morexGenes - Barley RNA-seq Database

Contig contig_2548323
Source Contig contig_2548323
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2548323 (6571 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_2548323

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37400	4	4098 bp	MLOC_37400.1	Available	Available	LOC_Os08g39490.3, FRAME:+2, EVALUE:0.0, 13108.m04215 protein expressed protein
CDS Structure of MLOC_37400

Contig Sequence (6571 bp)

>contig_2548323 6571 assembly3_WGSMorex_rbca.fasta
GGTCCTCGTCGCCCCTTCCTCCCCCGTCATGGATGAGCTATCCGCGAGCCTTGAATCTCG
CCACCGCTCGCCATGAAGCGGTTGAGAGAGGGGATGCAGCTCGCCATGTCGTCGGNTGTA
GCAAAATGAAACACCGGTTGTAGCAAAAATCGCAACGCCATGTGTGGTGTAGCAAAATGC
GACACCGATGAAAGCAAAATGCGGTGCTGGTTGTATAAAATTTTGATGTCGGTTGAAGCA
TGTAGCAAAATTACGTCTTCGACCATGGACGCAACTTTGCCAGCCATGGAGCAGTTGAGA
GAGGGGATGCAGCTCGTTATGTCGTCGGTTGTACCAAAATGAAACACCTGTTATAGCAAA
AATTGCGACGCCATATACGATGTAGCAAAATGCGACGCTGGTGTTAGCAAAATACGGCGT
CGGTTGTAGTAAATTTTGACACCGGTTGTGGCAAATTTCGACATTGGTTGTAGCAAAATT
TGACACCGGTTGTAACAAAAATGATGATGACCGTGATGCCCGTGGTGACCATGCAACTCC
ACCGGACCGTCGTTGCAGCTCTCCCTAGACGCATAGGCTGGGCGGCGGCGAGCTCGCATG
GACTGGTGCACGCGTAAGGAGAGGTCGCCCATGGCCATGGCTCCCGATCGAAGCGGAAAG
GGAACGAGGAAGATGTGAATCTCAGGTGGGAGGGTGTTGCTGGGTCGTCAGGTCACGTCC
GATCCAACGATTCACGTACGACCGGTCGTCGCGCGCCCGATCCAACGATTCGCGTACGAC
CGGTCGTCGCACGCCGGTTCCAAACGTTTCCTTTTTTTCTTTGGAAAAAAAGAAGAAGAG
AGAAACCATTTGCCGGTTGCTACGCTCACCAATGGTGACCGGATCCGGGCCGTGTCGGAT
GCTTCTCAAGCGGAAAAGGGAAGCACACTGGACGGCCGATATAAGCAGCGACTCCACCTC
CTCCCCCCTCTCTCTACACGACGACCACTTCGCCCACCACTCCCACGCCCGCACCGGCAG
CGCCAGTTCACCCACGAGCGCGACGTGCGTCGCCTCTCGCGCCGACGGTCGCGCGCGGCG
CAGGACGCGGGAACCCCCCACCTCGAGCAAGGCCGAAGCTGCCGCGAACTCCTCTCCTGC
GCCAGCTCCCCGCATTGAGCCGCGAGGCTCGGCGAAACGCCACGCCGGGGCGGTCGCCGC
CGCCTGCCGTCGCGCCGGAGTCGGTGAGCGTTGATTTTCTATTCCGTTCGACCGCTGCGC
