morexGenes - Barley RNA-seq Database

Contig contig_2548130

Source Contig contig_2548130

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2548130 (3727 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_2548130

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37299	1	267 bp	AK369875	Not available	Available	None
MLOC_37300	1	194 bp	AK371479	Not available	Available	None
MLOC_37298	3	1983 bp	AK375033	Available	Available	None

CDS Structure of MLOC_37299

CDS Structure of MLOC_37300

CDS Structure of MLOC_37298

Contig Sequence (3727 bp)

>contig_2548130 3727 assembly3_WGSMorex_rbca.fasta
TGCTGGAATACGTCGAGGAAGTCCTGACGAACAGTGGGCCAGCAGGTGTGCGGGAACTCG
GCGGTGTAGCCATCCGGGCCTGGCGCCTTGCGCGCCGGCAAGCGCTTGACCGCCTGCCAA
ATCTCNNNNGCGCAAAATGGCGCATCAAGGTCGGCCAGGTCGGCCGGCGTGATGAGGTCT
GACAGGTCGAGGGTGCACTCTCGGTGTACCGTGGAGCCAAGCAAGTCGTCGAAGTGCGCA
AAGGCCAATGCTGCCATGTCGCTCGGGCTGGTGACCGTGCCATCGGCCACGGCGAGGCTG
TGAATCCTGTTCTTCTGCCTCCGGTACGTGCATTGGCGGTGGAAGAAGGAAGATAGAAGA
TTATTCAACTTGAACTGATTATACCAGAAGATAGAAGAGTAGCCAGTAAAAGAACTCTTA
ATTCATGTAAAATCATACTGTAGTTTTTAAATATCAACTTTTGTCTAGATAATGTTATAC
AAATGACAACCTATAACTTTGGACGCTTCCTCCACCACTAGGTTTTCCTGATCCAAGCAT
ATAACCACCGTTCTGGGCAGCCCCATGCAAACTATTCCATGTCGGGAATGGATGATTGGT
ATGATGAAAACTACTGGAATACCTTTGTTTTGCTCATTCATTATGGAACCAAGAAAACTA
GTCTCATTTCAAGGAAACTTAATACATTCAACTATAACTACACAAGACTTGGAAGATCTT
AAAGCTGCATGAGTTATATGAAATGTGAAACGCCATATATGTTTCCATGTGTTGCGAAGG
ATTGTCATAAGATTATCCATTTTAGATATAATAAATGGAGAACTGCAATAAACGAGTGAT
AGCCTCTAAAGAGTGCCGAAATAGGATTGGTTCCTTTTTCTAAAGATCCGAGACTGGTGA
ACATATTGCATAATTTAAAGTACCCCATTCCATTTTTAGGCGTTATTCAGGATGATGTCT
TGAGCGATAACACATTCTGATTCTTCTATAACATAATTAATTAATATTTACTACCAATTG
CTTAATCATGTGCAAGTTACCAGCGCACATAACACTTTAAAGTTGATGGCACTAACTGTT
CAAACTGAAAGGAGCATATATAAATAGAGTTATGAAGAATTCTGACTACCGTGCAAGACA
AAGTGAAATTTCTAACCTCCAAGGAACAACAAGGAAAAGGACCAGATCTTAATCAACATG
GTGGAGCTTATATTTTGCAAATGGAAGCAAAGTATACAACAACATTTCATTCTTAGCCTC
ATGATATTTCACAAGAATGTCACACTAACAGTCAGAAACAACATGTCAAGATATAGGTTT
CTTTTGAAAGGAAATGGAAGAAAAGTCAACATGTAGGTTTCTTTTAAAAGGAAATGGAAG
AAAAGTTAAGAAGATACTGACCAATAACTGGACGAAGAGTTGGGACATGTCCAACAGGAG
AAACTTGGACACTTTCTGGTAGTAGACAGTCAAAAACCGAGCCTAGAGTTTTGAGAGAGA
GAAAATGCAACCAGTTAGCTATGATTTTCACCAATCTCAGGAAGTATGGAAACATATATG
