morexGenes - Barley RNA-seq Database

Contig contig_2548533
Source Contig contig_2548533
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2548533 (6284 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2548533

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37500	1	349 bp	None	Available	Available	None
MLOC_37499	8	4579 bp	MLOC_37499.1	Available	Available	LOC_Os11g07260.1, FRAME:+2, EVALUE:0.0, 13111.m00757 protein expressed protein
CDS Structure of MLOC_37500

CDS Structure of MLOC_37499

Contig Sequence (6284 bp)

>contig_2548533 6284 assembly3_WGSMorex_rbca.fasta
AGGAACGGAGGGAGTACATTCTAACCTGGCATGGAATTTTCTAATCATGAATGTGTGAAA
CAGTGCATCCATGTTTTGGCTGGGTCCAAGCTCCAAGGTGGGAACATGTGGTGCTGCAAA
TCACACTGTCATCCTTGGGCCGTGAGCACCATGTCCACACCTGCTCGGCCGGCAGCTTGG
TCGAGAATTCAGGCCTGCTGCCGCTCTCTCTGTCGTTCCTCATGTCAAGAATCGTAGCGT
CCTCATTAAGGATATCCTGATGTCATCGTCTAAACAGAGGCCGCCCATGAGGCTATCATC
TTAAAAGCAATATGGGCATGCTGTCACTTTCTCCTTTTTCTTTCGGAGTCATGGGTCGTT
ATTCACTAGTGGGTAGTTGTGTAGGGAATTTCATAGTTTAGTTTTTTGGAAAATATATAT
AGTTTAAAAGGCTAAAGTTAGATACCTTCTTCCTGAAGTAGATATTGCCATGCCTATAAA
TGAAGGGGTAACCAAGCAGCTACTGGTTACTTGTAGCTATGGCAGTTCAGATGACATGAT
CACGCCGTTTTGGGGGATGTTTGCGCAACCATCAAACGATGGCAGGATGATTGTGGTGGA
CATGAACTCAAGGTGCGTTAATCTCTACTAACTTTTGAATCTTGTAAACAGTCTTGTTTT
TAGAGTTCCACCGAATTTTATCCAAGTGTTTTAGGTGGCTTATTTTGAGGAGCTACATGG
TGCTTGTTCGTTGATCTGAATGATAACAAGGATGATTCCCACAAATAACTTTTTATGGGT
CGTATTTCTCCTTCCCCCTTTTCCCACACCTCCTCACTCCTACCTGTAGTATGATGATTA
CTGTATGCCCGGATGGCAGAAAAGTATATCGTAACCAATCCTAATCACAATTTTTGTGAT
GGATCTGAAGAAGGTGCCTGCTTTGTTTCTCTATAACAGGTCATCTGTGACTAACTTCCA
AAAATAATAATTTATTGTGTATTAATTTTCAGAATTGACCATCCGCGTAACATATTGGTC
CAATGTGATTGGGTTTTCTAGCATCTGCTTTAGTAGTTTAGGCAGCAGGTTCGCGAACCA
AAAGCTTTCACATGATTGCAGGACTGTAGGAAATTCAGATATCTCAAATCTAATCAGATT
AGTAAAAGACTATGGTTATTGTAATGTATTTGCGCTGGCTGGAAACCTGTAATATCACTT
ATGTTGTTATTTACTTACTTGCAGAAAGACAGTCGGAAAAACCCGAGGGTAAGTATAATC
GCTTAGGTAGTACTTGACATGCCAAATGATTTTCCACTAACATCAATTATTGGCTATCTA
AAAATGCCCCTATTTTTTGTTTGCATGTAATCAAGATCTTCAACAAAGACAGCTAGCCAG
CCATGAAGATTACTACAATCATGCAGTTTATCTTGGGGCTCATTGTTTGCAATGGACATA
TCTTGATCTGTGGCTTCCTGTATGGAAATGAGACAGACCAATTGTCACTGCTTGAATTCA
AGAATGCAATCACCCTCGATCCAAAGCAATCCTTGATGTCCTGGAATGACAGTACCCACT
TTTGCAATTGGGAAGGTGTTCATTGCAGGATGAAGAATCCATACCGTGTCACTTCTCTTA
ACCTTACAAATCGAGGTTTAGTCGGGCAAATCTCTCCTTCACTTGGAAATCTTACATTCC
TAAAACATCTACTCCTACCAACAAATGGGTTTACTGGGACAATTCCTCCATCCCTTGGTC
