Map Locations of contig_2548395 (8914 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2548395

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_37434 3 3329 bp MLOC_37434.2 Available Available LOC_Os07g28440.1, FRAME:+1, EVALUE:6e-87, 13107.m02847 protein SNARE associated Golgi protein, putative, expressed
MLOC_37436 1 1020 bp MLOC_37436.1 Available Available None
MLOC_37435 1 4671 bp MLOC_37435.1 Available Available None





CDS Structure of MLOC_37434






CDS Structure of MLOC_37436






CDS Structure of MLOC_37435






Contig Sequence (8914 bp)

>contig_2548395 8914 assembly3_WGSMorex_rbca.fasta
ATTGGGCGAGGCGCGGCGGCGGCGGCCGAGCGGAAGCTAGGGTTGTAACCTAAAAACTGA
TACCATGTATGCTGATGGAATTGCACGATGTATTGATCAGGTGCANNNNCACGTATATAT
GATGTATAAGGTGGGCCACGACCTCAACTATACAAAACTAGGAGGTGTTCGGGCCAAATA
CACAATATGCACACCAAATACACAATATGCACAGAACACATATACTCAACATTACAAAGG
AAGGATGGAAGCAAAGTAAAAAATCACCTGTTTTAGTTATAATAACATTTACCTTCAATT
TTGCAAACGAGATGATTTAATTTCTGTTTTGAAGCTAAGACAACTCTGGATATAGAAACT
TCATAAAAAAGTAATGCACAAACATAAAGGATGGATGCATCAGCACAATCCTTTTTACAT
TTTTTTTGAAAGATAGAAAATGATATTAATGCTATGGGAAATGTTTTAACAAAATACTAG
CAAACGTGCCTGTGCGTTGCAATGGGAGAAAACTTATATAATATAATATGCTAAAGCTTG
CTAGGACAGAACATCACATTGTGGTTAACAACCTCCAAAGGCACAAATATAAAAGCTCAC
TCTTCTAGTATTCATACCTTTTGTATGTATCCAACACACGAGGGTTAAAGTTCTCAAAGT
TCATCTGAAACTCTTCAGTTATGACCTTAATCGTGAGAGATGCTAATTCTAACAACATAT
CTGAGTCTGACAAAACCTTGAAATATGTGGTAACTTAAAAAGTTACTTTTCCCAAGGATA
GCAAGGTCCTGTAAATTTGCTTCGATGTTTTCTCAAAACCAGGAGCTTTAACAACACAGA
CCTCAATGGCACATCGAGTAAGAACAACATGGCATATAGAAGTCAGAAGAAAAATAGGTT
AAATGTACCGACCTTCATGCGTGCATGTAGCTTTTTAAGAATCAGAGAGTCCAATGCCTT
GCTTTCTACGTTTCTAGATCTTCTACAACCGTTTCTAGATCTTCTACAACAGTCAGGAGA
GGCTTTTGCGCATATAGTAGTCACTACAGCACCGAACACCACAGTGACACCATCTTACTG
AAGTCACAACTTAGTTGCGTGACTCTCCCCACAGTGACACCATCTTACTGAAGTCACAAC
TTAGTTGTGTGACTCTCCCCAGTTCCAAAACCCAAATCTGGATTGATATAACATATTTGT
GCCCATGAATCCTATGGATGGAAAAAGATGGACATGACACATGATGAAGTAATTCTCAGT
TCAAGTATTCAAGTATATGTCAGATAAAAAAACATCACTTATCTTTAAAGAAATTATAAA
