morexGenes - Barley RNA-seq Database

Contig contig_2548222
Source Contig contig_2548222
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2548222 (6060 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_2548222

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37356	4	1897 bp	AK365058	Available	Available	None
CDS Structure of MLOC_37356

Contig Sequence (6060 bp)

>contig_2548222 6060 assembly3_WGSMorex_rbca.fasta
CGGTGGACGGCGGCGGCGCCGGGAAGCAGCAGCAGCAGCACAAGGAGCCGAAGCAGAGGA
AGGGCAAGAAGCCCAACCCTTTCTCGATCGAGTACAACCGGTCGGCGCCGCCGGGGGCCT
CCAGGCTGGTGGTGCTGCGGGACCCCACGGGGACCGGGCGGGACATCGCCGAGCGGTACG
AGCTCGGCGGGGAGCTCGGCCGCGGGGAGTTCGGGGTCACCTACCTCTGCACCGACCGGG
ACACCCGGGAGGCCCTCGCCTGCAAGTCCATCTCCAAGAAGAAGCTCCGCACCGCGGTGG
ACATCGAGGACGTGCGCCGCGAGGTGGAGATCATGCGCCACCTCCCCAAGCACCCCAACA
TCGTCACCCTCAGGGACACGTACGAGGACGACAATGCCGTGCACCTCGTCATGGAGCTCT
GCGAGGGCGGGGAGCTCTTCGACCGGATCGTCGCCAGGGGACACTACACGGAGCGCGCAG
CCGCTGTCGTCACCAAGACCATCGTCGAGGTCGTGCAGGTGAGAATAAATAGCCAGCCCC
TTGATTCCTTCCTTTGCTTTTTGGCTCCTCACGCTCACGGGATGCCTTCATTCTGTGATG
TGATTCACGCTAGAAATGTTTGTTGGCTACCTGCCTGTCACATGATTCTGGTGTCTGTAT
GTTCCATTGAATAGGCTATGTTCTACTCTGTGAGTGAAGCAATTAATTTCTGCATTTGCT
TCTGTTCATTCGGGCTAGTATTAGCTTATCAAGGACCACATCTTTAGCTTGGTAGTGAGT
AGCTAGAGTGCTGCAACTTACCTTTTTTGTCTGTGTAGTGAATAACGTGTGCATTTGTTC
ACAATATCAGATGTGCCATAAGCATGGAGTGATGCACCGGGACCTCAAACCAGAGAATTT
CTTGTTTGCAAACAAGAAAGAAACCGCTGCACTGAAAGCAATTGATTTTGGCCTGTCTGT
TTTTTTCACTCCAGGTACAGTCATGATATCCTATATTAGCTATCACTGAAGTTTCCCATT
TTAGCCCGTCGGTCACTTGTCGGTGATATTGTCAGAGGACAAAGCTGATATAGTAGCCTG
TCTTATGCTGTCTATTTTTTACTTTGTATTGTTTGCCTAATGTGCTCATTGTTCGTGATG
TGTAGGCGAACGGTTCACTGAGATTGTTGGAAGTCCTTATTACATGGCTCCAGAGGTGTT
AAAGAGAAACTATGGCCAAGAGGTTGATGTTTGGAGTGCAGGAGTGATTCTTTACATTCT
TCTTTGTGGTGTCCCTCCATTCTGGGCAGGTCAGTTTTGTACCTCAAAATGGTCAATTGT
TTTGGTGGCATCAGTCAACTACATTAAACATTTAGGATACTAAAAGTGGACTGTTTTCTG
ATGTCCTGTCTGCACAAAGGGGCCATGTGTCACCTTCTACACTGAAGTTTTGTTTTCCTT
ATTTTGCCTCTGGGGTGATTGGCCTGTGGTTGAGAAAAATATATAATTATCTTGTCCTAT
TGAATGCTCTTTCTGAATAATATGTTTGTTGCTTCCATTTTACAATGCAGAAACTGAACA
AGGTGTTGCTCAAGCAATTATCCGGTCTGTCATTGACTTTAAAAGAGATCCGTGGCCAAG
GGTCTCAGATAATGCAAAAGACCTTGTCAGGGGAATGCTTAACCCAGATCCAAGGAGGCG
TTTGACAGCTCAGCAAGTGCTTGGTAATAATCAAATTTCCACACAAGTTAACTGTATTGT
