Contig Data
morexGenes
Links



Map Locations of contig_2548104 (5851 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_2548104

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_37281 4 4359 bp AK356412 Not available Available None
MLOC_37282 1 2666 bp MLOC_37282.1 Available Available LOC_Os12g23770.1, FRAME:-1, EVALUE:6e-101, 13112.m02415 protein retrotransposon protein, putative, LINE subclass





CDS Structure of MLOC_37281






CDS Structure of MLOC_37282






Contig Sequence (5851 bp)

>contig_2548104 5851 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGTGGCCGCCTCGGGCCCCTGAGATGAAGGGGCCCCTCCTTAGGTAC
CCAGTAGCCCATGGTCCAGCTAGTCGACGTCCAAGTTGTGTCTAAAAAAAAGAGAGTCCA
TGTTCTGAAAATAGTGAGCATGTCCAGGTAGACTAAGGCATGCTGCGCATTCAAAAGGAA
AAGAAGGGCATGCAGATTGCCCACGGCCCCATGACGTTGCCCTGCCTTCTTTTCCTTGCG
CCGATGGCTAAGATCCCTAATTGTACTAGCGTCGTCGCTCGGATCAGGAATCACGAGCCG
GTAGTTGCCACACCCTGACGCCTAGAACTCCGGTCTCCAAGCGCTGGTTGCACCCTTGTG
CTGGGCAAACCACATCAACGAGCACCTCCCGCTAGCCGCCAGTCCAATCCACATCAGTTC
ATCGATGAACGCCCGATCACCGACGGACTGATGCCTATCCGAGGTATAGGACTATTTGGA
AATTCAACCACTCCCGAATATAAAGGTTGGTCGCCATACTCACAACTTCAACGTTTATGC
TAGAAATCATTAATTGAACCAATGATGAAGTAACTAATTAGCTTTTAGTTTAGTACATGT
AGATTTTTAAAGCTGAAGTCCTGTTAGATTTGATTGAACTATTGCCAGGAATTTTTGCAA
GATTTTTGCTACTCCCTCCATCCAAATATATAGGTCCTAATATGCTTTTGATGTTATCTT
TGACCATTGTTTAGAGCAATAATATATGACATGCATGTTACACAAAGTATATCGTCAAAT
TCGTATGTGAAAGAAGTTTTTAATGATATACTTTTTATGTTATACATCTCATATATGCTT
TTTTATTTTGACCATTGATAAGATTAAACATATATGAGAATATGATTAATCCTTTTACAT
ACGAATTTGTGATATAATCTTTTCGTGCATTCTATCATATACCCCTACTAGTATTGAGAG
GCCCCAAATTTTATCAATGGAGAGAGTACAATCTTTTTATGCACTCTAGAATCCATCATT
TCAAAATAAAAAAGAAAATTATAATATTTTAGAAATTTACTCATGAGTTTACCATATAAT
CCTATGCATGTAAATCATGTGCCCCTACTAGTATTGAGAGGCTCCTGATTTTAGTTCCGC
CCCGGGCCCCCAAAATCTTAGGACCGGCCTTGAGCGGGAGCTACATGCACCGGGCTGCCT
TTTTTTTTTTGTAGACTCTAATACACATCCTAGAACCCATGTAGTTGAACAATTTTTCTG
TTACCCACAACCTCTTTGTAAATTTCTAGACCGGCCATATGAAATTGGTACAAGTAGATT
TCTGTCATAATATTATACCTTTAAGAAGTAAAATACTCCTTCCGTTCCAAAACATAAGGC
GTATATTTTTTTTGCAGAAGTCAAACTTTTCTATGCTTGACCATGTTTATAAAAACAAAT
ATTAACATCGCAGTAAAAATTCTATTTAAGATCATGTTTTTGCAGAGCAGTCAGTGTGCA
AAGGCCCACCTTTTGTGATGGGATCTAAGCAATTTTTTCTAGTCTTTGTTAAATTTTCCT
