morexGenes - Barley RNA-seq Database

Contig contig_2548082
Source Contig contig_2548082
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2548082 (6426 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_2548082

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37267	1	2332 bp	MLOC_37267.1	Available	Available	LOC_Os01g03510.1, FRAME:-1, EVALUE:0.0, 13101.m00301 protein WD domain, G-beta repeat domain containing protein, expressed
CDS Structure of MLOC_37267

Contig Sequence (6426 bp)

>contig_2548082 6426 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGCACAGAGCACATGTGTATGATGATGATTTCATGAAAATGGAA
GCACATAAGTTGTCTTAGTTATTAACAACCACTCCACTCCAGGGAGCACACGGAAAACAA
AATGTCACAACACACCATCACCCCCTGTATTCTCAGCATCTCACAAAACCAGACGGCGCG
TGGGAAGGAAACGATGACCGTAGGGTTCTTCCTCAAAGCACACGAAAGAATCACAACACG
GAGAAAAAGAAAAAAGGAAAAAAAAACAGACTAGAAAGCGCCGCCACCGCGGCCTGAGGA
AAACAGCGACCGACCATAGCGATGTTTCCTTCGATAGGCGGCCATTGCTAATTGATGAAC
GAGGATGCGCGCCTACTGCTGCGCCGCCAGTTTCCAGACACGGACGCACGCGTCCTCGCC
GGCGGTCACCAGGGTGTCGTTGTCGGTGAAGGAGATCCCGTGGACCCCGCCGAGGTGAGC
TCCCTTGATGGTGCTGCGGCTGGATGCCGGCTTGTCTACGTCGTATATGATTGCGCAGGT
GTCCAGCGAGCCTGTGGCGACGAAACGGCTGTCGGGTGACCAGGCCAGGCAGTTTACCCG
AGCTGTGTGGAACAGCATGTTCTTCACTTTCACCTGTCGAAGAAAATAATTGTCAGGCGC
AGTGTTGATCCGGATAGGCTACACACGTTTCGGTTGGTAACAGTATTTTAGGTAAATCAG
TAGTGGACATTGCTCGACTGAAATGTACTGTAATAGCCATATAGCTATCCTCCTATCCTT
GCATTTCTAGCATATTTTCAGTAACCTGATGTCTAACGAACCTTGTAAAATGGTAATACC
AAGGTGCTTCAGATAGCATTTAACATTTCAAAGTAGCCATACAAGGCATGGTAATTTGGT
GATGAATTAAGAGATCGTATTAAATTAATAATACCAAATTCACAAGCTTTGTTTTGTTTA
CCACAAGAAACATCACTAGAGGCTTCTGTAAAAAGGCAAAAAAAATGGCGATCTGGAGTA
ATTTCTGCCTGAAAGCAGTGAAATTTAGGACCAGGACACTACAAGGTAGGTGCAAAATGG
TAATTCTCAGAAGAGAGACGAAACGGTTGGCACGCGATCAACTGACAGAAAAATGATATT
TAGTACCAGGACAACAAATTGGGCTATATTCAGGACAAGAAAAAAACTCGAGGGACAGCT
AAAAAAAAGGAAAAAAATCGAGGGCATATGAGAAACCGGACTAATTTTAGAGACAACAAA
AAAAATCTATAAATTTACATGCTACATAGGGTGATGTCTAACAAGTTGTGACCCAATAAC
AACAATAACAAAAAATACTGACATCCACTATGAAAATGATAAAAGTTATCAAATGACAGT
ACCTCTCGAGTTGCTCGATCCCATGCGACAGCTTCCCTGTTGGAATCAGCAGATGCAAAC
ATGGAAACATCTGGCGAATAATGTATGGTAGTAATAGGACCCCGGTGTTTTTCAAGTACC
GCTTCTTCTGTAACAGTATCCCCACTGATGGAATAGATCCGCAGTTTCCCATCTTGTGCA
CCCACGATAGCTTCAGTTCCATCAGGAGAAACAGCAGACGAAGTGATGGTGTAACTAACT
TTGGTTGTGGAAGTGACGTTTGACTTGTTCAGCAATACGATCGCAGAATCTGTGGTAACC
AGTGCAAGCTCAGGTTGTTGAAGTGCAATGTTTAAAGCATTTGGCTGACCCCCTACATCA
GTTGACTCAGCATCTCCACACTGATCTCCATTAACAGGAATTCTGAAGACCTGTTTTCAA
