Contig Data
morexGenes
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Map Locations of contig_2548765 (5936 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_2548765

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_37634 4 3799 bp MLOC_37634.1 Available Available LOC_Os01g41890.1, FRAME:+1, EVALUE:3e-16, 13101.m04299 protein MLA1, putative, expressed
MLOC_37635 1 1511 bp None Available Available None





CDS Structure of MLOC_37634






CDS Structure of MLOC_37635






Contig Sequence (5936 bp)

>contig_2548765 5936 assembly3_WGSMorex_rbca.fasta
TTTTTTTCTTCTGTGACAACGCACGGGCCCATTTTGTAGTCTCTAAAAAGAATTATATTT
AGGAACGGAGGGAGTACAACATAGGCCAGATGGCAAATTCTAGTAACAACTACCCCTATG
GTCGTGAAAAAAAGGAAACTGATTTACATCTGTAGGTCTGTGGACAGTCTATCAAATACT
ACTGTAGATCGCTAAGATGTTATTTGTTTCCTTGTGCTGACTGCTGATGGAAAGCTTGGT
AATAACATGCCACTTGTTTAAGAGAAACAGGCAGTTTTTACCAAGCATCGCACCAAGAAA
ATGACCTATCAATTCACGGGAGGCAGGCCAAACGACCAGCACCACCTCTGAGTCTCTGAC
TCCGAGTCCACCACTCACGTGTAGTGCAGCAGTCGCTGCGGCTGTTTTTACTCAAAAAAA
AAAATTCTCCAAAGTTCGTGATATTCATTCGAAGAGTGTTCCCTGCTGTGATTGATAGCG
TGAAGGATCAGTAACAAGCATATCTGCATATGAAGCTGGCTGCATAAAGCAATTCTGCCA
CCAGATAATGGAGAAACGAGAAAGAGAAACAGATCCATCACGCTGACTCACGAGCATCAA
AATTCACGAACAACGACTGAATAAATGGAGCTATCATACTTATCAGCAGATCGAACCGGT
GGATAAATAGCACTGGCGAGAAGTATGTACAGGCAAACGGGTACAATCTCTACTACTAGA
GGGAGAGAGATAATCAATCATCATCGAGTCGAGTAATAGACGGTAGCAGGCAGATCTGGG
GGAAAAGGACACGAACAACCAACAAATCGCTAGTGAAAACAATACTGCTATACTGCCATC
GACGGACGGAGGCAGCTGCTGCTGCTTCAGTGGCGCGAGGCGGCGAAGAGGAAGGCGGCG
CCGGAGGCCACGAGCGCGGCGGCGAGGGAGGGGGCCGCGACGCCAGCGGCGGACATGGGG
CTCGGCGCCGGGGCCTCCTGCGCGGCGACGAGGGAGAAGGCGGCGACCGACAGGACGGCG
AGGACGGCCACGGCCTTCGACGCGATGGCGGAGGCGGCCATTGCTTCTTCGATTGGTGGT
GGCTGTGGCGGCGGAGAGTGGTAGAATAAGAGAGGAGAGGATCGGATCTTTGGTGTTGCT
GGGGAAGGCACTGGGGAAAGGCGTAGGGGTGGGGAGGCCTATTTATTCTGCGGGGGTGAC
AGCTGGCCGGCCTATGGGCGGTTGACACGTCCCCGCGATTTCTCTCGAAGCATCTACACA
GCGAGGCCAGCCGGCCGACCGTTTCGCCTTTTGTTGCGTTGCTTCGGCGCGAAGGCAGCC
TGTTGCGCGCGCACTGGCACCGCCCGTCGCGTCCAGCCATGGGCCATAAACATGGCTGCC
ACGTTCCTTCTTTTTCCTTCTTTCTATCGGGAAATGGACACATGGCCTGCACGGCTAGCC
TTTCACAGTTTCACGCCGGCCGGTCACCAACTGATGCGCGCGCGCCGGTGATAAGGTACG
TTCCTCTTCACTGTGCTCGCCGGGGGTATTAGATGGCGCGCTGCCGTTGGAGGATTCGGT
GCTTCGCTTGCGCATGTACAACCCCATTATTTTCCTACCTGCCTACGTTTGATCATTCCA