GAAACTGCATGATGATATATGCAGAATTGCAACAACATTCTCACTTAACCTCCCCCAATG
ATGGTGCTGGCCGTGATGTGACTCTGCTGAGGAGCGAATCAAGGAAATCGTGGTAGTATG
GGTGGAGCTCGGTGGCCATATCGAAGCGGCTTTAGCGGAGGTGCGATAGCAAGAGGCAAT
CTCCATTAGCTTGAGGTACACTGTGAGGGAGGAGAGTAGCCCGGCCGCCGCCGGCGGCTA
ATACTGAGCAGAGTCGTAGTTGGACACCAGCAGGAGGGCCGGGCGTGGTGGCATCATCAT
GGTCCGATGCTTGGGGCTCTAGAGGCAATGACCCAGGGCAGAGCGGATTGGCGTCATCTT
GCCTCGCCGGTGTCTTTGTACCAAAGCTATCGGTCGTTGGCATCCACGAACGCTCTCCAC
ATGGTCCTACATCGCTTGCTCAAGGCACGACCTCGGACGGCTGAAGCTGGCTTGCCGGTG
CTGGCGCGCCATGGTCGAGAGACCGTTCCGTGAAGCTGCATCATAAGCCCATAACCACGT
AGCATGGGATTCGATAGTCGATATGGAGTGCTGCATGTAACCTCTTGAAAAAGCTGAGAC
GTCTCAACCGTGTTCGTGATCTGGTTGCCTGGTTGCACATGTGTATATGTCTCTGGCTCT
ACCACGTGATCTTTCCGGTCGACTTTAATCGGGTCTAGGCCCCCTTGACGTTAATCGAAG
CAGCCCTGAGCCCGGCTGGTCAATGCTGAGGCCTCTGGCCAGGAAGAGCAGGGGCCCCCG
CGAGCATGTGCTGCGCGAGACCGGCGGCGGCGACATCGACGGGTTCTAGTCCGATTGATT
CCTGACTCGTGCTTAATATATAGTTGTGGTTCAAGGAATTAGATGTGTAGTTTGTGTTAG
AGATAGTTATGGTGGCAGGAACGATTGCATTAAAAGTGGAAAAATGGATAAAAAAAGAGG
AAGGAGACCGGGTCTCTTGCGACACCGGGTCGAGCTGCTATGTGGGGTGTCGAGACAAAG
GCGATAGATCGAAAGGAGACCCGGTCTCAGCAACGCATCATGTTTTTTTGGGAAGGAAGG
CCCGGCCCAATTGGGAACTCAATTGACATCCCAATTGACAGTGCCCAATCTAATAAACAA
TGGAAAACGCATGAAAGAGAAAATAACGCAAGGAAAACAACTAATAACATATGGAGAACT
ATGAAAGTCTCCTTCATTTTTTTTTGAATTGTTTGGATTGCTTACCACGTGTAAAGATGA
AGGATATTGATGATTTCATTCCTGAATGACCCTTCAAACATGTAGTGTTTTTTTCAAGTG
TAAGAGACAATAGAATGTATTTTGTTTCATAAAAGAAAGATGGTAGATGTATTTTTCCAA
GAGATAATGTAAATCCTGATGAGGGCCCAAATTCTATGTTGGAGATTTGCATCACTGTGT
ATGAACTGTCAAGATTCCATAGGATGCATGGGTAAGAGAATATCATTATTCAGAGCATTG
CACACCCTGACTAAAAAACAATGGACATAATATGCAAGATGTAACCACAGGCAACACATT
TTGGATTTAGTTTCTGTGTAATATAATGAGTATAAGATCTGAACCGAAGGGGGTGTGCTA
CAAACTGTTAACACCATACTGTAATCAATTAATTTGGGGGCATTTAAAGTCATGTTTCTA
CCCTTAACAAAGGGAGTAACTCAAGAAAATGCAAAAAATGACAATCCATGAAGTAGTCAA
TTGAACTTACCTTCTGAAATACCTGGCGTCCGTAACAGCCCATGGGATTAGAGAGTTGTG
TCATTAGTGGAAACTTGCAGTAGTGGTGGGATTAGCAATAGTAATACCATGAGGGGTTAG