GGGGGGGAAACATAAGTTCATCATCATAACCGAGCCTAACCATTGCCCAAACAGAAAAGA
AGGCATTGGAAAGCTTAAACCCAGTAGACGACTTCATCTAATGATAAAATAATACTCCCT
CTGTCTCAAAATCTAGACCAAGAAACATCTTATATTTTGAGACAGAGGGAGTCTATACAT
GCCACATACCAACAGAACAAATATGTGCATTACAATTTTTTTGGGCATCTCAGGATTCGA
GAATAAAAAAACTATGCATGAAGGTAGAAACAAAATCTTCATAGGCATTACTAAACTTGA
ATTCTCAATCCAGCAATTCCCAAGTGAAATGAATTTAAATCCAAGGACAGGTTTAAAAAA
AAATCCCAGGATATCTAGCATCTGCTACCAACAATGAGATATATATGTATTAGAAGCATA
TCACATTGCTGACCAAATATGGGCTTCAAATGCAGGACATGGTTCTTTTGGTAAGCCTAT
CATGTCCTTAGACTAAGGGTACAAAGAATGATTATCACTTTGTTCTTAATCCTATGCATA
TTTCATTTATCCTGACATATATTCTGATAACAGTAAGCAAGTAAGCATATGGACCACCTT
GCGTTTTCTTAGTTCTTACCTTGTTATCATACCCTGAAGTGATCAGCTCCTCTTCTGTGG
CAACAAAGCATTTGATCTGGGTGTTGTTCTTACGAATCAACCTGCCACCATATCCAACAC
CCCGTATCCATTTTAAGATAACCCCATCATAGCTTGTAGATAGCATAGTTCTTGGGTTAC
TTTGAGGAAAAAGTGCCAGCGCACTAACAGTCTTCAAATGTCCTGCAAATGATACTGGCT
CTTTGTCTGGATTGCTTGCGGAGAAGACATTAAATGTCCCACCAAGAGAGACTGTGACAA
GATTATCATTCTGCCAGAGGCAACCCACAAGCATGTCATCGACACCACCAATACCAGTAC
AAACCAAAGTTCTGTTCAACGTTCCACTTGCATCCTCATTGATATCCCATACTTTCGCAG
TTTTATCAGCAGAAACTGTTAGAACCTAAAGGTACGAACAACAAACAGAGTGACATTAGG
ATTAGACCTGAATGTACGAGCAAGAAAGATACCACCATTAAGAATAGGTACACATATCAA
ACATAATTAATTAGAGCGAGACAAACTGATTGATGGATAGCAAAGAGACATTAATACCGT
TGAAGCACTATGCTAGCTAAAAATTGGATTGGAGTTTCAGCTGTAAACAATGATGCATGC
ACATCCTAGGTACATGATATATAATTCCAGGATTTGCAGATATTCTACCAACAAACAATA
ATATAGATAGACCATGTTTTATGATTAATGGCATTATGTTATGTGAACTGAATCTGTAGT
TGGCTCTGCAATCATGCCTGACAAAGGAACTACACATTTCAACAATAGACCAAGGCCAAA
CTTGATAGACCATAAACTGGAGACATTAAGTATGGTTAATACAGTAATTGATATCAGGGA
ACAACTCATATCAAACTTACTTGTTTACTGTCAGGACTCCAGCTAACAGCATATATGCTC
CCAGTGTGACTGCCTTCACTGGATAGCTCTCCAATCTTGTCTCCAGTTTTGCCATCATAT
ATTAAACCCTTCTTATCTGAACTCACAGTAATAAACTTGGTTCCATCAGGTGCGTACCGG
ATACAGTTAACAAAGTTAGTGTGATCCCTGAAATTCAAAGAAACAGGAAGATGTGAAGTA
TATGTGTAGGTGTGCATGGCAGTAAATAAATTACAAGATGAAGCATCGGTCCATAACAAA
TGACAAGCAAACGCAGTATTTGTGAAACCTTGGGAGCCGAAAAACTATGAAAACACACTT
TCCAGTAGGTGTTAAGTAATGAAATATGAATGTCAGCAATCACCGCTGACCTTATGGAAT
GTTTGAATTTGAATGGTGGTCCTTCATAGTAGTTTGCCAGAAAATCTTCACCGCATGTGA
CGATGCGGAATGGTCGGGTTGGCTTGAAATCGCAACTCAAAACTCTCTTTGAGTGCCCAT
CAAAGTCACCAACAGTGCTGCCAGAGTCCCACCTACGCATTTCGGAGAATTTAGCATAAG
AATGTATACCAGGAGCGAAATAACACATAAGAGTCTCATGATAGAATGAACTAGAATGGC
TGGTATGTCCATATGATGCCAACAGAAATGAGCATGATCACCAGACACTACTTAGACAAC
ATTAATCAATAAACTCCACCCAAAAGGAGAGGGGGGCACGATCCCATTATGTCCTTCATA