CGACACGACACGACACGACGGGCTTGTGGCCGAGCCACGAACAGCTGCTAAGTTGTGCCT
CCGTCCGGAAGCGAAAGCGACGTGTACATGGCACGTGGTGGTGATTAGGGGAGAAAACGG
ATGCGACCTGTAATTAAGATGGCGACGCCTATCTTAACTACTACTTCCTCCTTCCTTCAT
TTTTAAATATAAGTCTTTTAGAGTTTTTATTAAAAAACTATATAAATATAAGTCTTTTAG
AGTTTTTATTAAAAAACTATATATGGATATATATGTATGTTTTAGAATGTATATTCATTT
ATTTTGTTTTATATGTAGTCTCTTAATGAAATCTTTAAAAAGACTTATGTTTAGGAACGG
AGTGAGTAGTACGTAAAACTGAACCTCATTCCGGCCAAGCCACATCAAATGCTGGCTTGT
TTGCTCCACGAAGTTACAAAGTGCGCGCCTGCAAAGTCACGGCCGGAAACTTAGCAATGG
CTTTGCGGCGGGTGGGTAACAAAATTGCTCTCCCTATAACCTGAAAAAGGTTGGCCCTAA
TTAATAACTGGTGCACAGAAAGAGCATCTCCAGCTCCGATTCAACCGGGTATGCAATCGC
GGCTAGCGCCCACTCGTCTTTTCATTTCTTTGCGTCTGCGGCAATCTACCTCGTGTCAAT
ACTTTCAAATTCATACAACCTCATGCAACGTACATAAATCTAACACATGCCAGTTCATCA
TATGACCGGACATATCATAGTGATCACATGTCCTTCCCATAGTCGTCTTCTCAGTAGTAG
GCGTTGAAGTCGGCGTACTCGTTGGAGGTGCCGGAGAAGGTAGACCTTTACATCCATCGG
TCAAAGATGGGAGTGCCAGCAGCTAGTGTTCTGACATAGACATTTATACGATACTAGTAG
AAGATGCCACACATAAGGTGAGCTATGAAAGAACAGGTGAAATTGTTGTACAGTGCACCA
CCACAGGTAAACAGGGCCATAATTTTAGTTCAGCAGATCAGCAGTATGTTTACACAGCAG
AACTTTATAGACCAAACTTCATGGCAGCACCGCTATAAACAAGTACATTAGACTGAATCT
CTAATCAATGCTGCCACCTACGATGCCTTGATTATCTATTATCCAAAACAACATCAAAAC
TAACAGATGAAAGAATAAAGAACAGTGGATATTTATGTTCTCTACTTGGACGCATATGGT
CCATGTTCTAGAAACCCCAAAAATGTAGTGAAGGTACATTTCTCACGGACAAGTATGCGT
TAAAATCACATTCTCAGGGATTTTTTTCCTACACATTTTCTATGAATCCCTCCAGCTTTA
GCATGGTTTTTTGTTGTCTTGTTACTCGTGTTACTCACGAGCTTCAATCACCGCGCCTAT
TTTATAGGCTGTCATGACTATCAGCTCAACAACTTCTCCTTTTGGATGTACTATTGTCTC
ACAAAACGTGGGTGGTGCGAAGCTGAAATCACACCGAAAACCAAGCAAGCATTAGGCGGT
AACCAGTGATAAGCATTTGCAATTACCAACTGTTGATGCCACCATTGTTTTCAAATGGCA
AATAATGGGTTAAACAAAATACGTAGCCTTGAATCATAGCAATTACATAGAAAAACAAGC
ATGATAATCCTAACAAAAAATGCACAAGTACGCATTAAAATCAAATTCTAGTGTGAACCA
CACAATAACAATTATGAAATATGAAGCCTCCAAACTGACCCACCATGAACTTTCCATTTT
GCTAGCTGCAAATCCACACAAAAGAAGAGAACAAAACTGCGGAAGATGCAAGGCAATAGC
AACATCTACAAATAAAAGGTGAAATTTCAAAATGTTCTATAAACTGAACGACTTAAATTT
CAGTCCACAAGCATTTGAGTAAACAGAGAAATGAAGAAAAGAAGTTCTTCATGAGCAAAG
TAGAGCAGGCACCGCAGAGTAAGTGGGAACGACAACTCGCATGTATGTTGCAGAAGAAGG
ACAAATCAAAACACCAAGGGAAATGCAGTGTTATCAGGCCGTCTCAATTGACAGGAATGG
AAGCATATATCCTAATTAAATCCAAAAGGAGGAGAACTTAAACCGTTTAATCTTCAAACC
TGTCATGCTCTTCGGAATGTTTAGTCTTCAAATCTTGCCTTTGACTGAGTGCCGTGCAAA
