morexGenes - Barley RNA-seq Database

Contig contig_2548837
Source Contig contig_2548837
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2548837 (7747 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2548837

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37664	1	1140 bp	AK361109	Available	Available	None
MLOC_37663	2	2349 bp	MLOC_37663.2	Available	Available	LOC_Os02g05730.1, FRAME:-1, EVALUE:0.0, 13102.m00631 protein protein kinase domain containing protein, expressed
CDS Structure of MLOC_37664

CDS Structure of MLOC_37663

Contig Sequence (7747 bp)

>contig_2548837 7747 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGATACAACGTTTTCGGAAGTGTTTTTTTTCAGCTTCACTGCA
TGACTGGATACAAATGGCAAAAGTAAGCATCTAGTCAGTGCATGTGATGAAGAGAGTTAC
ATGTGTCTCCCAAACTATATCATTAGTTTTCTGAAAGTATATTTTGGTGAACGGTGAAGA
AAAATGAGGAAGCACATAGTATCATATATCCAGAGTTTCTATATGGAGATACAGACAGTT
ATTTCTTTTTCCTGAAAACATGGAGACACAGACAATTTAAGAAATGTATTGTCATCCATC
GGGAAGTTCAAGAGAGTTTCTCTGTACTATCGTGTAAATTGTTTCAGGTATTGTTCAGTA
ATTCTCTCCCTGTGTAAACTAGCTAATCATCTTAAGAATATAGTACACGCATTTCTTTTT
TGGAAATTTCCAAATGTCTGGGAATTATGTGCATGTAATAATTTAGCTTATACAAACCTT
CGTGTTTTAATAACAAGTACACTAGTTCCTGTATATACTGAAAAAGGCGGGTGGGGAAAA
TATCACAAATGCCTTTGAGTAGTGTAAAAAAAGCAGTAGCATGTTAAAATCCTACAGTAA
GAAATGATGATGAGAAGTAAGAACCTACAGATACTGGAGTGCTTTGAGATCTCTAAAATT
AGTAGAGATGGCACCAACTAACCCAAAGGAAGACAAGTTTCTGCAAAAAAGTAAACCCAG
AACAGTTAGCTTCTCTTGTTCATTGGTCCTAAACATTTCTTAGAAATGTCAAGATATTCT
GCGTATGAGAATGCATTTTCCTTTATTTCATCCAAACATAGTTATGAAACTTACAGTCCC
ATTATTTCAGAGGGACTTGCTGGTGGATATGAGCAGTTTAATCCTCTCCACACAAAAGCT
TTCGGTGTACATGGATCACCCATCCAGTTTTTTACGACACCAAAATTGTCTTGGGTTGCC
ATCATAGCTCTAGCTGCTTTGCAAGAACAAGGAAGATGGTTAATTACACGAACAGATAAG
CAGGCAAGCTCTAAGATACTAATACACCTCAAATGTGATAAAGGACAGTCTAATACAACC
CTCTCTACTGCTAAGAAAAACTTCTACTTCTCAACCCTGAACTTACACCACAGCCATGAA
CAAACAGATACTACAAGAATAAACAATCTAAAACAGCTCCACCATTTGGATAAAAGAAAT
TTTCACAAAAAAAAGCTAAAAACAGAAGAAAATATGGTACAGACAGATCAATAAATGGAA
CTTGGTGACATGGCAACGGCATGGCAGTAATGTAGTGGACATGTGGCATGCACATCACAC
TAAATCGCTAGTGAGACTACACAAGGTGGAAAAAAGTGGTGGTTTTAATAGTTTGTGGTT
CTCAATCGAGACGTTTTAGAATTCAGGGTTGAAAAGTGAACTTTTGCCAACGTCCAGAGT
TGGAAAGTGGACTTTTTTCTATTGCAGATTAGACAAGACCCTTTACATAGTAACTGTAGC