ATAATGATACCAACCTACTCTGGCCAACCTATTCACCCAGCCAGGGATGGGTTTTCCAGT
CAAGTTCTTACAGACATCATCTGTGAAATGATTGCAGTTCTTTGAAATCAAATTATATGT
ATTGCCATGATACTTCCCTGCAAGTCTTTCAATGAACGAGCGGAAATCTTCCCGAGACAT
GTCAGTTGTGCCTAGCCACACCGTCTTTCTATAGACAAATCCAGGGCAACATTTCGATTG
CACCTCAAATACACCGCTGGATGAGAAATCATGTGCTCCAAATCCATATTCCATGCCATG
AACTACTCATATGGGAAAAATGGGTACAAAAACATGAGTTCACGCTTCTGTAGATCATCT
AAGTATGACATTCACATGGAGAAAAGGAACGTATATGTAGCAAACATAAGTGAGATGTTC
CACAGTTCCACACATAACATAACCAGTCTGATTTCCACGATGCATACAATCAAATAAACC
TACAGTCAGTTTTAGTTCTTGAATTTTAGTGTACACCAAAACCACACTTATGGAAGTATT
TTCTTCATGCAAAATATGATATACCAAGACAAATGCCATGCACATTTCTCCTTTTATATA
CCAATACATTGTTCATTTTATATTTGTTTCCCCTTTTCCCCCTATTATTTCTCGCGCATT
GATCAGACCTGTCAATATATTTTTGACAATCCTCCAACAAAATTCACTATTAAGATTGGG
GTAGCCAAAACATCCAATTGAAATTGATCCTAGAACAGCAACGGTAATAACAAAATCGTT
CAAAAGTCACCGCAACCAAATTGTTTTTAGGAAAACTGAAACAGCTGGCATCTCAGTTAA
ATCCACCAGCGTAATCATGCTAGCAGGGGAAGAATCACGGGAATGGAAGAATCCACATGA
AGAACAAAGGGAAAGGGAATGAAAGGACCAATACCTTCGATTCCGGAGTGGAAGACGCCG
AAGCCGAGCCAGTAGAGGTAATCGTTGACGGGCGTCAGGTCGTACACGTTGAGCAACACC
GGCGTCGTCGTGCCGTCGTTCCCGGCGTCCATCTCCTCCCGCCGGCGGAAGCTAACGAGC
CCTACAGATCTCGCAGCCCGCCCACCATCAGCTGGCAGGGAGGGCTAGGGCTAGGGCTAG
GTCGGAGCGCGCGAGCCGAGCGACGACGACGCCGAGACGGTGGCAATGGAGTTTTTCTTT
TTCTTTTTCTGTTTTCCCTAGAGTTGATTTTGATTTTCTGATTAATTTATTAGGGGATAA
TGAACGGCCGCTTCTTTTGACCATGTGACGCTATCTTCACGCCCAGCTGTTTTGGTGCCC
ATGTGAGACACCGCCGGTGCCGGTACAGTTCAGTAATTCCATTTTCTCTTTTCGAGCAGT
AATTCTTTTTTTAACATACAATGCACACGCAAACGTTGATATACACCCGTATACATTCAT
CCTATAAACGCACACACGTACACCTTATCCCTATAAACATCTTCGACAGACTCGGCCGGC
ATATCATCTTGAGATTTACGAAGTCATTGTAAGCGTATCATCGTCGACGGAAACGTCTCC
TCCCATTGAATGTGCATCACCGAAAATCCTGAAATTAATACAGAAATAAATGCGAGCATC
AGAATTTAAACTCTAATTGGTTGGGATACCACAGTCCCTCTAAACATTCAACTACAGACT
AATTGTAATTCGGACCGTATAGGGAAACACAAAACCCATCTTCTCTGTCCCATAATATAA
GGACGTTTTCCAAATTGTTTTAGCTTAAGAAAATTTACTTCCTCCGTCCTATTAATGGAA
CACAGGGAGTAGGCGATGCCCTTTGTGTTGTGGAATTATTAGTTTAAACTAGCACAAATG
TCCGTGCGTTGCATCGGGTAAAAAAAGCATAACCGATTCATATGTCATTGTGCACCAGTT
TTTATATCCGATTTTACTAAACATCTATGTTAAAGTTAAAAATGCAAATTTCCATCAGAT
GCAGGTAGTCATAGTAGACCAGCAGAAGGTTGTCGGGGACGATGAGGTGCAGGCTGTCGA
TGAAGCTGTGGAAGTGCCTCACGTTCTCCTTCTCCAGGGTCACGGGGTCGATCACGTCGT
CGTCGCCCGTGAGCACCCACAGGTCCCTGGACTGGACTCTCTTCAGGCTTCCGCGGCAGA
AAGGGCA