morexGenes - Barley RNA-seq Database

Contig contig_2548022

Source Contig contig_2548022

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_2548022 (4379 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_2548022

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37234	1	489 bp	MLOC_37234.1	Available	Available	None
MLOC_37235	10	2870 bp	MLOC_37235.1	Available	Available	LOC_Os10g11354.1, FRAME:-1, EVALUE:0.0, 13110.m01034 protein MATE efflux family protein, putative, expressed

CDS Structure of MLOC_37234

CDS Structure of MLOC_37235

Contig Sequence (4379 bp)

>contig_2548022 4379 assembly3_WGSMorex_rbca.fasta
TGGGGTTGTACCGAAGTCCTTCTCTTCAAACATAGAATATTTTAAATCTTGAATTTATGG
AAATCTTTGTTCCTGTATTTTGTCCACGTTGAGCTGTCCTGGTACCATCATTTCCTACTG
CTGGACCAATGTGGTATACTTTAAGGGACAAGCATCTGATTTTTGCACACCTTGTGTTTC
TATTCTAGTCTTCTCCCCATTAACCACAGTGCGCATCGTTGTCACTAGCACTAGATAAAG
AACACAACGGACTAGGAGCCTTCTCCGTCCAATACATGACCGGCACGTCCGCACCAGAAA
GAAAGCTCAAAAGCATACACTTTTGTCAGCCGTTTGCCCATGAAGCACATTTCTGCAAAG
TCTTAACGTCGCCTCCTTGTTTTATTTGTCCTGGCGAAAGTTAATTTTTACCTTTTCCAG
ATTCTAGTGACCCTACCCGATACCAAATACAAAAACCAAGGATATGCAATGCTGACGAGG
AACCTCCTTTCCATGCAATTGAGCAATTATATTCTTTCCGTGAAGAAAATACCCTCATCA
TTCCTAGTGTATGAAAATCCTGGATCCTTATTCCCTTGTATATCACCAGGTACTACACCC
TCTACCCATCCCAACATTTTATTTTCTGTATACGAATTGTTTTTACCAAAGCGGATCGCC
CATTTCCCGATGCTTCTGTGAAGAACTGCACATGCTAGTGACATCGAGACGAAGCACCAT
TTTCGGCGACGAATTCCTCATTGGTTCTATCTCCATGCACATCTCGCTGGCTAATTTCCC
GAAAAATTGTGCATCCTGTCTTGTGTGTCTCATGTTGCCAAGTCTACAGGCAGGGAAGAA
CTGAAAACCCTGTCCTTGGCCTTCAAAGCCTACCAAAGCAAAAACATAGGTCACTGATAA
GTCAACAAAATAAATTTGATCGTGTGCAAGAATATTCAGTTGTTGTGCTTACTTCTTTGT
CCCAGTTGGTGCGCAGGGTTATGGACAGGAGCAACACCGTCTGCACGACAAGTCCGCAGG
TTAATCCGAACCACAGCCCCTAACAGTTCATAACCACAATTTTCAGAGGTTTCCGCAAGT
GAAATTAGGAATATAGGTGAACTTGGAGCTTTTTGTATAATAAATTTAGGAAGATAGGTA
CCATTCCACCAAGATGGGACACAAACGCAAAATATAAAGCCGCCGGGATGCCGACAAGGT
AGTATGCGCTAAGATTGACATACGCGCCAATCTTCTGCAAGCCACAGCCCCTAACAATAC
CTGAAAAAACACCGATCACAGATATTGTTCATCCTAAAACCTATATGCAGGCTCCTTATA
ATTGCCAAATTTATTTTCTCTGAAGCACCTACACCACACTTACCTGAAAGGACACACTGC
AGGTCATCAAACAAGAATGTGACGGCGAGAATTGGCATCATTCTGGCAATGTATTCCACC
ACTTCCTTCTCGTTGCTGTATGCGTACCCCCATAAATTGCGCACCAAAATGATGGCAAGA
CCGACCGATACGCTCGACACAAGACCCAGAACCATGATCACATGGGTCGCTAAACGGGCA
GCATCAGGTCGCCCAGCACCGAGCTCATTTGATACACGGGTGCTACAGAGGTGAGAGATA
ATAATGAATATCGCGTATTCTGTGTGGTGAGATAGATAGTAATCACTGAAGTACTATATG
ATTAAAATATCAGGTTTATGACTTGGAGTTGTTCAGTCTGACCTTATAGCTGCACCAAGT
CCAGATGGGATTCTGAATACTAATGAAAGAGTATTTAAACTGCAGCAAGTTGAGCTGTTA
CTATCGGCAGAAGGCAAAGGCGAACCGGATGTGAAATAAGCTGTTACTATCGGCAGAAGG
