morexGenes - Barley RNA-seq Database

Contig contig_2548871

Source Contig contig_2548871

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2548871 (2575 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2548871

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37682	1	743 bp	MLOC_37682.1	Available	Available	None

CDS Structure of MLOC_37682

Contig Sequence (2575 bp)

>contig_2548871 2575 assembly3_WGSMorex_rbca.fasta
GTGAGATGCGCCCCCTCCTCAGGACGACAATGGGTAAGCCGGGGAGGAGGGTTATTAAAT
ATAAACGAAACGTTTTTTTTTATAACTTAAAAACGTACAGCGGGTTGAATCTGGAAACGC
GAGGGGTGTTTTTGCAAAAAAGCCAGCGACGTATGACAGAAGGGCTGCACGCTTTATTAT
TAAGGGAGATAAGATACGTACACTGTACGTGGACGCTTACTAGCGAGAAAAAAAGAAGAC
CTACGATGGAATACGGTACTCCCTCCGGTCCTTTTTACTTTGCAAAGTTTGACCAAATTT
ATATTAAAAAATATAATATCTACAATATCAAATATATACACTATGAAACTACATTTCATA
AAGAATCTAACAATATTGGTTTGACATGATGAATATTGATAATTTTTTGTATAAGTTTAG
TCAAAGTAGAGATGTTTTGACTTCGAACAAAACTTATATGAAAACTAAAAAAAGACGGAA
GGGAGTACAAAACAGTAGGTCTTGCGTGGACCCAAACCGTATGAGAGCGACGGCGGTCGC
GCACGAGAACTCTGGTCCGTGGACTATCGTGAGAAGCCGATCCGAGCCAGGGATGAGATA
AGGTGTACTTGACGGCGGTGGACGTCTGCGCCGTTTGTCGATCATTCTGAAACCCAAGCC
GTCCCTCTTTTCCCCGCACACCACGCTGTTCCCGTTGTGAGAAGGCGCTTGCGGCGGCGC
TCGTTTTACACTGGCGGCGACGCGAAATAATGGAGGATTCTGGGCTGGAGCTCTTGCTCG
ATGCCGTATTAGTTCGAGCAGATCTGCAAACAAGGTTTTCTAGGATTTGTTGTGCTGCCT
GTCCTAAACTCCTAATTGTAGAAGAAACCTAATGAAAGGACCTTGGTGTCCGCCATTTCC
GTCTTCTTGCAGGTGGAGTTCGCCGACAACCTTGAGCACCTAGATCCGGTTCCTCTGGTC
TTGTTGCCCAACAACGGAGCGGGCCTTGCCGTTCCTGAAGACTCGAATGCTGGGTCTGGC
TGTCAGGCTGTGCTCAGCAGCTTTTGGGCGATGGGACTGTTAGAGAACGAGTTTGGGTCC
GCCGCCGTCCGGATGGCTCTCCGACGAGGTCGGTGCAGTCGACTGACAGAGTCAATCCAG
AAGCACCTGGCTGGACAAAAACTTATGCACCCCTACTCCTCCAAACTATCCTCCTGTAAC
TTGTTGAACTGTGGCTGCATCTTCGTCTCCGCTCCGCAGCGTTTATAAGAAAAAAAGATG
GGTTACTTTTGCTGAAAATCGTTGGTAGAAAAAAAGGACCATCACAAAAAGTAAGCCTCG
AATTCTAGCTCATCCTAATTTGATAGTCAGAACGACGTTCTTCATGCTGTTTAAAAACTT
GTTGCAGTACATCTAATAGACCGAATATTGTTCCTGTATTAAAAATCGTAGACTAAAAAA
ACAAACTGTTTGGCTAAAAACAGGTTACGGCTAAGCAGTGCACGACCCTCTTCCATGTCC
TATCACATGCTCCCTCCGTTCCTAAATATAAGTCTTTTTAGACATTTCACTAAGCGACTA
CATACAAAGCCAAAAAAATGAATCTATACTTTAAAATATGTCTATAAACATCCGTATGTA
GTTTTGTAGTGAAACCTTTAAAAAGATTTATGTTTAGAAACGGAGGAAGTAAGAGCTTGT
GCCACTTCTTTCATGACACACGTTTGTTTACACGATTCACCTACGACAAAAAAAACTATA
ATATGACACGGTGGAGCTATGAGGAGGAGGAATTTGTCGATAGAGCGTCACGCAAGTAAA
ATTTACACTAGGCTATATTTGAGGAGTTTGGGCGCCTCCTGATCCAAGGGAGATGAAGTT
TCAGTCGGGACTTCGAGTGAAAAGTTTGCCAACCGAGTGAAAAGATTGCCAGCCGAGTGA
AAAGACGTCGCACAAATATAAAGCTTGTTGGCCAGGTGAAATCCTATTATTAGGCTGAAG
AGATATGATTATGCGATCCGAGTGAAGAATCCTAACATCCGATTGAAAAGGTTTGAATCC
GACTGACGTTGGCCAATATCCAATCGAAAGCTGAAAGATAGGTGCAAAGAGTTGTCTATA
TGTCTTTATATGGAAAAGTGTTTAACATTAAAGTTGTGTGTATCATCAAGCCGGTTAACT
TTGATTTCGGAGTCATGTGAGATGGTATACAACCTGTAAAAACATACAACAATTGGATAG
TACAGTCAACCGAGTGGCCAAATTTGACAAAGATTATAATATGACCCCGTTGCATATTCA
AGTTAACCTTATTTGGAAAAGTGATCAATATAAGAGTTGTCCGTATCGTCAAGACGGTCG
ATTTTGATTCATAAATCGTCTCAGGATGTTGTATGCAGATTCTGTGGCCCGCGCAAGGAG
CAAGACACGAGTTTTGGCCAGATTCGGGTTGAATCCGAGTTAGACTAGAATTAGGACTCT
AGGACGTGATTTGCTGTAATTTCCTTGTAAGGAAAGCCTAGATGAATCCTTTGCTTGTAC
GGGAAGTTCAGCCGCCTCTTATATATATTGGAGGTGATGGCCAATTGAAACAACA