TCGTCCGAGCCTGGAACCCTGCTCCGCGATGCCCCCACCGGATCTCCGGAGGGATTCGTG
AGCCGCGTGGCTCTGCGCCGGATTTGCTTCATTTTTTAGTTCATTTCTCTGTCTGGATCA
TTGATTTCTGGGAGTAGTTCCATCGCTCTGTTTGCGCCTGGGATCTCTGATTGAGCGGCA
TTGTTTCGCTTCCTTCAACACTGTATTCCTGTCTTCCTGATGGGAATTAGGCATTTCGGG
GTCGTGGGGTGGACTGGTGGTAGTTTGCGATCCGCATTGACGAGTTTTGCAGCCCTGTTG
TTCCCGTGAGCACTTGATTTGCCGGTGCGCTCTTGCTTACCTTTTCCTTGTCGTCCACGG
CGAGCTCTCGCTGTGATACCAGCAAGTTGGTTGCAGACTTGAATAGTATTAGGAATTCCG
TTGGGGCGGTTCGGTTTGGTTGGCGATCATTTACCATCTGCATTTATGGAGGAATATTGT
CCAGTAGTACTAATTTCTTCATTTAAGATGTTCGATATCCAATTAACCCATCAGCAGCAA
TTACTGGAGTTGTTCTTGGTGATAATTGTTAATTTTAGGCAACGATTAAGACTTGCTGAT
CTACTATGCCACTTCGTGTGAAGTAGTTAAGCAGCGTATTTTTTAGATCTTTTTTGAGAA
TTTGGCTCTGTTAACTTTTATTTAAAAAGAAAGAAAGATGAATTCTAGTTTACGTGAAGT
ACTCCCGCTATCCTTCTCAGTATAACCAAGTAGCAAATTTTTAGATGAAGTTAAATATAA
GATGCACGAGACGCCTAAAGTCTCTTATCAGTGGAGAGTGGAGTCTGTTGGCACCTTCCT
TGATTTTGACATCACATCCTATATGGAAATGAGAATGCTTATTTTGGTTCAGAAAGTTGC
CTCTTCACCTTTTTGAATTAGATGGCTCATCTTGGAGGTGTGTATTCTTACTACTGCAAA
CAAGTATAAGCCACCATTTTTTGTAGCCTTTCTTCTTCCGACCTGTTTGTTTTAAATTCC
TTTATGCCTGAATTTGAATGATGTATTAGTTTTCTTCTGGCATGGACATTTTTCTCATTT
TTCAGTCTTATTTGGATAGGCTTGCTTTGCAAACGTGGTTATGTAATTATTTGTGTCTAT
CATTTCTCCAGGAATCAGATTAGCAAATTAGAGGTATCCTGAAATGGGTGCCAAAGAGAA
TGGCGAAGTGAGAGATGAGAAGGGAGTTAGATCAGATTATGAACCATCTAGAGTTTCTGT
TTCATCACAAAGTGAGGCTCATGGTAATGAAGATAATAGAGCGAAAAGAGCTTCAGTAGT
TCCAAAGAAGCTCTTGAAAAAAGAGACCAAAGAAAATAGCCCCCGCATGGCCAAAAGCAG
CACCAGTCGTCAAGTTCAAAACAAGGTGCAACAGAAAGCACCAAACAACACTCAGAACAG
ATCACCAAAACCTAGGAAAGCAGCAGTTAATGCTACTAGAGCAATTGAAGTTAGAAGACC
AGATATTGTAAAAGTCCCTTCTCGCCCTCCATCAGAACTGTCCGAGGAGGCAGATGATAT
GGTTAGTGAAGCGGGAACCATGGATGATAGAGGCAATGAAGAGGCCAAAGAGATTGATGT
GTTAGATGAAGCTCCACATTGCGATCAAAGTACTGGTACTGATGATGAAATTGCTGATAT
TGAAGAAAAGATAGTTGATGATGACAAATCAGTTTTACATCGGAAAAATGAGGAACTACA
GACAAAACTTGAGAAGATGGAGCAGGAACTTCGTGAAGTTGCTGCACTCGAAGTTTCTCT