AAATAATTATTGGAAGTTGCCGTGTCATGGTAAATTTAAGAAGCAACTTTCATGGATCAT
ACATTGCTATTCCAGCTGCTATATCCGCCATGCATACGTCATCTCTGCACAAGATGTTGT
TATCATATGTGCATGAGTATGTTGATTGTTGAGCCCTTGACTTTGCTGATATCTCAATTC
TTCATTTCCTTTAAGGAATTTACCGTGGGAAGGAGTATTGTTTTGGCCCTTCAGACGTTA
GGCGTTGTCTTTGGGGATGTTGGCACCAGCCCATTGTACACTTTCGATATAATGTTCAAC
AAATACCCCAATACTTCGAAGGAGGATGTGCTTGGAGCACTCTCACTTGTAATATACACC
CTGATTCTAATTCCATTGCTGAAGTATACTCTGATTGTTTTATGGGGAAACGATGATGGA
GAAGGTATATCACTATATTAATACCACACAACTGGAACTAGATTAGAGAATAGTATTTTT
ATTTGAGCTTTATGTTTAATAATGATTGTTCTGTATATTTGGCAGGAGGGATATTTGCTT
TATACTCTCTAATATGCAGGAATGCAAAGGCTAGTCTGCTCCCTAACCAACTGCCCTCTG
ACACCCGCATATCAAGTTTCCAACTCAAGGTACCATCGGTCGAACTCGAGAGGTCTCTGA
GGATCAAGGAGCGCCTCGAGACTTCATCTATGCTAAAGAAGCTACTTTTGATGCTTGTTC
TTTTTGGTACTTCTATGGTGATAGCGGATGGTGTTGTTACACCAGCGATGTCAGGTTCAT
ATGTTTCTGATCCATTGTTCGTCTTATTTCTCTTCACCTAGTCTGATGATGTTGCATATT
TGCTTTCAGCAGTAGTATTGTGTTATCGTTGTCATCTTATCACAGTATTAATTCCTTCTT
TTCTGTCGGTAAAATCTGCAGTGATGTCTGCTGTTAATGGCTTGAAGGTTGGAATATCTA
GTGTTAATGAAGGTGACCTTGAATATCTTGCTAAATAAATTGGTTAAATAGAAAATTGTG
GTACTGCTTAAAAGCGCAGGATGCTCACCTTCTATTGTATTTTATTTGGCAGGTGAAGTG
GTCATGATAAGTGTTGCATTTCTCATTGTTCTATTCAGTCTGCAAAGGTTTGGAACAAGC
AAAGTTGGGCTTGCTGTTGGACCTGCCTTGTTCATATGGTTTTGCTGCCTTTCTGGGATA
GGAATTTATAACATTATAAAATATGGTACAGAAGTATTACGGGCGTTCAATCCCATATAT
ATCTACTACTATTTTGAAAAAAACCCAACTCAAGCTTGGATGTCTCTTGGGGGCTGCCTT
TTATGTGCAACAGGTATGTTTTTTTTGACCATATTATTAATATTAGTTATGGTTAAACAT
TTAAACTTGTTTGAAGTTCTCTAAGGTGTTTTTGCTTGAGGTGCATTTTTTGTTTGAGTT
ACATAAAATAAGTTACAGTCTATCATGTGTCCTTTTGTTTTTTCTTCTATAGGAATTCTG
CAACTCATAAGTATGCTGACTGTATTTGTGGTGTTACTAAACATAATTAGACCTCTTGCT
TGTTCTTACTAGTAACTGTGTCACGTGCAATGCACGCCATGAGCCCATGACCAAATTGAA
CGTGTCGCAAGCACAAGAATTTGAAGAAACTCCCTTTGATGTTTTTTTTCTCTTGGTAGA
AGTTCAGTTACAATCCTCAATCCTCTGGAGAGGTGCGGTGTACAAAAAATGAAAGAAAAG
CAGTGAACATCCCAGGTTGAGGGCAGAACGACCCTGAGTCCTGGAGCACCAGCCTTTGCC
CAGGAGGAGGCCTCATCTTTGATCCTGCCAACTAGTGTAGCGATTGAAGGTCTCTGGCAT
TCTCGAGGACGCACTCGTTCTGGTGTTTCCAGACCATCCAAGGCATGAGCAGGGATAGAT
GCTAGAGCCTTGCGTTGCAGCGGCGGCGTGTCCTGTTCTGCGCGCAGCCACCAATCCATC
AGCGTGGCTTCATGGTCTGCAGCCCGGATCGGTATTCTTAGCCAAGCTAGGATTTCATGC
CAGGTTTGGCGGGCGAAGGAGCAGTCCAGCAGTAGATGCCGAATAGTTTCCTGGGTTTGG
TCGCATAGGAGGCAGCGGGGATGGTGCTGCAGTCCACGGTGAGCATATCAGCGGTCCAGC