ATTTGCATCGCCTTCAAAACCTATACCTGAGCAATAACACACTGCAAGGGACGATACCTA
GTCTGGCAAACTGTTCCAACCTCAAGGCTCTGTGGCTGGATAGAAATCAACTAGTCGGAC
GAATTCCTGCAGACTTGCCTCCTTACCTTCAAGTGCTGCAACTTTCAGTTAACAATCTGA
CTGGAACCATCCCTGCTTCTCTTGCCAACATCACAGTGCTAAGCCAGTTTAACGTTGCGT
TTAATAATATTGAGGGCAACATCCCAAATGAGATTGCAAAGTTACCTGCGCTCCATATTC
TGAACGTGGGTAGCAATCATTTGACAGGCATGTTTCAACAAGCCATCTTGAATCTTTCTA
GTCTTGTTACCCTTAACCTTGGTCCAAATCATTTAAGTGGTGAGGTACCATCCAATCTTG
GTAACTCTCTACCGAATCTCCAAAAGTTCGCATTAGCCGATAACTTCTTTCATGGAAAAA
TCCCATCTTCTTTGATCAACGCATCCCAGATACACATTTTTGATATATCAAAAAATAATT
TCACAGGATCGGTGCTTCGGTCCATTGGCAAACTTTCCGAACTCACATGGTTAAACCTTG
AGTTCAATAAACTCCAAGCACGCAACAAGCAAGATTGGGAGTTTATGAACAGCTTAACCA
ATTGTACTAAGCTAAATGCCTTCTCGGTAGAGGCGAATCTTCTAGAAGGCCACATACCAA
GTTCGTTATCCAACCTTTCCATTCAGCTTCAAAATCTATATTTGGGGCGGAATCAATTGG
AAGGGGGTTTCCCTTCTGGCATAGCGACCCTTCCGAACCTGATTGTTTTAGGAATGAATA
GCAATCGATTTACAGGTACCATTCCCCAGTGGTTAGGAGCTCTCAAAAATTTGCAAATAC
TAGGTTTAGCTGACAACATCTTTACAGGGTTTATTCCATCCTCCCTTTCCAATTTATCTC
AATTGGCCTATCTCCTTCTAGACTCGAACCAATTTGTTGGCAACATACCACCAAGTTTTG
GAAAGCTTCAAAACCTTGCAATATTGAACATGTCCAGCAACAATCTTCATGATTTAGTAC
CAAAGGAGATCTTTAGAATTCCAACACTAAGGGAAATTTATTTATCTTTTAACAACTTGG
ATGGACAACTTCCTACCGATATCGGTAATGCCAAACAACTTACAAATCTAGAACTCTCTT
CAAATAGACTATTTGGAGATATTCCTAGCACTTTGGGTGAGTGTGCAAGTTTGGAAAATA
TCAAGTTGGACTGGAATGTTTTCAGTGGAAGCATCCCCACTTCATTAAGCAAAATAAGCA
GCCTAAAAGTTCTCAATGTTTCCCACAATAATATTACTGGATCAATTCCAGTGTCTCTTG
GCAACCTAGAATACCTTGAGCAACTAGATTTTTCATTCAACCATCTTGAGGGGGAGGTCC
CAAAAGAAGGAATCTTCAAGAATGTTACTGCTCTGCGGATTGAAGGAAATCATGGGCTTT
GTGGTGGGGCTCTGCAGTTACACTTAATGGCATGTTCTGTTATGCCTTCAAATTCAACAA
AGCACAATCTGTTTGCTGTACTCAAAGTGTTAATCCCAATAGCCTGCATGGTCTCACTAG
CTATGGCCATACTTCTCTTATTGTTCTGGAGGAGGAGACATAAGAGAAAATCCATGTCTT
TGCCATCACTTGATATAAATCTTCCCAAAGTTTCTTTCAGTGATATTGCTAGAGCAACAG
AGGGGTTCTCAACGTCCAGCATAATTGGAAGAGGGAGATATGGTACTGTGTATCAAGGAA
AACTATTTCAAGATGGAAATTATGTTGCCATAAAAGTCTTCAACCTGGAGACAAGGGGAG
CACCAAATAGCTTCATTGCAGAATGTAATGTCTTAAGAAATGCACGGCATCGTAATCTGG
TTCCTATACTAACCGCATGCTCAAGCATTGATTCTAACGGAAATGATTTCAAAGCTCTAG
TGTATGAGTTCATGCCTCGAGGAGACTTGCATGGATTACTGTACCCAACTCAAGACTATG
AGGGCTCTTTAGATTTGATACATATTACAGTAGCTCAAAGGCTAAGCATTGTTGTGGATA
TAGCAGATGCACTGGAGTACCTACACCATAACAACCAAGGAACTATTGTTCATTGTGATA
TGAAGCCTAGCAACATTCTTTTGGATGACAATATGACAGCCCATGTTGGAGATTTTGGTC
TTGCAAGGTTCGTAGTTGATTCAACAGTATCATCATCTGATGACTCATACTCAGCCTCTT
