Contig Data
morexGenes
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Map Locations of contig_2548781 (6119 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2548781

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_37644 1 498 bp None Available Available None
MLOC_37645 3 1979 bp MLOC_37645.1 Available Available LOC_Os01g68860.1, FRAME:-3, EVALUE:0.0, 13101.m07506 protein zinc finger C-x8-C-x5-C-x3-H type family protein, expressed





CDS Structure of MLOC_37644






CDS Structure of MLOC_37645






Contig Sequence (6119 bp)

>contig_2548781 6119 assembly3_WGSMorex_rbca.fasta
AGGAGGAGGAAGAGCGGCTTGGGCATCGTCGGCGGGGTGGAGTGGGGATTTGGACTGTGC
AGTGGGCGGAGAGGGGTGGGGAGGGAGGGAGTGTGAGGTCCTTTTCGGGAGCCGACGACG
GACGACTTGGGAGGGAGGCCGAGATCTCGTCTCGTCTCGTCTCAGTACTCGGTACCGGCT
GGCTGCCGTCACGCCCGTCAGTCGAGTGGGCGCCGCACCGAGTGGACGGTAGTAGTAGGA
GTAGAAAAATACAGTACGTACGCAGGAGTGGGCGGTAAACAATAGTACGCACATGACGTG
ATGGTCCGCGTTGAAACCGCGCATCCACTTTGGCGCGTTCATACGCACTCGAGATCTCCC
TATGCCTATATCTCCTGCCTAGGAACAGGATCTCGACGTGGACGAGGCTGGTGGTGGTGG
ACGATGGGAATGTGATGCCGGTGCTCGTGTGCGTCGCGATGGTTCCCTTCTCTTCTCATG
GCCTGGACACACGGACACCGGGTCACTGCTGCAGGAACAAGCTTATTTACTCCCTTTGAT
TTGATTTGATTTGATTTGATGGTACTGCTAGACCATCATTATTACGAGTGTCGAGAAGAA
GAGGAAGAAGGAAATTGTTCGTGGAGATGATGGCAGATGCACCAGGGCAGCAGCGTTGAC
ACAAAGCCGTCCTACATCTACTTCATTGATAGGACGATTCCACTGTTGCGCGGTGCAGCT
GATCATCATCAATCAAGTTTTACTGCCACCAAAGACAAGGTTGATGAGACGACGCTCGCT
GGTGAGTGGTGACATGAGATCTTTGCACTTCGCAGGCAACGTCGAGGACAATTTGGTTGG
CTGCTACCACAAATTGAGGCAAGCATTTATGCGTCACCCCCGCAACAAGAAAAGTGGTTG
GACCAGGTTCGGCGCCTTATCATCATGGCCTCCCCTCCCACATTAAACTCGGGGTCGTTG
GGAAGACGCCGGTTACCTCACAAAACTTTCCCGGCGACAAGATCATGATGGCGATGCCTC
AACTGAATTCTGCACCAAGCTTTTGCTTGCTCCTCGTTCTACCTCCATCCTTCACCCTGC
GGTCAAGAAAACCCAAATGCAGGAAAGAAAGAAAGAAGGAAGGAAAAATATGGCCTCCTG
GTGTTCGTCCACACGCACACACACGACATCCGTCAGGAAACCATATTGACGAAAAAAAAT
GCCGACATTTCCAACGACTGCATTCAACCATTATTTCATTCGGTAGCAAATGGCTTCTCC
ATCCATCCATCCATCCAAGGACCCGCATTAACAAAAATAACTGTACATCTCTGGTAGCAA
ACTCGATTTTTACAGAACTTGATTCCGGGGGAGTTAGGGGGAGAGAACATTCGCGGGGCG
CGACCGAGGACGGACGGCGCGCGATGGCTTTTTATACATCATCATCGAGATCAATCAAGG
TCAAATTGCCGGGGAGCCTTAGGACGCGTACGCAGACCCGGAGGGCGACTCCAGGAGACG
GCGAGCCATGGGCGCGTTGGGCGACGCCGACGCGGAGTAGCCGTACGCGTAGACCCCCAT
CGGGGCCGCCATCGGATGGTCGAACTTGCAGTTTACGCCAAACTTGCAGATGCCATAGCG