TGGTTATACCCTCTGTAATCCATACTAATATTGCATCAGTAAATTCATACCGTCTCCAGG
ATCAGTTGCAACCGGAGTTACCAGTTTCACCAAGTACATCTCCATGGCATTGAGGATAGG
TGGAAGTGTTGCATTTTTTGTAGAAACAAGTGAGACACTATAATTTTCCATCCCTTGCAC
AACACCGGAAAAATAATTGGCAAATAGGAATGTTGGGGTGTAAGGTCGCCCGTTCCATGT
CTTGTTATTGACAATGATATCAAACTGCCTCACCGCTTTGCTCGGTACATGCTGCAGCTC
AGCAAAGTAGAAAATAAAGAAGTATTTGGAGTTTATGTTCGCCGATGGATCAGATGGATT
CCATGAGAAATCAATTCTTGAGCTATTAACAGTCGCTGCATTTTGCATAACAGATGATGG
CACATTGTACACATCCCTGAGGTTATTATGCATTGGAGATGTTGCAGATATCTTAGTACA
GTTCGGAATCGCATTATATGTAGTCCAGATGCGATCTTGGGGATCCGAGGGGTACCTGTA
GACCAATGAAGTATATGGTTTATGTAGTATTGTAGTCCACTGGATTAACTAGAGTCAAAA
CAACCATTTCTCTGTCAAATTAAAAGTATACCTTGCAGACAAAACTTATGCAGTATAAGG
CTAAAAGCAGCGGTTACAGCCTACAGTCATTTATAAATATATTTTTCCGCAAGATATCAG
CCACCAAAATTTTACTTATGTTGATCAAGATGGCGGTAACGCGGATTTATGTTAAAATTC
GATAACAACAATTCTAAGTCGAAAACTAACCTGATTATTGAATTTTCTGTGGGCCCCGTG
TGGAACCGATTAGAATTAACCAGCACGAGCAATTGACTTGCATTTACCTCTGGGTAGAGG
GTGGTATTCAGTGGCCTCAACTCCAGCCCAGAAATAAATGGATTCCCCGTACCTTTGTTC
ACCAAACAAACTTGCAAGTAATCAGTAGGAGCCACAAGTAAGATGTCCATCCAGTTGAAT
GCTCCTGCATCACTGTAGTTTACTTCATGCCAGTAGTTTGTCCCCAGGTAAAGATCAAAG
ACAGGAGGTTTGCCCAAGCCATCATAGTTTCCATAGTAGAAGGAGGCACGAACAAGGTAC
TTGTTTCCCATCACCAAGGATCTCAAGGTGTAGCAATTCCTCGGACCATGTGGAAAGAAC
CGGAGATTGGAATAGCTTTTCGCCAGTGATGGATCCATGTAATCTGAGGAGATGTTGCGG
TTTTCTCCCGTGGTGATGAAACCATAGTCTGATACATATACTATATTTGTAATGGAATCT
TGGTAGGTAGAATTCACTGGGATGCCACAATCGATGCTTATGAAACCTGGAAACAAAATA
CAAGTCAAACAGATTTATATCACCATTAGTTATGCACCATGGATTTCTATCTTCGACCTT
GAATAAACTTTTGGCTATGAGCAACACAGGGGCTTCTTATTGTACATTTTCTGAACAGAA
AGAGCAGTAAGAAATAAGAATTGAGGGGCAACGCACCTTGATAATCAGGCTGTCCATGGA
TCAACTGGAACATGTAGAGAAGGAGAACTGCTACACATAGCTTCATGCTTATTCTTCACT
CTTGTGAGCAAACTAGAGCCTTCTATCTGAGAGAGAGAGGGAGAGAGAGAGAGAAGGGGG
GAGACGGGCATATATGCACATCCATGGGAGTAGCAAATGCTTTCACATGGTATTACGGTT
GTCCTATTCGACAATGATAGATTAAGAGGGCCAGCATACAGTGAGCTAGTGCGGCTGTTT
CGAAACAGTTTCGTCATGATAATGAAGTATCTTCCACCAATAGCAAGGATACAGCTGCGA
CAAAATTGCAACTTTTAGACTTGAAGCTACGACTCCTTTGTTGGCATTAGAAAAAGACTG
TCCTCTCATGTGGTTTGGTCATCTCATCTAAGTAGAATAATAAATCAGAAGGGCGAGTAA
ACCCCATGGCTCAAGCATTTCAGCATATGTATTAAGCTCTTGAATATAACCGACGTGTGG