ATTGCATTCCTTCTGTTCTTCTTAAACCGATACAGAATTGCATTCCTTGTATAAATTTCT
GAAGATTTCCGTCCTAAGATCATTTAATTGCATTGCTTGTATCTCATGTCCATAATTTGT
ATTTTCTTCCAGATCATCCCTGGTTGCAGAATATTAAGAAGGCTCCAAATGTCAATTTGG
GTGAAACAGTTAAGGCCAGACTTCAACAATTCTCTGTGATGAACAAGTTCAAGAAGCACG
CACTTAGGGTATACACCAGTCTGACTTGAACCAATCCTCTTTTCACGTTGGACTTGCTTT
CTCGGAATTTCCTTACATATTTGTATTTACTACAGGTCATAGCTGAGCATCTTTCGGTAG
AAGAGGTGGCCGGCATAAAGGATATGTTTGAAAAGATGGACCTTAACAAAGATAGTATGA
TTAATTTTGATGAATTGAAGCTTGGTCTAAATAAACTTGGCCACCAAATGCCTGATGCGG
ATGTCCAAATACTAATGGATGCTGTGAGTACTCATTATTTTTCTTTATTCCGGGAAACTT
TTGCAACTCTTTGTTATTAGACTGGACTATTCTGTGTTTACGTAGAATCACCATCTCCAC
AGTTTTATCAACTTGGTTTCATAAGTATCATATCAGAATTCAAATATTGTTCCTGGTAAA
CTGGATGAAATGCAATCGTTAGCATACTAGTGATAGGGATTGTAGAAACACCCCTCGAAA
ATTTCAAGTGAGGAACTTGTAAGGCAGTATAGCAAATGCTCTTTAAGACTTTCTTTGCTG
AACTTGGAAAGATCACTTAGCATTAGATGGGTACACTTTCTACATATAACTATGTGTTGA
AGGCAAGGGGTGTTTTTATTATATACTTACCATGTGTGAATGTTATGCCAGGCTGACGCT
GATGGAAATGGGTGCTTAGACTATGGAGAATTTGTTACTCTGTCTGTTCACCTGAAAAAG
ATCGGCAATGACGAACATCTCCATAAGGCATTTGGATACTTTGATCGGAACAAGAGTGGA
TATATTGAAATTGATGAGCTCCGGGAGTCATTAGCTGATGATCTGGGACCAAATCATGAA
GAGGTTATTAATGCCATCATCCGCGATGTAGACACTGATAAGGTATGTGGCAACTGGTTG
GCCAAGCATGCTAGTTTTGTTTCTTGCCCTTTTGGCGGCCATCATTTGACTCCTGACTGA
AATGATGAACATTGTGATTCATGAATTGTAGGATGGCAAGATAAGCTTTGAAGAGTTTGT
GGCAATGATGAAGGCCGGAACCGACTGGAGGAAAGCCTCAAGACAATATTCGAGAGAACG
TTTCACAAGCCTCAGCTTAAAGCTGCAGAAGGATGGATCGTTGCAGATAACAAGTACCCA
ATAGTAGATGATAACGCGGTAGGCAAGTTGTGAATTCCAGATGAAAACCAACCTTGTGTA
GCTTCCTGGTTTTTTGTTGACAAGTATTTCTTTTGTTCATCTGGGTATTCTGTTGCGCTC
TAATTTTCGCTTGGTATCCTGATGAAGCATTAGTTGATTGTTGAAGATTTATTTTGTATG
TAGACTGTGATCCAGACCATCACGAAAAGTACTACGCCTTTGATGAAAGGTAGAGTGTAC
AAGAGAAAGAGGAGAAAGTTTGTGGATGTATGCATTTCCTCTCTTCTGTTGACCATTATG
TTTTGTTCATCTGTTTGGTTGGTAGTATATCCAGAAGCTGAAAGGGTAGAAGTAATCTTG
ACAGATTATTTCCAGAGAAAATGCTATGCATATAATATCATTGTAGACGATCTATACAGA
GATTCATCAATCACCAAAAGCTTGACAACATAATCTATAACTATTTTTTTTTTTAGGGTA
ATGTAGTGATAGTTGAGCATGCCGAGTTTACCTTTTGGAGTGCTCAGAGCCTCTTTCCAG
TCTCTTAGCCAGAAATGGTCCGTGCATGTGATGAACGGAACATCTAAAGTTGGACTTGGT
AGCCGGTCAAGAATCTATGGCATTTGCACAGGCACGGAGCAACGGATGACTCATTAAACA
TTCCCAGAAAAATCGTTGGATCTGGTCGGCACAAGTTGCAGTCTCGTTGGTTGGCACGGG
TATTTCATACTCCTACTATCTGTGCCCGAAAGGGAGTTGCCGTCCTCTAGCAGACGCCTC