AGAGTAGAACTTGCAGAGCTCCTCCCCCTGAAAATCTCAAACAAGAATGGCTTTGTCATG
ATCCAACAACAGGTGCGCTGGGAACAGCAAAGATGAATACTGGTATTTGAGTAACTGCAA
CAAAATCATTGGCTAAGCATATCTATTCAAGAGGAAGTAGCAAGTCGTGTCAACGATTAT
TAGCTAAGAACAATCAATTCAATAGCTAAAGTACAGCGTGTTAACCAATTAATAACTAAA
CAGAGGTACTCCCTCTGTTTTTATTTACCTTGCATATTAGGTTAGCCACAAGTCTTTATA
AAGACTGAACATTTATAATAAGAAATACTCCCTCCGTTCTAAATATAAGTATTTTTTAGA
GATTTCAACATGGGCTACATACGGAGCAAAACGAGTGAATTTACACTCTAAAATAAGTCT
ATATACATCNNTATGTAGTCCATATTGAAATATCTAAAAGGACTTGTATTTAGGAACGAA
GGGAGTATTATCTTATGTGAAAATATATTCAGTGATAAATCTAATGGTTATGCTACTGTA
GACATTAACATATTTTTCTATAAACTAGGTCAAACTTTACAAAATCTGAATTAGGACAAA
GTTAATATGTGGAGATAAAAACGGAGGGAGTACTCTACTTATGGCTTCCCTGCTAGATTG
GTAGATTATAACAATGTTTTGATTTTGTATACTGGCATCAGTTAGCAGTCTATATCTACC
ATAGTGGATTTATCACTGTGACTTCTGCCACTGAATTTGATGATAAAACAGTGTGTAACC
AAGACAGGTATATTTTAGTAAATTAACACAAGATTTTCTTGCTTGTAGAAAATTGGTCAT
TAATATGAGGAACTATATATTATTGCAGAATCAATTGTGTAACTAATAAACATAAACATT
GATGAAGCATTTTTGGTTCTACAATTCATCTCAAATCTTTACTCAGAGAAAGACATGTAA
ATCAACTGCTTAATTAAGACGGTACTAGGGTCTTTCTCCCGCAGAGGGATGATGAAGGCG
GTACAACGCTCAGAACACGGGAGCAAAAACTATCATGGACAATGAGGTAAGGATAAGCAA
AAACAGTGAAGGGGCTCCATGTACTTACTGGGCGTAATGGAAGACCCATTGGGCTCAAGA
TACAGTCTGGGGGAGGCTGTGAACGCACACGGGGATGATGGAATTTGCAAACTGCACCAA
ATTTACAGTCTCCAGTCTTTATGTAGTATATGCATTCCGGTTGATCAGGTCTCTCAGGAA
ATACATTCTCTCTCTGCAGTGCATACTGAGGTACAGGAAATGAACTGGATCTGTAGGGTG
ATTGCATTCCCTGATTTCCTGCACTGCCTTCACCTTGTCGAGAAGTTCCATAGTATTGTT
GAGCTCCTGGAGACTGTAGTCGACTCTCAGGAGATGAAACAGGTACCATTTGCCCCTTGA
AAGATAAACAAAATCACAAATATCAACCCTAAATATAGACTCCAAAATGTCTTTCTTTTT
TTACAAATTAGAGCTAAATCACTAAAGGCAAATAATTATAGACCAAGCTGCATGTCAGAG
CTTTCCAAGATGCATATAAAATGAACTCATTTGCGACTGAACTTAATTATTTTCTTTGAG
CAAATCATTATTATCTAGTTGGAAGATTTGTCTTCCAGGAAACGTCAAACATGGCAATAG
TAATTGAAATAGCAACATAGTGCAAGTATAATAGACAGCCAATGGAAACAGGATCATGAC
ACAGAGACAATGGATCAAAGGTTAGACTTGCAGAAATCCAAATAAAGGGAAAAGGATAAG
TTAAAAGTGGAGACTTGAGACTGACGTATTTCATATGTTATTCCCCTGTTGGTCTAGGAA
ATGAACAGAGAAACACATCATGACTAAGAGAAAATACATTATGCTGCATTACTATGAAAT
GAGATGATCTTACAGGATATGAGTTCCAGCTTGGTACTTGAACAAGACCCTGCGGTACAA
TCATCGGTGTATAGTTTGAAGGACTTTGCCATCTAGGGCTTGGAATGAAAGAACCTCTTG
GATAAGTCCAACTTGCCATTGTTCCAGTATAGGAATGTGGACCAGTGCTTCCAGAGGTAT
GTACAGGAGGATAAATAGGGGAACCACGTGAAGAAGCCACCGCATTGAAAATTTCTGGAT
GGTTAAATTTACATGTATTCCCATATTTACACTGTCCCGTTTTTAAGTAGTATGCACACT
CCCTTTCATTCTACAACAGCAAAATAGATTTCAGCTCAGTTCAACAAATAGAAAAATATA