AATCACCCCAAGTGCCGGAAGGTAGTAAAATAAATCCTCATAGAATACATTCATCAATTC
ACTTCTTAGTGACAAACCATCACAAAATACTATGTTACCGACCTTCTGATCATATAAATT
ACAGGGGATCTATAACCCGATGGCAATGGCACCCACAAATCCACAATGATATGGAGAGGA
ACCATTCAAATCAAAATGATAATGAGAGGAGGTCAACCAATCATGTCCGTCGCAAATCAC
GGCCATATACCTTGAAATGAGATCTCCAGCGGAGCCATTAGCTAGACGGATTCCTAATTG
AATGGACGGATCAATGACAAGAACAAATCGCGGATACCCAATCCCCAAATCCCTCCACGA
GAGCGAGACCGGTACCGAGATGGATTGACTGGGAGGGCGGGGCGCGATCCGCTTACATGA
AGGCGCGGACGAGGGACTTGCCCTTGCCGTCGCCGGAGACGACGATGCGCATGCCGTCGG
GGGACCATCGGAGGTCGTCGACGCGGCCGGAGATGGGGCGGAACTCGGCCTTGAGGGCGC
GGTCGCCGTGGCGGCCCCAGACGCGGACGCAGCCGGAGGCGTCGGCGGAGGCGACCCACT
CGCCGTTGGGGGAGAAGCGGGCGACGGTGGTCGGGTAGGCGTGCTCCGTGTATGCCCAGG
CGTCGAGCGGCGCGTCGAGGCGGCGGAAGACGACGCTGCGGCCGGAGCAGTAGGCGATCG
TCTCCGTCTTCGCGTCCCCCGCCAGCAGGATCCCGCGCCCGCGCTCCGTCGCCGGCGAGC
ACGCGTACGTCTCCTGCAGCTGCGCCATTTTTGGCTGCTTGATTTGATTGGTCGATTCGG
TTGATCTGGGAGGAGAGAGGGGGACGGGAGTGGACGGTGGTTATGCGGTGACGGAACGGA
ACGCCTGGGTACGAATGGCTGGGTTCCCTAAGGATTTCGGCTGTGCTGGTGACGTGTGGG
GTCCACAGGTCAGTCGGGCCAATGGATGTGCAAAGAAAGAATATAATTATTAATTGAACA
TCAAGAGAGGATCGTCATTTGGTGAAAATAGTTGAGCGAGTATATGATTTTGATGGTCAC
TTCTCGGCATTACCGTGCGGCGGCTGTGCAAGCATGCAATATGTTTTCTTCGTAATGCAT
GCATGCATGCAATAATTGATTTGTAAATGAACGAAATTCAAAAACGTTTATCTCTTAAAC
CGTTAATTCGATCAATGATCTGTTTTTACTGTTGACTTTGTTTCGACGAAATCTTTAAAA
CTAGATCCCATGTCGACATGTTTCGACAACTTTTTTTACTCGTACTTACCACATTTGTTA
CACTTATTTATCATATTACTTGTCTGATAAAAAATAACTTAATCGACATATATATTTAAA
ATTGCATATAAATATGACATCTCGACATAATCATACTAACAAACACAAACAACTTTTTAT
AGACGATTACGCGCGAAAATATAACAACTCAACATATTTACAACCGATGACTATAAGAAA
TCTTTTTTGTCATCGTTTGTAATATGACAACTCGGCATCGTTAAACTAACTAACACACAA
AATAGTTTTCTGGCAAAGGTGTATGTAAATACGACAAGGTAGCATATTTAAATTAACAAA
CACAACCTATTACATGCTTTTTTATATCATGCATAATAGAAATTGCTACAAGGCTTTATA
CGAAACAACATTAAAAAGTGGCAATCAAGTTATTTTTGTCAGACAAGTAAGTGGTTAATA
TTATGGCAAATGGGGTAAAAAATGTGACAAGTATGAACCAAAAAAATATATTTGTCAGAA
CATGTCGACATGTGATCTAGTTTCGAAGAACTCGTCGCGAGAAAGTCAATGATGAAAACA
GATCATCGATTGAATTAACGATTTTATAGATAAAACTTTTGAATTTCAAACATCAAAGGG
AATTGTTGCGTTGTATGCTTTTTTCTTACGCTGCCAGCCTGTCATTGCATGTTGCTCTTT
TTGTTACTTCTTGCAATGAATGCGTGCACACAATTTAGCGGGGCCGCTGTGTAGTCCTGT
CCAAGAACATATAGTTGCTTACATAAAAGGGAAAGAGGTGGAGTTGTTAATCTTCTGGAG
TCAACCATGAAACAAAAGAATTGGCAAATTTAAGAGAATAGCAAACGACGTGCAAATCAT
ATACATCCCTGTTGCAAATCCAATTTATGAGAAGACAACACTGTTAGATAATGAAGCGTT
CCTACTCCCTCGAGGGGAGCCGCATTGGTTTATATTGATAGGTTGCCTTGTTGTGCAAGG
GATAGATACAAGAGTTTGAATACAATAGGAGATAGAGGAGATAAAGGAGGAGGTTGAGAT
TACAAC