AACAGCAGCCAGCATAGGCTGGTTAGGTCCGGGGGCATTGGATGTTTGGACGAGCTCAAC
TTGTCTTTGATCTGTGTGTTCTCGGTTGATGTTGCATCCCGCGTGATCTTCATCTTCTTC
CTTATCTGGTCAGCATCTGCTGCTGATGGTGGTGGTATGTGTGAACGCGTCATGGACCCG
GCGGCACCTGTGTCGAAAAATGGTACTCGTGTCTGAAAGGTTAAGTCTCAAGTGATCAGT
GGGCAACGATGATGTGGTGATGCAGCCAATGGGAGTAAAGTTCGTTGGTCTTGCAATTTC
AAGCTCAACCGCTGTTGGTTCTTGATGACGAGATGCCACCTTAATTTCGAAGCCAAGTTG
CGCCAGAAATCGCCAGGGATTGAGGGAACTGGTATTTTCTAGCGACAGCTTACCTCAAAA
GCTGAAGCAGATAATTATACCTATACCCGCGGCAAAGATGCTATTTTGATACTTTATGTT
GAAATGTCACCATTAAGTCTCTTGTTCTACATGCCCCGAAAACTTAGGATCTTCTTGTTA
GGCGATTAGTGTTTTGAGGGGAGACCGTAAATAAGAAAGATTGGGGAGAGATAACTACTC
TTTGATTATGCACTAGGCTGGGTCATATATACAGTATACAAGCCGGCAGCCTAGACAGAT
CGTGGGTGCTCCACCTCCTCAGAACGAGTGCCGCTACCTAGCCACGATCACCACACACAC
ACACGCCATATCGTATTACAGTATACACAACACATACGATATGGATGTACAGTATAGCCT
AACACCTCCCCTTGCAGTCCTGACGTCGGCGGCGGCGACGCAAAAACTGGATTGGAACTG
CGAGAAAACATCCGATGGCAGCCCTTTGGTCATGATGTCGACGAGTTGTTGGCGTGTAGG
GATGTGGAGAACACAAAAGTGACCGAGCGTGACGCGTTCGCGAACGAAGTGGATGCCCAA
CTCGACGTGTTTGATCCGCTGATGATGCACCGGATTGGCGGACAGGTAGACTGCGGACAC
ATTGTCGCAGTACATCAAGGTCGCCTGGGTTATCGGAGCGAAGAGCTCGCCGAGGAGCTG
GCGGAGCCAAATGCATTCGGCGACGGCGTTGGCAACCCGTGATACTCGGCTTCCGCGCTA
GAGCGTGAGACGGTCGCCTGGAATTTGGACGACCAGGAGACGAGCGAGTCATCAAGGTAG
ACGTAGAAGCCCGACGTAGAGCAGCGTGTATCAGGGCAGCCTGCCCAGTCCGCGTTGGTG
AAGGCACATACGTCCAGTGTACACGAGGCATGTAGGTGTAGGCCGAGAGTAGTCGTGCTG
CACACGTACCGGAGCACGCGCTTGACCAGCGCGAGATGATACTCGCGAGGATCATGCACG
TGAAGGCATATCTGCTGGATGGCGTAGGCGAGCTCCGGCCGGGTGATGGTGAGGTACTGG
AGAGCGCCGGCGATGCTCCGGTAGGCACAGGGATTGGCGACGCATGGTCCGACAGCAGAG
GGCAGCATGCTCTTGGCGTCGATTGGTGTCGGAGAGGGACAACAAGTATCCATCCCGGCA
CGATCCAGGAGCTCATCGGCGTACTGATGCTGAGACAAAGAACCCCGCAGGAGTGCGTGT
GACACGAATGCCGAGGAAGAAGTGGAGGGAGCCGAGGTCCTTCATCGCGAACTCGCCCGT
GAGGCGAGCAATGACGCGTTGAAGTACACCCGTCGAGGAGGCGGTGAGCACAATGTCGTC
GACGTAGAGGAGGAGGAAAGCCGTGTCGTTGCCGTGCTAAAACATGAACAACGAGGAGTC
ACAACGTGTGGCTGTGAAGCCGATGGAGCGGACAAAGCTGGCAAACCGGAGAAACCAGGC
GCGCGTGGCCTGCTTCAGCCCATACAACAACTTGGAGAGTCGACACACGTGTTCTGGTTT
TTCGGATCGACAAAGCCGGCGGGTTCGAGACAGAAGACCTCCTCCGAGGTGCCATGGAGA
AAGGCGTTGGAGACGTTGAGTTAGTGCACGGGCCAGCCGCGCGATGCGACCAGGGGTGCC
ACACCATAGGACTTAGGGGTGCCACACCAGCCCNNNNNNNNNNNNNGGGACAGCCCAAGA
AGCCCTATGCTTAGGAGAAAGAAAATCAAAGAGAAAAGAGAGAAAAAGGGGAAGTGGGAA