TAAAATGATGTAAAAATAAAACAGTCTGCTAACAGTGAACAACTAACCGGTCGAAGTGGA
TATCCCAATGCATTTAGCTGCACCATTCCTGCGATTCCAGCCTTTTCTCTAGGGTGATGG
AATTTGCACGTAGGCCCAAACTTGCATGTTCCAGTCTTCAGATAGTACTACATGAAAAAC
GTTGAGAAATTCTTTCAGTTCAACACTTGTTCAGCATGGCATAAAAATGATAAAACTATA
CCGCTAGTAGATTTGAAGATATCGATTCCACATGCATGCCATGGAAACAAATAATACCCT
ATATTTTTACAAAAGGGCACTCCGAAATTGTGGTTGTCATCCTGACAAAAACTGAAGCTA
AATCACCAAATGGTTCTTTTCTTGCTGTATGAGTGCTTCTACAAATTCTTATAACAGTTG
TCTTGTCTGGTTTGTTTATCACATGATAATCAGTCCTTACATACAAGCACTGAAGAAAGA
ACTAGGAGAATTACAAAGTCCTTACATGAAAATACCATAACTTCTTTTTGCTTGACCTAT
ATGGACGCATTAACAAAATTTAAGACCCCTTTATGCCACATGTTTCCTCTAAGAATTTGT
TAACTAGATAAATAATTGCTCAACGCATCGCATAAGCAGAAAACAAGCCACATACGAGTA
TATGACACTACTGATATTGTTAACCAGGGCAGCATGGCGTGAATCCAAGTAAAATCAATG
ACTAAACAACAGCTTCTGAAAGAACAAAGAGTTCCTAAGTATAATTACCTGACATTCAGG
CTGTCCCACCCTCTCAGGATATTCTCCTTTCATTCTGGCAGAGGCAATAGCCTAACAATA
AGCAGGTCAGTTGAGAAGAAAAATGTGAGATGAAGCAACAACAATAAGTATATAAAGAGG
TTTTACAGAAAATTGGCAGTTAGTACTGTAATGTGTGTAAGGAATAGGAAAGACATGCAG
CTTGCCGGTGGCAATCAAGAATTATCCAAGAGAAAGGGAATGCTAGTGACAATTATCCAA
AAGAAAAGTGGATTCTATCTAGTACGACACATGAGTAACATATAGAAAGCTTTATCAAAT
GGAAATGAAAAAGTACAGGGAATCATAGACTAGATAAAATCTTTTTATCAAAACATACTT
ACAGATGTTAGGATACTTATGCGCCTTTGAATGAGAAAGCGCTTAAATATCTAAAGGTGG
TCATATGAATCATGATACTGAGCATTTTGCGCATTAATTATTGCCTTAAATTCGGTCAAA
GTTACTACATTTGATTCCACGTTGCAATAGGAACAAATCAACACAAGATGTACTAATTGC
GTATTCATTTTACAGTCCTGCTTATGTACTACATGAGGATAGAACATATTGGAGAATGTG
GAAAACGTAACCCTGACGATAGTGAACATGCGAAACAGAGCAGTATGGAAACAACAGCTG
GGAGAGGGTAGTTTGCTCACCGTATTCCTGTCCTGAGGGTGATTGAACCTGCAGCTCATG
CCGAACCTGCACAATCCAGTCCTGAGGTAGTAGGTGCAGTCCGGCTCCCCTGGCCGCACA
GGATATGGCCCAGATTGCATAGTGACACCGCTGTTCATGGTCATCTGCTGCCACATTCCC
TCTGCATTGCGCGCACACACGAAACTGGTAAGAACCGAGATCAACGAGTTGGCAGATTGA
TTTTTAAGCGCCAACAAAGTATCCACATTCTGCAAGTAACAGCATGCAAAACACGGAAAG
TAACAACACCGCGGCCTGACACGATCAATCACCCTCAAAAACCCCAATTCCACGCCGACA
CGGACACGCGCAAAATAATAGCTTTTAGTCGCCGTCAAAATCCGCCGGGGTTACCACTCC
CCGATCCACGGCGGAATACCGCGAGAACGACCACTGATTCCGCAGGAAATCGCGGGGTAA
AACCGAGCATCCGAGCTTAACCTACGGCGCGGAATTTAGCAGCTTCCGATTATAACCCCA
ATTCCCCAAAACGGCTCTGGCGCTCGCGCATGACGGGGAGAGGAGGCACGGAAACCCTAA
CCTTCATAGAGGGCGTCCGGGTCGGGCGATGGCGGGTCGGCGGCGGCGGCGGCGGCCGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCCGCGGGCGGGACCGGG
GCGGGCGCGGGGGCGCTGCGCGCGCAGTGCGTCTGCGTGGCGCGGTTGATGCTGTGCGA