AACTAATTGTATTCTACCCGATCTTGTTGTGGTGATCTTGTGGCCATGGGCTTGGTGCAT
AACTTAACTGCTGCTATCCGTATAATCAACCTAATGAGCTTGCGCACTAAACTAACAAGA
TGATCCTAAGGACAAAGCTAGGGAAGAATAAGGTACCTCATTGCTTACTTATTACGATCT
TACCACTCCCTTAACAATCTTAACAATCGGGATTACTGCAGAGAAGCCCTGATTTTTTCA
CCCGGATTTCATGCTCTGCCAACAGCTTCAGATGGAGCCACGTAGCTGCACAGCGACCAC
CGACCAGGTACTGTATGTGGCATTGTGGCCACGACAAGGGGGCGCGCCGCATTCGGAGAC
CCTGAGGCGCGGTCGGCACGCGCAACCCGTACGCCCCCGGGGCCCCGACGGCGCCGCCGC
GTCAAGACACCACCGCACGAACTACTCGGCCAGTGGATGGCAGCGAGCCAGATAGTGTGG
AGTCGTCCCTCTCGGTCTCCTCTCCTTGACCTCGGTGTCAGTGGGCATGTCGGCACGCAC
TGCACTGCACTGCCCCGAAGGAGATGCAGCGCAGGCAGCCAAGGGAGCCATTTCGTCGAG
CACCCTGCGCGCGCGGCGACCGAAATCGACCCCGGCACGCACGCCTGCGTCCGCGCCGAG
ATGAGAAGCGCGGCGTCAAGGCCGACGGTTCCCCCAGAGTGACGCGCACGGGGGGCGCGA
CCACGGCAGCGCTAGCTCCGGCGATGGCATTTCGCCGAACATACATCGGGCACTGCTTCT
CGGTGGGCGGTGTGGAATCAACATGGAAATTCAAATTTCGCGGTGAGGCGGGGGGAAACT
GGACTGCGGGACCCGGTGTCAGTGAGGTAAAAAAAAAACCTTTCCCGCCTTTCCTCCTCC
CTCTTGGTCAACACAAGGTCAACCATCACCATCATCAATCTGGTGATGTTTTATTCCCTC
AATTTTTTTCTTCCGAAATTCCATTCCTACATGAATGAAACAAAGCAAAACCTATACGAA
TTAATCAACAAAAAGAATGTACAAATCCACCCACCCACCCATCCATCCATCCTAGTAAAA
AAAAAAGCCTTTTCCCACTCTTCTTTTTTCTCAGTTATTCAATTAACATTCCTACTACTG
AACATATTCACCGACGACGATGCATGGGCCGCTTCACAGGTCTCGTTGCTCCCGGAGCCG
CTGCTTCTCGTGGAGCTCCATGAGCCTGGAGAAGACGCCGACCATGGGCGCGGTGTTGTA
CGTGCATGCCTCGGTCTGCATGTACGCGCCCCGCTGGTCGTTGAACCGGTCCTCGCCGTC
GGGCCCGCCGACGACGGCGCCGACGAGGTCGTGCGGGTTCCTCTCCCCCGCGCTGTACCA
CGAGTCGAACCCCTGCGTGCACCCGATGAACCCCTTCTCGTCCGTCAGCGACGCCGTCGA
CGCCGCCCGGTGGTGCACCCGCCGCGGGTACTGCTCCCCGTACCCCACCAGGTAGCTCGT
CTCCATCGGGTTGCTGCCCAGGATGTAGTCCGCCTGCGCCTTGGCGAACGCCAGCACCTC
CTCCGCCCCCACCACGACGTCCGCCGCCGTCTCGCCGCCCGTGTCCGAGGTGTCGGCGTC
CTCGTCCACGGTGCAGCGGAGGGGCTCCCCGAGCGCCGCCAGGTGGTCCGAGTGGACGGT
CAGGAGGAAGACGGCGTTGGTCACGTACTGGAGGTTGTTCCATGGACGGATGAAGATGAG
CCCCGCCGGGGTGCGCGGCGCGTTGCGGGCGGCGCCGCCGGGGTTCTTGTTCATGTTGGA
GCACACGTAGAACTCTCCCTTGGACCGGTACTTCTCCAGCACCGTCCGGTACTCCGAGCT
CAGCTCCTTCTCCTCAATCAGCAGCTGATCGATCAATGGCCAAGAGAGAGGATTGTTAAT
CGCACGGATCAAAACAGAATTATTGCTAACTAAACAGCCGATGATGCACGGCTAGTTTCG
GTTTTTAATTGACAGCTGATTTGTAAATATAAGACCTGGCTTTGAACCCTTTGACCTTTT
GTAAATAAAACAGTTGACCCTTTCTGAAACATGTGGACCTCTATAGGCTTAGAGGCTGCA
