACATGAAATTTT
GCCTACCCCTCAAGACAAAACGCACAGCCCGGGTAGACGACCCAGCGTACTCGCCAGCTG
GACCATGACCTCAGCTCATTCATAACAGTAATCTACTCCACTCTCCGATTATCTCATCTC
TCGTGTCATCTACTGTAGCAGCAGCAGCGCAGGCGGGCATAAATTCCAGCTGCTGCCTCC
CCCTTCTTCCCTCCCCACCCCGCTCTCCCCCTCCTCCTCGAGAAGAGCACGACCATCCCC
CAACCCGCCCGACTCCAGAAGGCCACGACCATTATCTTGGCAGCAGATGGAGGTGGAGAC
CGCGATGCCTCCTCCGGCGGCCGCTGCCTCGCGGGAGCCGAGCCACACGGAGGAGCTCTC
CTCCTCGCCGTCGCCGGCGACCGGAGGCGGCGCGAATGGCGCGGCCACCAAGGTGCAGAA
GGTCTACCGGAGCTACCGGACCAGGCGCAAGCTCGCCGACTCCGCCGTCGTCGTCGAGGA
GCTCTGGTAACCAGATCCTACCTACTGTACTATCTACAGTACTCTTCTTCACACAAAAAA
AGGAAACCATTACTGCTCCGCTTCTTTCCTTCCACTTGGCCGGCCTGATAATTCCGGCAA
AAACAACGGAAAATCGCCCAAACCCGCCCGATTTCCTCAGGATTCCGCGCTTCTTGCCGC
CCTTTTCTTGTTCTTGGTTCTCGCCCTCCCGCGACCCTGATTTTGGTCCTTGTCGGCAAT
ACTGCCTGATTCGTTCTGTGCCTTGATGGCTACGTGCGCTGAAAATTCACCTTTTTTGTT
TTTTTTTCCTGGTTTGGATTGAGCAAGGTGGCAAGCGCTGGACTTCGCGCGGCTCAACCA
CAGCACCGTCTCCTTCTACGACGACCCGGAGCCGGAGACCGCCGCCTCGCGCTGGAACCG
CGTCAGCCTCAACGCATCCAAGGTCCTCTTGATACATTCCCTTCCCCTGCACCATCAGTC
GCCGGCACAAGGCAGCAGCTCACCATGATGGCCTTTTCCCCACAAGAAAGCCATTCTTTT
TTTTTTACTGGAATTATCCTTAGATTCAACTCCACCTCATGTTCATGAGCATGTTGCAGG
TGGGGCAGGGTTTATCCAAGGACGCCAAGGCTCTCAAGCTGGCTTTCCAGCACTGGATCG
AGGCTGTGAGTACAAAAAATCCCACACATCCACTACTTTTTTAATGCTAAGTAGTAGTAT
TGTACTTGCTGCCTTTCTATGCTCTCCAAATGTGTGTGTGTGAAAAGAATAAGCTTCCCA
GTGTCAGTTGACTCGGACTGTCAGTTGTCTGTGAACATCGATGATAAGAAGTTCCATAGC
TTGCCCTCGTCTTGACTTGGACTTCTATTTGCAAAATTTTGACATCCATCTGTCATATTC
TTGTAGATTGATCCAAGGCACAGGTACGGGCATAACCTGCATTTCTACTATGATGTCTGG
TGCCAGACCCAGGCTGGCCAGCCCTTCTTCTACTGGTAAGATCATGACTGCCGAAAACCT
TGCTGTCCAAATGAAATCATGCAAATGAATATGTAGTTCCCATTTTCCTACAAGGTAAGC
CTCATATATTTTGCACGGAAATTGATAGTCTTTTGCTCTTTTTCTTTTTTGCATATGCAG
GCTTGATATTGGTGAGGGAAAAGATGTAGATCTTCTAGAGTGTCCAAGGGCTCGGCTTAA
GAAGCAATGCATAAGATATCTTGGTCCAGTAAGATCATTTGCATAATGGATACTATCTTT
