morexGenes - Barley RNA-seq Database

Contig contig_2548468

Source Contig contig_2548468

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2548468 (2716 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2548468

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37473	2	738 bp	AK354993	Available	Available	None

CDS Structure of MLOC_37473

Contig Sequence (2716 bp)

>contig_2548468 2716 assembly3_WGSMorex_rbca.fasta
CGCTATGCGACGTCAGCCGGCCCACCCCCCCCAGCGCGCCCCGCGCCCGGGCCGCCGCCG
CCCCCCCCGGGGCGTGCCTCCTCGTCCTCCTCGCGATCGCCCACGCCGCGGGGGCGGCCA
GCCACCACGCGCCGGCGGCGGCGCCGGCGCCGGACTGCACGGAGGCGCTGATTGGCCTCG
CCGACTGCCTCGACTACGTGTTGCCCGGCAGCAAGTCGGCTAAGCCTTCCAAGACCTGCT
GCGGGGAGGTGAAGACCGCCGTCGGCACCCCCGCCACCGTCAAGTGCCTCTGCGAAGCCA
TGGCCGCCAAGGAGACGCCCATACCGATCAACATGACACGGGTGCTCGCTCTCCCCGGCG
CCTGCGGCGAACCCGCCTCCGTCTTGAACAAGTGCCATGGTGAGCACTGCACCGCGCCTT
TTCCCACGGTCTTCTTTTCCTCGGCCTGGCTAGAATCTGCTTCCTTCACAGCGAGAAGCC
AGACCTTTCTTGTTTTACTAGTAGGGAGTTCATCGTTTCTTTGGTTCCTGTGTGAGATTT
ACTATGATGGAAGATCCCGATCCCTGTTGTAGAGATTTTTGGTTGGGTTTTGACCTTCCT
CACCTCTTGTTTGCTTGCAGCTCTGCCGGGTGGTGCTCCTGCTGAAGGTAAAAAGCTCTT
CTCTATACACATCATCGTCTTTGTATTGCATTCGGGTCTGAAGTCTGAACAAACAAAAGC
TTCTTTAGTTACATATGAAATTTAACCGGAAAAAAAATCTTTCTTAGTTGTCTTTCTACT
AAAAAATTGGCTCCAACCCTTGTGTTTGTACAAAAAATTGATAAACAAAATCAAGAAAGG
AACATCGTTATTTAATAAACGTACTCTTCATTTGGTCCACAAGAATGGCATAACAATGGG
GCCGCCGCAGCGTTTCGCCGTCCGTGAACACAGCTGTATATTACGTCTTCTAATAAACTT
TTCCGTCGGCTTGTATCTTTGCGAGCCATTGCATGTGCGCTCTGAGCCTGAGTTCTGGCC
GGTCAAAAGATACAGACAAGAGCATACAGGCTGAAAGAAACTTTTCTGCTCGGAGAAAGC
ACAAGTTGATATAGGAAATTTGGAGACGAGGCAGTCACACGCTGCGATGGACAAAAACCC
ATGCTCATGGTCTTGTATGTGCATCGAGCGGTTCATTTCTTGGCCGTTTTTTAGGAATAG
CACAAAATGCTTTGAAATTTTGATTTTGGTAGTACAGTACAAAGAAATCGTTTCCTTCTG
GTAGGTATACTCCATTACTGCTCTTGGGACCAAATTGCGGTGCAGATGTTGCCACTAGTT
CGTCCACTAGTCCACTAGTATCCAAGGAATGCTCCATCATGCCACCAATACAGACATTTC
TAGCTAGCTGCCTGTGCCGTGTCTTCTTCCGCGGTCTCATTGAAGAACGCGGCTAGCTGA
CAATTGTTTGGTTTACAGCTATTCTGATAGCTACTACAACAACAATGATACTTGTCCAAA
CTGCAAAATTACGGAGCATGCGAACGCTACAATCACACGTGTCTCGAGACAGTTTTTACA
TTGCAATAGCATTTATATATATGCCCGTGTAAATCTCTTGACAATTCTTGTCGCTGCAGC
ACCGGCGCCTTCACCGTCCAGTGGCAGCGCGGCCGCTTCGCCACCGAAGGCGAATGCGTC
GGCGAGGTCTCCCGCAACCATTCTCGTGGCAACCGTCGCGGCTTCGCTGCTCGCCTTCTA
TTACCTCTGAGGACTGGCATCTCAGCCTCTCTCACGTGTTTATGTTGCACAAGACTTTGT
GACTCTGTGTTGCGCGGTGTCGTTGTAATCTGAGTTTACTCTCTTCATCTGGATGTGCTC
TGAATTACTGTTATTATCATGTTTTTTTTGAGACAATACTGTTATTATCATGTACTCGTT
GACTGAATATCGAGCAGTAGTAAATTGCGATGTACCGTGGACTGAATATTGAGAAGTCGT
TGCCTGCCAGTTATGACACTTGGTTGATTTTGGAATGCGCAGATAATCTGCTACGAACTA
CGGTGAGGGCCGGGCCCATAGTTGTGTAAACTGTATAGTCCATACAGGGCCCAAAAGTTT
TTAGGTAGGCCTTGTGTTAGAGAAAAAAAGACATATGGGCAACTGGGTTAGTGGGCCGCT
GGGAGTTGCTCCCGCTGGAGGGAGGGTGCGACGCTGCCGTTTTCTTTTTTTTGAATCAAT
CGATCGATCGCTGATCCCGCTGAGCCAGGCCATCGATTGCTGCGAGGGTGTGACGTGCCC
TGCGGCCGCTTCCGCTTAATCCGGATCGACGGCTAGAGGCAGGTCGCCTGCTCGTCGCCT
TGTCTCCTCCTCCTCTGCTCGTCGCCTCATACAAGACATGCCCCTTGACCTGCCACCACG
TCGCCTTGTCTCCTCCTAGTTGCCTCGTCGCCGTAAAATTGACGAAAATGAACTCTGGAC
CGAAAGAACTCACAAAATGAATCCGAAAACAACCGGCCGACCCTTTCGTGTGACGTCTCA
CACCTAGGCGCCACATTACACTGTGTGACGCCTAATTCGTCGGCGCCATACTCCCGGTCA
CCTGTCAGAGCTGACCTCCCCGACAGTGCGACGTCGGCGCCACACTCCCGGCACCCTGTA
AAGGGTGGCGTCGAAGGCGCCACACTGCGACTTATCCAGCCGCGGCCCAGCCCCCCTCCC
CCACCCCCTCCTCATT