AGTGGTGCTACCGCAACTATGGCGTGCACTTGTTAACTCTCATGTAACACTATTTCTGCC
TATCTGAATATAACGAATTATCATGCATAGAGCTCCAATCGATACTTCAATTTTTTTGCA
AATGAAACCAAGGAATGCCTTGGTACAACATACACGGTCATGATTTATGATATAGATATA
TAATTAAGTACGATGATACATAAAATGAATGCATGTTGGGCCAGAGATGAAAAGATAAGT
ACAATAACACGCAATCTTATCTGGATAAAGAAACCTAGAAAACACATTGGGAGAGCACAT
GCTTTCATGGCAGAACAAATCTGCACAGGCATGCAGATCCATAGGTTTGACAAATACAGT
ATCTAACATTAGCTCGTGAATCATCAGTTCTGCGTTGCCAACCAATTAGAGGTGGTACTG
AATCCCATAGAGCTAAGATGGTACAAACAATTCATTACCAAAGTTTATGCAAGAAAAATA
TTTTCCTGGGATGCGCAATAATTACAATACATGGCCAGTGAGGACGCATTTTCATATTTG
AGAGAGAAAAGAGACATCACACGATAAGATAAATATAAGAGATCCACATCTCCGAAGAAA
ATCAAGGAAAATGACCATCCCATATCATTAGCAAACCTTGTTGAAATATAAGCCTATAAT
ATATACCTCCCCAGTTCCAGTAGTCGTGTACAGAAACAGTTCCTGCTCCTGCAACTTTGA
TATTGGTCTTGATCGTAGCTGATTGAGATGACCTTGATCACTTAACTTTGATATTGAATC
GGACATACTTGCCTTGGACCAGTACCCTGTGTCAAGTAGCAAAATCGGAGAAGTAATAAA
CAATTTGAAGTCACCAGCAGGTCTTGGGTGGATCATCAATCCTGATAAGAAAAAGGACAG
CGACCATAGTCCCCCCCCGCCGCCGCTTCCAGAAACCGGCACTCCCATCTTCCACACGGG
CAATGGAGAGATGATGGCACCGGCAACGACTCCTCTGGGCAGGGCTTGACTGTACGTTCA
GGATCTGTATTGCGCAGCGCAGCCAGTCACACATAATTTCTGCGCATCCAATGGCGCGGC
GGTAGATCGTTGGCAGTCGAGACCCATGGAAAGGAGCAATGAGGCATCAGAAGGAGATGA
GAGCGGAGGCACGGTGCACCACTAGGTAGCCGGCGGCGTGAGAAGAGAAGGCGGAGGGAC
TGATAGAGGGATCACACATACCCCGTTAATTAGAAACTGCACGTGTACGTAAAATTGAAT
AATTTCACCTAATCACAAGATTTTGAATTCTGAGAGGCAGACCTTGAAGTGGAGGACAGG
GTGAGCTCGATAGGGGTCCTCTTCAACGCACAGCAGCCGACGCTCAATGTGGCCCTGGAG
GGCGCGTCAGTGCACGGTGGCGGCAGGGACAGTGTTGCATGATTACTGAGATGGAATGGT
TGCATGTTGAGGTGAGGTGGATAGCTTGCATGTCAAGAGAAATAGGATAGTGGGGATGTA
CTATTTAGGTATTATAGATATGGATATTTAATGGATTTCATCTGGAAACCAGTTCAAATG
ATGGTTGAATCAAATCAGGATGTCATTGTTGAGTGAACAATATTGGAAAATTGTTCTGCC
AATAAGAAAAAAAGCCAATGCCTTAATATGTTCGCTCATTTATGTAACCCAATATGTGGT
GTCAGCTTGATGCTCTGGGGGTGTAGGCGCCTCCTCTAAATGGTGGACGTGTAGGGACAA
TCTCATAAGACTATTGGATCCTGATATGTTTGGTAATCAAGAAGCCATACTGTTTATTAC
CTGTACCCACTTGCTAGTATTATCTGCCCTGGAGGGATTTATTAGATGCTTAATTTAGTT
CGTTTACATGATTATGAGGTTGTTTTTATCATAACCTGTTCAAGCATGGTACTTTGACTA