TGGTTTTTCTTCACTTGGCAAAAACATATGGAATCAATCACCATATCATGTATACGATAA
GATTTTTCCATGCCTTTATCAACATTGATGTCAATTGGCTGAACCATGCTTCTATTTGCG
ATCTCATTGAGTAATTCTATCACCGAGCTCAAACTTGCTAATCCCTTGTTTATCATTATA
AATAAAACCTCAAACTATCCATTTACATATCAAATGAGTTTGCTTAATCTTCTAAAAACA
TACTTGGACATAATAACTAATCATATAGATATATCAAGGCTACTAGTAGTTAGTAAAAAA
AGGGTTGACTTGTAGATAACCGCTCTTGTATAATCTAAAAGTCAAGAGCCTATTTTACTC
ACTCTATGCTACTTTGCATAGTATTGGTGCAGCATGTGTGGCTTGTACTTATGTTTGAGG
ATATTTAAGCATATTTCCAAAAGATTACAAAATTAAGAGAGACGAACTGATATGGAGATG
GATAGCTGAAGGTTTTATATATAATGCAAACGAGAAATTGGCCGATTTAAGCTAGGAGAG
AGTTACTTCAATGAGCTCATAAACAGAAGTATGATCCAGCCAGTGGGCATCGACGGTGAA
AGCATAACAAAAGCTTATTGTGCACATAATATGATGATTGATTAACAAAATAGCCTTCAC
TTCATCCCATACAAGGTACCTATTCAAATGAAAGTTTTTGCAATGGTTAGCGGCAACCAA
ATCAGCAAGATATGAGCTAGTTATCTATCTAGGCAAAGCAAAACAGCTTATATCAAACAC
CCAATGTGTCCCCGCAAAAAAGAAGTGGATGACCAACGATCTGCACACACTAACCAGCAC
AAAAGAAACCAGTGGATGATACAGGTGAATAACAGTATCCTTCCATTTCGTTCGAAGCAT
CATCTTTTCAAGTCCCAAGCAGCTGTGATTTTCACCCCACACTAGTATGACTATAGCATA
CAGTTTTCATAGGCTAAATACTGTGTAGGAAGCTTTTGGTGGTTGACCTCAAGATGTGTC
TAATACAGATCCACCTAGGACCGTACACAGAATAGGAAGCTTTTGGTGGATGCGCTCAAG
TAGCTTGTATGACCAAATTAGCACTGTAAATCTATCATGTACAGGCAGCAATGTGCACTG
AAGAACTAAGATGCACACACCGGCCGGCCAGGGAAGAAATGACTGACACTCGTGATTTGC
TTGGAGAAACTAGATCCACTCGTCATGATTTAACTGGATCTCGAAGAAGACGCATGATTC
ACTTGGAGTAGAACGGAAGGAAACACACGATGGATGACCGACAGCTTGCTTTTCAGTCAG
ATCCACATCACCGTGATCTTAGCCGAACAAATCTAGCTCAGTCGGATCTAGAACTAACGC
TTAAGGAAACCTACGGCTGACCACCAACAGTTAACACTTGGTACTCGTGATTTTTTGACT
TGAAGAAACTAGATCCACTCCTGATTTAACTGGATCTTGAAGCAGACGCGTGATTCACTT
GGGAGTAGAACGGAAGGAAGCCTAGGGTGGATGACCGACAGTTTGCATTTCAGATCCACA
TCACCGTGAACTTAGCCGAACAAATCTAGCTCAGTCGGATCTAGAACAGAAGAAGAAAGA
AGTAACGCTTAAGGTGACCACCAACAGTTGGTGACACTAGATGAACACACAGCAGATCTA
CTCGTCGGTAAACTCGAAAAATAAAGTAGTCGGATCCAGGTCAGGAAGAAACGAAATATA
CCACATGTTGTTGACGCACTTGTCCAGCGAGATCCGGCGCCTCCCCCCTCCCCTCCCCCT
GCGAGCACGCGCCTCTTCGGAACGCTGCACGTACTCACCGGCTTGCAGGCCGCCGGTGGT
CGGTAGGACGGGATAACCGCCGGAGGAGCCCGGCGCCGCGGGATCGACCCCTCTCTCTCT
CTCTCTCTGTCTCTACTGAGTCTCCCACTCTCCAAACGCGGTAGATATAGACGCTGAGAA
CAGATGACTCGTTGGTGGACACGACCGACCATGTGCTGCCGCCCCCATAGCCGCTGCCGT
CCTCTCCTCCGCACACGGTATGGCCGAGTGCAACATCAAATTAGAGGGTGCTTGGATCCA
AGAGNNNNNAACTAGTCTGACTAAAACTAGTCTTTTAAGAGGCTAAAGTTCCAAGC