ACCCTTTCTTGCTGAAAATATTCCAATGAGAGCTGCATTGGAACTTCACAGTGCAAAATT
CATTCAATGCTTAAGTTTCTTCAGCAAGCCTCGGTTGTGATTAAGAAATACCACAAACTT
TGTGTTTCTCATGTTCACCTTCTAGAATATGTTTTTCTCATAATGAGAACATTGGTTATG
TTGGCATGGGTGCCGAATCTAGAGACAACAGTGAAGGGCAGGCACCATGCTAAGCGCTGT
CACATGCAGGAGTCACTATTGAACCTAACAATAACATGATCAATTGATAAAGGAGTTAAG
ATTTGTTAGGAAAGAGATAGATTAGGAAGATGTTGATATGGTTTTCTGGGAATAATATTT
AGTTAGGCAAGAGATAGCTTATTTAGTTGATAAGGATATCTCAGCTGTCAAGTCAAAACT
AAGCCAAAGAGCCTGCCTAATTTCGACAGCGATTAGGCCCTGCTGGCATCTACATGAGGG
CGAGTGCCCTATCCTCGGTCCCTGTACTTTTTGCGGTGCGCTGCACGTGACATATCTGAA
TGCTATCGTAAATAAATCAATAGCCCAGAATTATAAGGCACACACACACTTCTCAAATTT
ACTGACCTATGTGGATTATGTTATACAAAATCGATATCTTGGATTCATACTAAGTGTACT
TTTCAATAGAATTAATTTGTATGAGATAATCCACATAGTTGAGCAAATCGTTGGTCAAAG
AAGTTTCAGAAGTCTTGAGTTATGTTTAATACTATATCAATATATATGAGGTTATGGAAC
TCCCTAGCATGTGCCATTAGTACTTCTCATCAATTTTTCACTTTAACCACAGCAAACCCA
ACATGTTGAGATTAGTCGTAACAAATTGCCGCATGAAAGTTTAGAAGAAAATTGTTGAAC
ATGAACTCTGTAACAGCTGTCTGGTGTTTTTGCAGCAAGAGCGTGAGTACTATGAATACA
TCATTAAAGAAGGAAAGATTATCCACAATATATCTGGAGAGGCACTTGATACGAGCCAGG
GCCCTAAAGGGACAAAATGGATTTTTGTTATGAGCACAGCAAAGAAACTTTATGCTGGCC
AGGTAGTTTGATAACTCACAGAATTTTAGCACTGTTAAGTCATGTTTTGGAAGGTTAGCT
TCACTGAATGTTTAACTTGCATGCTTATTTCTATATCCAGAAAGAGAGAGGTGTATTCCA
GCACTCCAGCTTTTTAGCAGGAGGTGCTACTATAGCTGCTGGAAGGTTTACTGCAGAAAA
TGGAGTTATCAAGGTATTATTGAGAGTCACCATCGTATCTAAGTGCTGCTATTTTACGCA
AAGATTTTACACTTGATGAATTGTTGCTTAAATATTGTATACATATCCCAAAAGATTTAC
TAGTCATTTCATACTGATGATTTTGTTCTTGTGCTTTCTCTTCCCATTATGCTTGGATGC
ATTATGCTAATCTATGCTTTGATGATCTCTTCCCATTTCAGTCCATCTGGGCTTATAGTG
GACATTACAAACCGAGTGCGGAGAATCTTAGCAACTTCATGAGTTTTCTAGAAGAGAATG
GAGTTGATCTGAAAGAAGTTGAGGTATACTGTTTCCGGTCCAGCTGAATCTAAACAGGCT
CCTATGTTACCAAATGTAAGATGATGCACTTAATCAACTTATTTCTTACATATTCAGGTG