CTAAATTGTTGGTTTTTCCGAGCTAGACGCCACAATGCCCACAATGCGTTTTCTTGTGTA
TATTTAAAAAGTCTCAACATGCCTGGTTTTTGAGGTATGTATATAATGCATCAAATGAAG
TCAGTCTTGGTAGTTGTTCTGTTTAAGCAACTGCTGAGGGGAAAGGAAATCAGCCATGAT
GAGTGAATACATTGTCCTAAAATCAACTGGTAGGAATGATATTCAGGCGAATAACACAAT
CATATTCTCTCCATGAGTCAAATATTGTACTCCCTCCGATCCATATTACTTGTCTTAGGT
TTTCTAGATACGGATGTATCTAGACACGTTTTAGTGTTAGATACATCCGTATCTAGACAA
ATAGGACAAGTAATATCGATCAGAGGGAGTAAATGATTAATGTAACATGCTATCAAACTC
CAGCAAAGGGCCAACTTCGAAAATAACTATTTCTCTTAGTCAGGTTCAGATGGTAGAAAA
TAAAGAAAGCAACAATCTCTTAGGTAGTAACTAATACTCCCTCCGTCCCAAATTACTTGT
CTTAGATTTATCTAGATACGGATGTATCTAACACTAAAACATGTCTAGATACATCCATAT
CTAGACAAATTTAAGACAAGTAATTTAGGACGGAGGGAGTAGCACATTGGTGTGATTTCG
TCAAATTACTCATTTGTAGCAACATGACAACATATATAAAAACAATTACTGAATTGTTTG
CCTCAGAATATTTAGCATACAGATGGATGATGGCGTGACTCTGCGAAAGGGTCTAGAAAC
CTTAATTTGATTCAGAGGCCAATGTACCATATTCCAATATTTGAAATAGGACAGAACTAT
CCAGTAGAATATACTGTGCCAGGTACTTCCTGTCTGAAAATACTTGTCGGAGAAATGGGT
GCATCTAGACGTATTTTAGTTCTATATACATCCATTTCTATCCATTTCTGCAACAAGTAA
TTCTAGACGTATTTTAGTTCTATATACATCCATTTTTATCCATTTCTGCAACAAGTAATT
CCAGACGAAGGGAGCACTATCTATCCCTTTGAAGGAAGAGTATGATGAGATACTACATGG
ATATCAGAGTAGCTTTTCAAATGACTGCAAGCTTTCCTAATTGACATAAAAAGTTGGAGA
GACTGAATCATACTAACAGCATCTATGCAATCTAGGGTCTGAATCAGAGACTCCTCGTAC
ATATATAAATAACTACGCATAGGGCATAATGCAGATGTTTCTTTTCCTACTCTACCAGGA
CACACCTCTGGTCCTACTGGACTATATATCTTGAAGTGGTACCTAAGGGCCTGTTTGCAC
TCTCTCTGCTCTCTAACTCCGCTCTGGAGGGGAGCAGCATCCAGTTCTAATTTGGGGAGT
GGCTGAAAGGGCGCTCCGCTCCGTACTGAAGGAGTGGAGGGTTGCCGAACAGGGCCTAAA
GCTCTAGCTTAAAAAATTTCAAGACATGGAAGTAGAAGAGGCAACCTGGACTAACAGAAC
TCATCTTCAACTATTTTTCACACCATGAAACTAACTGTGCTTCTTAAATACTCCCTCCAT
TCCTTTATGTAAGGTGTAATTATTTTCAGCACGGTAATCGATGCACGTAATTATACACAT
GCTAGGACGAAATTAACCTTGGCTATATCGTTGATTAGCGACAATTAAATCATTTTGTCT
AGGAAAGTAAGAGATACACGCAATCAGGAGAGAGATACTTTCCTTTTTCTCTTTATAAGA
AGAGATGCACGCAATCAGAGGAGAGATACTTCCCTTTTTTTGAAGGGCTAATGACGGAAT
TATGAGGAATTAAGAGAAATGCACCTTACATTGTGGAATTAAAAGAAATGCAACTTATAT
AAAGGAACAGAGGGAGTATGTGAAACATCAAGCTAGTTATGCATCTCCTCTATTGTTAAG