CAAAAGCGAACCTGATGGACAACACGGACGCCTCGAGCTTAGGATTTGGAAGAAATCCAG
AAAAAAGTACAAGCAGCTCAAATGACCACCACTCCAAACTGTGTAAAATAAATGTTGGAT
GAAATTCAATTGGACATGGACGACAAAAAATTCTACCTGCAATTAGAGGGATCAACTCAA
ACTCACCAAACCATCAGAGCAGATGGAACCGCAAGCCTCAAAAAGCTAAGGATGTCGCGA
AATGCCTCCATTGACAACCCTGTCCAAGTCCTCTTACAGGATGGAGAGAGCCTGATGTAG
AGAGCCAGGATGAGCAGATTCGTCAGGTAAGAGATTGTATTGGCCAAGGCAGCACCCTTG
TTGCCCAGGCCAAGCTTGTAAACCAGCAACCAGCAGACCAAGATATGGTTCAGTGCTGTG
ACACCTGCGCTGAGCATCACCGGGAGGACGATGTTCTGTGTTTGTAGGAACCGGACATGG
CACTGCAGCGGGCCGTAGACGAACAGCGCCGGGATCATCCAACGGATGTAGCTCCCTGCT
CCCATGGCAATCTCAGGGTCCTGGCCGAAGAAGAGGAGGATCTGGCCAGTGTATGCCCAT
ATCACAGCAACCACGACGCTCAGAGGAGTGAGTACAAGGATTGCCCTCTGCTTGTAGATG
CCAAGAAGATGGTACTGCTTTGCTCCGAAGGCTTGCCCACACAGTGTGTCCAAGCTGCTC
GACATGCCGGCCTCAAATGATCATGAACAAAGCAAGGTGATGTTAGGTGTTCAGGAGGTC
CAACATATGTAAGAGATGAAATTGACATAATATATATACCAATAAGCTGAAGCCGGTGAC
ACCGGCAAAGGAGGTGGCGATGGAGGCACTCGAGAGATCGAGCTCACCGAGATGACCGAC
AAACATGACCGATATCATCTGGACGACATTCTGCAGCAGGCTTCCAACGACGAGAGGCCC
GGCAAGGTACAACTGCTTCTTGACCTCAATCACTAAGAGGCTCTCTCCTGGCCCTCCTGT
CTTCTCAATGTTGCCTCCGACAAGGGGCTCCTCCATGCTTGGCAGCATAATTGGAACTTC
ACACTCTACTTCTGAACAAGGTAGGTGTTCACAAGTGAAATGAAGGGATATTTAACACGA
AGTGGAAGAGGATACCAATGGATTTCACCAATATTATATAGCCAAATTCCAACAGGAAAT
CGAGAGGAAATAGAGGGCATTAGCTTGGCAGCCAAGTTCAGCATGTGTCGACAAGAAAAT
TTGAGCATGATTCAGACGATTCAGAGTACAGAAGCCAAAAGTGGACTAAAACTCTATGGG
AGACTAAGGAGGCAGCTTGGCAACCAGGTTCAACGCAACTGAGACAATAACTATCCGACA
ATCTGTAGTGAATTGGATGATAAAGAATACATGCTCGACCAGAACAAGATTGCCATTCTA
TTCTATGATTCTATCCCTTCTTGGTAAATTTAATTAAGTGCGCTTAGATCTGCAAATACT
AATCAAAGGAATAAGTATATACCAAGGTACTACTAATGAAATCAAACATGGATTCCCTTT
GCCCACTACTAGTTGTCACTGTCACACTTTTTGAACACGTCAATAATGCAAACAGTTAAA
GGCACGGCCAATCGTTTGTAAGCGCACATAGCTAAAAATTCGTCCTTTTTTTATTCTGTC
GTGTCTGACCACCGGCGTGATACGACCTATTACCTCTGTTTTAAAATATAAGATGTTTTG
ATAGGCTAAAATGACCTACTAAAACGTCTTACAATAGTTTAAGAAAGGCATTTTCCAAGA
TCCAGGGCCATTAGCGAATCAACCGACGAGTCCTGTGATTAGGAACTGCAAAAGTAAAAA
TTCAGAATGGCTTCTTGAATCCATCCGAGTAAAAATTCAAGACATCCCTCCTCTACGCAC
AAAACAGAAGCTCCTAAGATGTTCTTCAAAATGAGGCAAGAGCAAAGCCTGCCGATTTTG
GATGCTACTGTACAACCAAAGCACGGAATCAAATTCCAGAGAAGTAGCGAACCTCTCCAA
TGGAGCAATACCGAAAAAAGGGCAAGAAAGGGGATAAGAACCGCACCGCAGGCAGGTAGA
GGCCGTGTTGACGATTCCGCGGGAGGGAGGGCACCGCGGGGGCTAGGCGTCGGCGGCCCG
GTGGCCACGGCGAGGAAGCGGCAGAAGAAGTCCTCCACAGACAAAGGGGGATGGGGCCGC
GAGCAAGGCGGCTACGGAGAAAATGAGTGATGCATGTCACACTGTCACACCACATACAGT
ATATTGACAGGGTGAATTTTATTGAATTAAAATAAAATACTCCCTCCGTCCCAAANNNNN
NNNNNNNNNNNNNNNNNAGCTCTAGTATAAAATTGTACTAAGGCCCTGTTTGGATCCATG
GGCTAGAGTTAGTTTGAACTAGTTTGGGTTCAACTAGCCCTAAAATATCCAAACACAAGG
GTTAGATTGGAGCTAGTTGCATCTAACCCATCTAAAAAACTAGCTCACCCAAGAGGTGC