TGTCGATCAGGACGTTTGTGAGCACCTTCTACAGTAGTAGTCAAACTATGTGCCAAACTT
AATTATTAGGGTTGACTTAAGCACAGTGATCGTAATCAACCTGTCCTCCATTTGTCTGGT
AATATTTGAGTGCAGAATTTCGACATCAACTGACAGATGCCATGGTCGAATGGCATATAT
TATCATGGAACTTAATTTCAGCGCAGTACATAATGAATTTTCCAGGTTATAAACCAACCC
GAACATCAAAGAAAAATGGGCCGTACGTATGGGCCACACGATCCTTGTGGGCTCAATTAC
TAGTAGGTGCTCAACCTGTGATCCAACCACTTTGCTTCTCCCACACAGACATGCACTCTA
CTTAATCCAAAGAAGAAGAAAGAAAACCGTGCAGCTACTGTCGGTTGAATATTTTTTTTG
TCTCATGTGCTTCTACTATTTTTTTCCCTCCTCTCACCAACTTGATTAGCCGATATACAT
TAATTAAACGACGGAAGAAATGACCATTCGACTCCTCCACTCCACTTGGGCAAGTAATTA
AGTAAGATGTCCAGCCAGAGTATCCATCAATCATTAGTTGAATCGCTTGCTTCAGACATC
ACATCCCAAACAGCAGCAACCCATGCCAGGGACAAAAACAGCTTGTGGATGACCAAAGAA
AGAGGCATGCGATGAGCCTTCACCCTCACCCTCATGGCAAGAGGAGCTAGCTAGCCGCAT
GCTGCCTTGCGTTCTAAGCATATGCATGGGAGAAAGAAACAGAAGGTGTGGTCAAAGGAG
TTATGATTAGGAAGGCAGTCCAACTCCCAACGAGACCTGAGTGACAGTGCGGCCGTCACC
TCGCGGACAATCCAGGTTAGGTTAGGAAACCGGTCTGTTTCCGGAAGGTTTTTTTAATAA
ATTGGCATGGCATGGCAGACACCAGGAGGAGCACATGTGAAAGGAACGTGTTGGAAATAT
GGTTGCTCACAGGACAAAGGCGCAGGTGGTGTAGGCCGGGTAGGGTAGATCAAAAGATCT
CTCCTAGCTAGTTGCATGTTTGTATTAAGTACTGTATATAAAACAAATTTGGGCATCTCT
GATCTCTTTTCACCCGGCCCTCTTGGTGGGCTGAGCATCGTCTGCTCTGCTCTGCTCCCC
AACCATGATTAGCTTTTTTGTTGAGAATCATCATCAACCATCTCATATGCTTATATATAC
TTAACTGGAGTCTGCACATGGGCGCCGGGCCCTCTAACAACAAAATCAACGTCTACGCGA
GAACACGCGGTGCAATTCGGTCGAAAGGCTTTTGGGATATGTATATGCATTCTACTAGAA
GAAGCGTGGAGAGATGGCCGGTCCGGGCGGAGTTGTTGGGCATGGCGCATCCATCAACCC
CAGCGGAAGCACCCCAAGAAAGCATGCTAGGTAGCCATGCTTGCAAGCTAGAGAGAGAGG
GTGCGTGGCTAAGCAAAAGCTAGGGTGCACCAAACACGCGGCTTGCTCCTCATGCTAACG
ATGCAGAAACCGGTGGCACGTCTGTCAGTTACTACAGTAGAGTACGTATATGGGACGAAT
TAACCGCATTCATACCATGCAGTATTAACCCCTGTTATTTTGTTACGTAGTACTATACGG
CTGCTACTGATTACCACAGTAGTAATTTTCTTTAAAAATTGCCAACTAACTATATTTTGG
ACTGCTAATTTTAATATTTTGGACTGGACTAACTAGTAGAGTAGTAATTGACGTATGGCT
TTGACTAATTTACAGCTAGCTGCCGCGATCGGCGGTGGAATGATCCTATTTTTGGCGAGA
GGAAATCATTCTTATCATGCATGCAGCGATGAAAAGGTAAGCAAGTTTGACCGGTCCAAA
GAAAGGAAAGGTGGATAGGTTGGTGCATGCATGCATGGGTTGCTTGCTTGCGTGCGTGCG
TCAGCAATGGAGACTGATCACTGATCGGTAGTACTGACCTTGGAGGCGAGGATCTGTAGG
CCGGGGTACTTGATGTCCCAGCTGAACTCGGAGACGCCCCAGCCGGTGCCGCCGAAGTCG
TCGGCGTTGGAGACGACGGAGTCGCGGTACTCCCGGCCGCCGGGGGCGCGGGGCCGCCCC
CGCCCCG