CAATTGCGATAAATGGAACTATTGGATATGTTGCTCCAGGTAATTCCAATTTTCATATTC
TCATATTGTATTTATTTATTAAACTGAGAGTAATTTCTGCTCATACTAACACCAGAATTA
CATTATTGTTACATGTGAATTACAGAATGTGCAACAGGTGGTCATATTTCGACTGCTAGC
GATGTCTACAGCTTTGGAGTTGTTTTATTTGAGATATTCTTACGGAAGAGGCCGACAGAT
GATATGTTCAAAGATGGACTAAACATTGCGAAATTCGTTGAAATGAATTTTCCTGCCAGG
ATATCAGAAATTATTGAACCTGAATTACTTCAAGATCAGCTTGAGTTTCCTGAAGAAACT
CTAGTGTCCGTGAAGGAAAGTGACCTCGACTGTGTAATTTCAGTGCTAAACATTGGGCTT
CGCTGCACCAAGCCATACCCGGACGAGCGCCCCAACATGCAGGAAGTGACTGCAGGGCTG
CATGGAATCAAGGAGGCTTATCTCAGAGGGTACTAAGGTAATCACCATTGTTAGTGTATG
GTGCTACATTTTTATTTAGAATCTACACAAGATTTTATCAGTAACTACATTTTCCAGCAC
CGTATTTTTGGAGTTTTTAGAGAATCCATTGTTTTTTTAGAAACCATAGTTTTAAATACT
TTGATGCATTTGGTGTCAACAATAACTGAAGTTTTATAAACTGTAGTATTCTTGAAACAG
TGTTTTTTGTGCTGTATTTGACCTCTTTTTTCTAAACCAAGAAACGCGAGCGCCTCGTTG
TTGCTCCCCTGCTGTTTTTTCCAGCGAGTCCATGTCCTTACGGCCGCTGTATCACCTGCG
AACCCATCAGCATAAGTTTTTCGAGTGAGGTATCCAATCAGTATGTAGATTGGGTTTTCT
AGGAGAGATATCCGGTCAATTGAGCCCATTAGGCATTAGCAAATTCCACGCGCGCATAGT
GTGGTACAATCAATTGCTCCTTCAACTTTCCAGGTCAGCAATCAGCCCACCATACGGCGC
TGCCGGGTTTCCTGTTCCCACTGGAGCCCTCGACCATCGCGTCGTGTACACTGTAGACAT
CGTTCGTAAAGTGCAGGAGGCAGGGAGAGACTAGATGAGGATGTGTTGACATGGTGCGTG
GCAAGGCTGCATGCAGCCGGTGGCTGTTAGCACACACTGATTAATCCGGTCATGTAGCTG
AGTTAGGTTCAGTTGTCATCCTTGCATATCTATCTGTCAAAATTACGGCAAGACAATACG
GGCTAAACACACACACAGTATTACCAAAACTCTGAAAAATGACAGTTTTGAGAAACCGAA
GTATTCATTGTCCGGGCGTTGGAATACCTAAGTTTTTGGGATATTATACTTTTGAAAAAA
ACTGTGCTACCAAAGTAGGACTGTATTTGCCATTCTTTTCCAAATAAGAAACACTATTAT
TGTAACTGGCCTGAGTACATAAGCTGCGATGTGATCTTGCAGTTTGCTGGCAGGTGCGTT
CTTGGAAAATGAATAATGGGAGTAAATCACAACGTGCTGGGTGGGCAACACGCTCTGCTT
GTGCTGCTCCTCAAGACAGAGCTTCCTCCCTGATGATGGTCTCCCATGCTGTTTGGGTGA
TGGATCTGTTCAATTCGGGATAACCTCTTGACTGTTGTGATCTAAAAGATCTTATATTAG
TTTGCAGAGGGAGTACTTTTTTGTGTGTGGAATCAGCTGACCTTTATTAGTAGTTTGAAT
TAAAGTTACATGGTTGGCATGTTGCTAGTAATGTAATAGTATGATGTAGTGGTACGTCCG
GGCAAGTATTGTAGAGCTGACAACGATATTTCTTACAGCCTAAATCTACATCCTATATCT
GTTTTCTTGATTTATGTTTGTTGTTCGAACACTTCATAAATTGAAGTTTTGCGGTCGAAT
TCCTCGTCTTATACACTATTTTGTTGTACAGCAGTAAATTATCCAAATCCCCTGTGTAAT
CCAGTTTGGAGTTGATTCCCACTTCACCTGCACCAAGTATGATGCTTGTTACTAGCTGTG
ATTGTTTGATTCTCTGTAGATCAACGTGTGCCTCCAATACCCTTCCTTGTTCCTGATAAC
AAAGGCCCCGTAATCTATACCCCTAATAATAAAGCGGCTATTGCTTTCGTTAGAAAACCC
ACCGCGACATTTTTATAAAAAAGCCCTTGTAATTTTTATTATTCAACTCGCGCCTCATCA
TTTATCTGCAACGCAAAAGGAAAAACGATTCGTTGCAAAAATTA