ATACTCTGTATTGCCTGAGCATGGAAGTTCAGCACATAAGTTGCATACCCCAGCTCGGCG
TCTTTCTAGGCTGTACACTCATGCATCCAAGTTTTGGTCCCTGGATAAGAGAGCTTCAGC
AGCAAAAAACACTGTTTCTGGTCTTGTTCTCGTTGTGAAATCCTGTTGTAATGATGCTTC
AAGGTAAGATAGGGCTAAACTTGATCTCCACTTCGAATTCAGCGTATGAGATGTGGCACA
AGAATAAAGTTTCCTCCATTAACTATCTACTGTTGATGTAGGTTAACATATTGGCTGTCC
AATACAGTTGTTCTCAGGGAGATAATTTCAAAATCTTTTGGCATCTCACGTCAATCAATT
CCAACCATGACGACTAGAAACTTAAATGGCAGTGCACAATGGTTCGATGGAAAATCCACA
CCCAAATCAACACCAATGCTATGGAAAAACAACTCCAACAGCAAGCCAACTGAACTTGCT
TTAATACAGATATCAGATAATTGGCAGGAAACTAGTACACTTTTAGCCGCATTAGAGAGG
ATCGAATCTTGGATATTTTCTCGGATTGTTGAGACGGTGTGGTGGCAGGTAATATTTTCC
TTAGGCCATATAATCCCTTGCTCCAAATTGGTCTTGCATTCCTAGTCCAGTGTTTAACAA
ACAAATAGTCTGCAGTGATTATCTCACGGACCTACCTGTTCTATAAATTTGTCTTATTTC
TCCACATTGTGAACTTCCTGAAGAAATTTTCTTTTCCAGGCATTAACTCCTCACATGCAA
ACCCCGGCAGAAGGTTCGTCAACCCCAAAGGCTCGGAAAGTGTTAGGCCCTTCTTTGGGT
GATCAGCAGCAAGGCACCTTTTCTGTTAACTTGTGGAAGGCTGCATTTCACGATGCATAC
AGCAGACTGTGCCCTCTTCGTGCTGGTGGGCATGAGTGTGGCTGTTTGCCAATATTGGCA
AAACTGGTATTCATCGACATCTCTAGTTTTTTTTAAATGTATTTAATATTTCTAATATAT
TTGTGTATTTGACATGTTCTACTATTATCAGGTGATGGAGCAATGTGTAGCCCGTTTAGA
TGTTGCAATGTTTAATGCCATTCTTCGCGAATCAGCTAGTGAGATACCAACTGATCCAAT
ATCTGACCCAATCGTTGACCCAAAAGTCCTCCCGATCCCAGCTGGTGAGCTAAGCTTCGG
GTCAGGCGCGCAGCTGAAAAATTCTGTATGTACCCGATTCAACTTTTGAGTGCACCTGAA
ATAAATTTCCTATATTTTCTTTATCAAATTGTTTGTTGGGATGATAATTGTTGTTGATGT
CAAAATTATTGTGCATTGCACATAATTATAAGTGCGCTAACCAATTTATTTGAAATGAAT
GCCTACGTAGATTGGAAATTGGTCGAGATGGTTGACGGATAACTTGGGCATTGATGCTGA
TGACCCTGAGGATGAAGGTTTCGACATAGGAAATGGGAATGATGAAAGAATTGGTGCAGC
TGAAGCAAAGTCTTTTAAGCTGCTTAATGAACTGAGTGATCTCCTGATGACCCCGAAGGA
CATGCTTATTGAAAAATCCATCAGGAAAGAGGTCAGTGTCCGCGCATGGCTCCAGACGAA
CCTATCGTACTGTTTTCTGTTGGATTGAGCTGTCGTTAAGCTTTTGCACTGTCTATCAGA
TCTGCCCGTCGGTCGGGCTTCCACTTGTAACAAGAATCCTGTGCAACTTCACCCCTGACG