CGCTCATCCACCAAGGAAGACTATTATGAAGACCCATCGCTTAATAGCAAACAGAACCCT
GCTGCTGCTATCATGCCATCCAATCCTCCGCAGTTGATTCTCCCTTCCAACATGGTGGAA
GAAGGCAAGGCATCTGGGCCATCTTCTCAGACTGAAGCTGACGAGGGTGATAATCTCCGT
ATGGAGAAAGCAAGGCCAGCCTACCAAAGAACCTTATCAGGTGGCCTGCAAAGCCCTAGA
GATGCCGGCGTCTCGCAGGATGCAATTCTTGAGAGGGTGAACTCCAAGAGCAAGTCAAAA
TCCTATCAGCTCGGCCACAGGCTATCCCTGAAATGGAGCACTGGAAATGGTCCAAGGATT
GGGTGTGTGAAGGATTATCCAATAGAGCTCAGAATGCAAGCGCTGGAGATGGTACAGCTC
TCGCCAAGAGCATCGACTCCTCCAGCCTCGTGGAGGGTGTCGTCATGCCTCTCCCCCACC
TCGCCAACCTCGCCGCTCGTGACAATACAGGCCTCCCTGCCCCAGCCAAGTTAGGAACTT
GAGTCTAGGCAATAGCTGTGTAGTTCTGCTGCTTCATGTTTGATGGGTGCTGCAAAGGTC
AAAGTTTGTGCTTGCTGTATTTCCTGTGTTCCTTGAATCCATTCGTAGCTCAGATGGATC
TGGTCAGGATTGTATGAGTTCGAATTTGGTTGAATCGAATTGAGAATGTGTGATTGCGCT
TGCGCCTTTTCCCACCAAATGTCACTATTGCAGAAATAGCTTCAGCAGAGTTTTCTGTTT
CATATGTCATAATACGGTACTGTAGTATGTTTGCTTATGACAATAAGAGAACATTTAAGG
ACAAAACCTACAAACCATGATCAAATTTAAGGATCAAAGATCAGCGAGTTAAAATTGCTG
CAAAAGATAAGTGTTCCGTTATGTTTGGGAAGAAGTGTAGTTTGGAAGATTAGGTGTCCA
TCCTGGTAATTCTTAAAATGGTGGTTGATGGATTTGAGGACAAATATCAAGTCAGTTTTA
GGCTCTTCCGGTATATGCCATGGGTGTCTTCAAATTTCCGGCATCTCTTTATGAGAAATT
ATACTAGCTTACCAGGTATTTTTGGTGAGGCGATGAGGCAGATAGGAGGAAAACTCATTA
GCTGGCTTGGGACAAGCTGACGAGACCCAAAGACAAAGGGGGTATGGGATTTCATGATCT
CATATTATTTAATCAAACACTTTTGGTTAAACAAATTTGGCGGTTATTGGTTTTCTCACT
ATATGCAAAGGTGATGAAGACAAAATATTATCCTCATGGGCATCTCCTGGATACGGTCTT
CCGGCAAGCAACGACCATGACTTGGTAAGGTATTATGCATGGCGTTGAGCTGCTTAAAAA
TGGTGTCATTTGGAGAGTTTTTTATGGTGCTAGTATAAATATTTGAAAAGATAATTGGCT
TCCCAGAGATTATGTCCTAAATTTTGCTATGTAGAAGAAACAGAACTAGGCTTAAATGGG
TGTCTGGGTTATTCATGTGCGGTTCTAGGAGACGGGACGAGAATTTGATTAGGCATGTGC
TTTATCACCATGATGTTGAGGAAATTTTAAAGTTGTGTATTCAGTTTGTGGGAGAGGGAG
ATTTTATTACTTGCCACCACGAGAAAAATAATTTGTTCTTGGTTAAGAGTGTCCATAGAC
TAGCGTTGAAACTCAAGGACCATAAGCAAGGACGATTCTAGGGGGGGGGGGGGGGGGG