morexGenes - Barley RNA-seq Database

Contig contig_2547990
Source Contig contig_2547990
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_2547990 (9170 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_2547990

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_37216	1	3974 bp	MLOC_37216.1	Available	Available	LOC_Os01g18670.1, FRAME:+2, EVALUE:0.0, 13101.m02024 protein MDR-like ABC transporter, putative, expressed
CDS Structure of MLOC_37216

Contig Sequence (9170 bp)

>contig_2547990 9170 assembly3_WGSMorex_rbca.fasta
GGATGCCGTGCTTGTTCCGGAGGGAGCGGCCGGCGGGGGGGCCACGGGCGCCGGGCTGCG
GCTCATGCCCGTCCTCTTCGGCGGCCTCGTCGCCGCCTTCGGCGGCGCGGCTGCCGGCAG
CGGCGACGTCCTGGCCCGCGTCTCCCAGGTCTCCCTCGAGTTCGTCTACCTCGCCATCGC
CTCCGCCGTCGCCTCCTTCGCCCGTAAGTGCCTGCCGCCACCCTGTCACTTGGAAGCTTC
CAGCTGCTGCCATGCCATGCCATGCGACCCGTGAAAGTTTAGTTCCTCTGTCTGACATCC
TGTGAACTCAGAGGTGACCTGCTGGATGATCACCGGCGAGCGGCAGGCGGCGCGGATAAG
GAACATGTACCTGAGGACCATCCTCCGGCAGGAGATCGCCTTCTTTGACATGTACACCAG
CACCGGCGAGGTCGTCGGGCGGATGTCCGGCGATACGGTCCTCATCCAGGACGCCATGGG
GGAGAAGGTCGGCAAGTTCATCCAGCTGATGGTGACGTTCTTTGGAGGCTTCGCTGTTGC
CTTCGCGCAGGGCTGGCTCCTCACCCTTGTCATGGTGGCCACCATCCCGCCGCTCGTCCT
CTCCGGCGCGGTCATGTCCAATGTCGTCGCCAGGATGGCGTCGCTGGGGCAGGCCGCCTA
CGCCGAAGCGGCAGTCGTCGTCGAGCAGACCGTCGGCTCCATCAGAACAGTAAGGTTCCA
CTCTACAATTCAGAGCATTGCGACGAATTTTGCAACAATGACAAGAATGTGGAACACAAA
TCACCACAGGTTGCATCTTTCACCGGCGAGAAGAAAGCGGTGGAGAAGTACAACAACTCG
CTTAAGTGCGCTTACAGTTCCGGTGTCCGGGAAGGCCTAGTCGCTGCCATCGGCATGGGC
ACCGTCATGATGCTCCTGTTCTGCGGCTACTCCCTGGGGGTATGGTATGGAGCCAAGCTG
ATCCTAGAGAAGGGATACACCGGTGCCCAGGTCATGAATGTCATCTTCGCGGTGCTTACC
GGCTCGCTGTAAGTTCTCTGCGCCTTCCTGATCAGCAATTCAGTTGTAGCAATCTCAGTT
TCATGATTGACAGTTACTCTTATTATCAGGAAAGAGAAGGAATGTTTAGGTTTAGCAACC
TTCAACAGTTGCCATTTCATTTAGACCGGATAAGGCAATCTTAGCCATCCATTATGGATT
TCGTGCCGATTTTGGCAAGTGTTTGACAGGGATAAGCAATGTTGGCTTTCGTGCGCAAAC
TGCTAACCCAACTATGTTTGTAGGGTCTTATTTAGTTGGCAGCAGCTAACCAAGCGCATA
TCAAAGTCATTGCTGTCTTAACTATCAGGAAAGAGAAGGAAGGTTTAACAACCTTCAAAA
GGTTGATGTTTCATTTAGGGGGGACTGATAAAGCAATCTTAGCCATCTATTTTGGATTTT