ATCGATCCTGGTTGGCCAACCAGTGGAAGAACTTCACCCGCGGCGGCGCCCAGCTTTTCT
AGACGACTTTCCAGTAGTAGCACAGCGTGGAACCGTGGAAGGTGGCCAAATAGCAGGACT
GCGCAGAGTAGGTGCCATTGACAGACCACTTCACGAACAGCCATCAGGTTCGTCGGAGAG
GATGGTGTGCTGCACAGCCTGTCATAGCTGCAAGTATTGGCCGATCTCATGTATGCCAAG
GACCCCGTGTATGTCTTGCGCCCAGGTATTGCCTTGGAGCCCGTTGGCCACCGTTCTGAT
CTTGCGGCGCCTCATGTGGATGCATTGGTGGAGCAGGGGCATGATCTTGCTGATAGACCG
TCCGTTGAGCCATCGATCCTCCCAAAATAAGGCGGTGGCACTGTTGCTGGTGGACATGGT
TGTGGATGCGAAGAAGAGTGCACGCTCCTCGGCCCAGAACTGTAGGTCGAGCCCCTGCCG
TGCGCGCCCTGCGTCTGTGCGAGAGAACCAAAGCCAGCGTAACTAAAGTGCAAGCCCAGC
GCGTTCGAGATCTTGTACCCCCAGGCCACCATGCGCAAGAGGGCGTCAGACATGGCGTCA
GTTCACGTGACAGTGCCCTCCGTTGGCGACGGCGCGTCCAGCCCAGAGAAACCCTCGCTG
AATCTTCTCGAGCTGTCTGAGGGTTTTCTTTGGGGGTGCAAACGCCAGAAGCTGGTGAAC
AGGGATTGCGCTAAGGACGGACTTGACCAGGCCTAGGTGTCCGGTTTTGTTCATCAGCGA
GGCCTTCCACGCTAGGAGTCGGCCAGCCACCCCGTCGATGAGGGGCTGCAGCTGGGCGGC
AGTGGGGTGGCGCGTGGGGTGGCGCGCCGTCAAGGGGATGCCAAGGTAGGTGATTGGGAG
CTCCAGCTGGGCGATCATCGGTGTGGTTACCTCGTGGTCGCCGTGCAGAAGAGTGGCTGA
GCTTTTTGTGAAGTTGAACCGGAGGCCAAAGGCCTCTCAAAACAGGCTCAGAATTTTTTT
GACTGTCGCGACACCGTCCTGCGTGGGGTGGCAGCACAGCATCACATCATCGATATAGCC
GGGATCTCACACCATGGGTGTAGCCGCTGCAAGGTTTCGAGGTCATGGGCATGTTGCACA
AGCTGTCCGAGGGTGTCGACGGCGAGAATGAAGAGCTGCGGGGACAAGGGGTTGCTTTGG
TGAAGCCCACGACGGTGCCAAATTGGCGGGCCAGACTCTTCGTTTAGCAGGGCTGCGGCG
TTGGCCGGAGGATCGGCGCCGAAACCATATTGGCGCAAAACCTCAAACAAGAATGGCCAA
TATATGGAGTTGAAGGCGTGTCCTAGATCGACCTTGAGCATAATCCCCGGGCCCCAAGTT
GGTGGAGCAGCTTAAGTGATTGCTTGACGAGGACGAAGTTGTCGTGGAGGCTTCGCCCTG
TGATGAACACGTTCTGGTTACGGTTGACAAGGCTGTTGAGCTTGGGGGCGAGGCGCAGCG
GTACTAGGACTTTAGCGAAGATCTCGGCCATGAGACGGATCAAGCTTATCAGGCGGTAGT
CGTTAAGCTGGCAGGCATCAGCGCGTTTGGGCAGCAGGGTGAGGAGGGCCTGGTTGAAAT
TGCAGAAACTGCGGGCGCATCTCAAACAACTGCTGGAAGATATCCACAAAATCCTGCCTG
ACCGTATGCCAGCAGGTGCGCAGGAATCCGGCAGTGAACCTGTCCGGTCTGAGCGCCTTT
CATGCGGGCAGGCGCTTAATTGTGTCCCAAATCTCGTCCGTGCTGAAGGGGGTGTCAGGT
CAGCCAGGTGTGGTCCTGCTCGACAGCGGTGCCAAGAAGCGCGTCAAAGTGCGGGAATGC
CGCTTCCGCCATCTCCTCATGCTCAGTGAGTACATGTCCATCCGCTCTGAGGCTGAACAC
ACGATTTTTCTGCCGGTGGAAGAAAGTGTTGTTAGCGTCGCCGTCCTTGAGGTTGGTGAT
GCGAGCACATTGCTTTGATGTTTTCAGATAGTGGAACCTCTATCGAAAGGAAAAACATCA
TGCACATCTTGTTAGGAAAGCAACTTATCTGTATTAAAGGCCCAAGGGGCATATATATAT
TACACATGACTTGAGGTGCAAGGAAAGTAAA