GGAGAAGACACCGCTTTATCATAAATCCTAAGAAAGCAAGTTCTTCAAATCAAACAGCCT
TTATCTCCTCTATTCTTATAGGAACGTACATAGGAGAAGTGGCTAGGATTTGACAGGAGT
TTTAGAGAGAGCACTGGACGGGCGGAGAGAAGTGAGTTATCTAGAGAACACCGGACACAT
GGAGAGAAGCGAGAGGATCGAAGAACCAAACTAGATAAATATCAAGCGGTTAGCCGGTGA
GAACGCAATCAGCACAGGCAAATTGTACCCCTACAGATCCCCAGAATTACAGGTGTCTCC
CCCTCGTAAATCAGTCAGATGCTGAAAAAAGTCCTAAAAGGAGAGAAGGATTCCTACCAG
ACGTAGGGTCTTGCTTATACTCTCATACCTGGTTTGCAGTTGGGTGGTGTAATTGCTTTT
TCTTAAATGGCATGTCTTCGTATTTTCGAGATAATTTTGGTTGTCGCCAACATCATGGAG
AAAATGTTTACAACTCTGTCCATCATTTCTAACCAAATCAGCTGATCCCTTCCAAAAGTT
CATATGATTAGGTCAGAACAATGTAAAATGTCGGAAGGATAGAGCACATAAACTACAACT
GTGCTTGCATTTGGATCCTGCTTGCTGGTGTTATCTGAAATAAATTATGTGGGCAAGCCC
CCCATCCCCACCAAGAAGTTCATGATCATAAGGATGATGCTTAGCTGCCTATTGATGATC
TTTCTCTGAATCAACCTCAATATTACAAATTTTCATGCAATTGTAGACTGATTAACATCT
CATAGTTATGCTACATGTACCAATTTCAGTGAATTATCTTGTTGCCCTCTTAAACAGACT
GCCCGCACAATTGCATGTGTTTCTGTAGCAGCTTTTGATTCTAAGCTATCATGCTAGTAT
GCTCTTGGTTTGTTGCTGACATTGTTTTGCATATTGCTATCCTTCACAGGTGGTTGTGCC
GATTATTGACTGGCAATCAAGAACATTCAGCCGACCAGTTATTCTTCTAATATGTTTTGG
TGCAATCGCTTTTTTCCCAAGTGTCTTGATACCTTCTTCTCCCTTTATGTGGATTGCGGG
GATGACCTTTGGATATGGTTATGGCTTTCTGATAATTACAACGGCGATGAGCATAGGCAT
GTCATTACCATTTTGTATAGGATCTGCGTTCCATTCCAGAATACACGTGAGGCTCTCAGT
CCCATCTTTTCAGCTAATGTTCATACTGTCTTCATTTTTTTTTGGAGATAATGGTTGATG
GTTGTCATGCAGAGATGGTTGGAAAAATGGCCGAAGAAAGCAGCTTTTGTTAGACTTGCT
GGTGAAGGAGATTGGTTCCATCAGTTTAGGGCAGTTGCTTTACTTAGGATTTCCCCGTTT
CCATATATAGTTTTTAACTACGCTTCCGTGGCTACAAATGTCCAATATTGTCCATATATA
GCTGGTTCAATGGCGGGAACCATACATGAAACCCTCCTTGCAATCTATAGGTTTGTACCT
CTAACACATGTTGCCTTCTGTAGGTAGTCAGTCAGTATTGGTGTGGTTATTGAATCCATT
TGCAAATAGAATGAGTTACTTGACTGTATCTCACCCAATCTGCTATTTTATGAGATCGGA
ATGATGATGCGCACCTATACCTTCTGCTAGCATAAATTTCATTAAACATCCTGTATGATT
TTTTGCCAATGCAAAATCTGCTTTGGGAGTTTAACTTTGGCCATGGAGTGTAGAAATTTT
GTGGGCACCTTTCTTCATTTCTAATCTTCTATGCGATCAGTTCTAGCTTTTCAGGCAGCA
CATCCCTCTGAGCTACAAATCCAAAATTTCCACCTGGGCTCTTGGTTTTTTTTTTGGGGT
GTGTGTGTGTGTGGGGGGGGGGGGGGGGGGAATA