AGTTCTGCCCCGATCCGGTCCCTAGCATAGTCCTAGAGGAGCTGTATTCTGAGGTGTGGT
TTCTCTCTCACGAAAATGTTTTGGGATTATACAAGCATTACCGTGCTGACATATCAAACA
TTTGCGCAACAGACATGGTAGTTAACACTACACTTGATATTATGATGCAGAGCTTGCTGG
ATCGTGACACCGCAAAACGTGCGATCAGCGCATTCCCGTGCATCGCTGCTCCTATCGCGT
ACCGCTCCCCTTCCCAACTGGATGTGGAGGAGAAAGTGTCGGTAGCCGGAGGCAGCGCGA
AGCTGGACAGGAGGGCCTCAATGGTACAGAGGAGAGGGTACACCAGCGACGACGATCTAG
ATGACCTGGACTCGCCCCTGGCGTCCCTGTTCGACAAGAGCGCTCCACCTTCGCCATCAA
ACGGCGTCACGCCTTTCACTGCTCAGCAGAGAGGAGCTTCCTTGGAGAACGCGAGGTTCG
AGCTCCTGAGAGAGGTGTGGTCGGAGCGGCGCGGCAGCGATCCAGTGAGCTTGTGAAGAT
CACCACCTCTATAGTTACTACTCTTTTTACATAAAAGAAAGGGTTGGGAAACCCTGGAGA
GGTGAAAACCCCAAAAGAAGTTGCTTTTGCAGCAGAACTAGGGTCCCTTGTATGATATCT
TTGTACATCTCTACATATATACTGTTTCTTTTTTCTTTTCTGTAGTAGTGTATAGGGCAT
AAATGGACAGCGCTATGGCCCATTTGGAGGCTAAGAAGATTTGGTCTATGTCCTTTGCCG
ATCCGTCAGCAGTTCTATACTGTTTCTCCCTACCGACGAATCTGACGAGCGCTTTCTTGC
AAGCTGTCTCCACTAGCCTAAACATATCGATGGGCGTGAAGATGCGAATGCGACGGCCCA
ACGGCAGCCGGTCGCCGTCGTCAGACGATTCGGACGGCCGCCGACGAAGGGGACTCGCCA
CCCGCACCTCCGGAGGCAGTGATGGTTCCGCCGTCTGTGGTGCAGCTGCGGCATGATGTG
AGGGAGTCTGTATCTGGCACGAGTGTACAGTGAGGGATCTGGTTGATGGTTGATACTTCC
TCTGGGCTTGCAAATGGAGATGGAGATGCTGCCGTTGCCAGTGCCAGTGGCACCGACGGC
CGGCTCGTTCGTCGGGCCAAAGATGGCCGCGTCAGGGTTCCACTCCGCCGACTGTCTAGA
CAGAGCAGTGGCAGCGGTAGGTATCGGTGTGCCCCCGACCCCCGATACCACTGCCACACC
GCATTTTAGAAACGTCGGCTTTGGAATCTATCGGTACTCAGGCCACGCATAAAGCAGGTT
TAAAGGATTTTAATAAAAGGATTAAAGGAAAAGCCTTCATGACAGCTTTATTGATTTGCA
AAACAATGCTACACCGGCATATAAGACGGGGTAACAAGAATCTCAGAGGTTCGTCGACCC
AATTACTACAATCAGTTCTAGAGGTATAGCAATCCCCAGCGACTTCATGAGCCGCGCCAT
TAGTTTTCCACGCAATTTCTCCCACCGAGCCATTCCTCTCATCTGGACCATGTCGTCTCA
TACACTACTTGTACTACCGTTCTCTTCCGCGTTCCCTACTCCCAACTTATATGGGATACA
AAGTTGTTAGAGAGATACGTCAAAAACACGAAAATTGCAAGTTTCGACGAGTTTGCGGGC
CGGGCCCAGTTTGCTGGTGTTAGAGCATATATCTTCATATGTGGTTTTGCTAATTGATGA
CAATTTTTATGGACTAATGGTTGCCTTAAGT