GTGCTTATTTTGGCAAGTGTTCGACAGTGATATGCAACATTAGGTTTCTTGTGCAAACTG
CTAACCCAACTATGCGTGTAGGGTCGGTCTTATATAGTTGGCAGCAGCTAACCAAGTCCA
TATCCAAGTCATTGTTGTCTTGACTTCACAGTTCACAGCAATCATAGCCAGTCAGTGTAG
CACGAAACAAACATTTGATAAATTTGTATGGGTTTTTGCAATCATGTTCCCACCAACTCT
TTCATTGTTTTATGGAAGACCAACTATTCTTTGATTTCATCAGCTGCTGCCTGAAAAGAA
TTACTCATTAGATAAATTTCAGCAGTTGAAATTTGCAGTATTACTCAATCGTCTACTGCT
ATATTTTTGTACCACCGACCAATTTTCCCTGTTCATATATGTGATTGAACCCATTAAACT
GAAACCCATTAGTTTGAGAAGCTGAGACTTTTCTGTTGTGTTTATCAGAGCTCTAGGACA
GGCATCACCAAGCATGAAAGCATTTGCAGGAGGACAGGCTGCAGCATACAAGATGTTTGA
AACAATCAACAGGGAGCCCGAAATCGATGCATACAGCACAGAGGGTAGGATGCTAGACGA
TATTCAGGGGGATATCGAGTTCAGAGATGTTCACTTCTCTTACCCAACAAGGCCCAATGA
GCAAATATTCAGAGGTTTCTCCCTTTCCATACAGAGTGCCAAAACCGTTGCATTGGTTGG
CCAGAGTGGGAGTGGAAAATCAACAGTTATCAGCTTGATCGAACGGTTTTATGATCCTCA
GCTCGGAGAAGTTCTAATAGATGGAGTGAATATCAAGGAGTTGCAGTTAAAGTGGATCAG
AAGTAAAATTGGCTTGGTGAGCCAGGAGCCGGCCCTGTTTGCAGCTAGCATAAGAGATAA
CATAGCTTATGGTAAGGACAATGCGACAGATCAGGAAATCAGAGCTGCGGCTGAGCTTGC
TAACGCCTCCAAATTCATTGATAAATTACCCCAGGTTAGAAGACCGACAAACCTTTGAAT
TTGCATTAACTGGTAATTAGTTGTAAATAGATGAAGCAGGACCCAGGACCTAGGCAATTC
TATACACTGAAGAAAGAACTAGATGTTAGACTATTCTGCCTCATATATTGAATCTCTGCT
GTTTGTGACATTCCTTAGGGTTTCACTACTTCGGTTGGTGAACATGGAACACAACTATCT
GGTGGACAAAAGCAAAGGATTGCCATTGCCAGAGCGATTCTCAAAGATCCAAGAATCCTG
CTATTGGACGAAGCGACAAGCGCTTTGGACACTGAATCTGAAAGGATTGTGCAGGAGGCT
CTTGATAGGGTCATGACCAATCGGACCACTGTCATTGTTGCACACCGTTTGACTACTGTA
AGGAATGCCGATACAATTGCTGTCATCTGCCGAGGATCAATAGTTGAAAAAGGTATTATT
CTGAAACATTGGCATCTGTGATTCTAAATAATCATATAGTACCTCTTACACATGTTATAT
GTCAGCAAATGCTCACTAGCTGAAACATTTGACAATCACCAGGTCCGCACCATGACCTTT
TAAGGGACCCAGAAGGAGCTTACAGCCAACTGATACGTCTACAGGAAACAAGTCGTGCTT
CTGAGGGTGCAAGCAATCAAAACAAGTCGGGTAGGAAGAGTGATACTGGGATTTGGTTAG
GCAAACAGTCATTGGCAAATCAGTCAAGTAGCCAAAGGTCATCTCGGGACAACAGTAGCC
ATCACTCATTCTCAGTGCCATTCGGCATACCTCATGAAATTGATGTTCAGGTTGGCTGCT
CGAAGAATATAACTGATGAAATACAACAGGAAGTGCCCCTCAGTCGCCTGGCATCCCTTA
ACAAACCAGAGGTCCCGGTGCTCATACTTGGTTCTGTTGCTTCTGCTATCAGCGGAGTGA
TATTCCCGATCTTTGCAATACTTTTGTCGAATGTGATCAAAGCATTCTATGAGCCCCCAC
AAATGCTAAAGAAGGATGCTGCGTTTTGGTCATCCATGTTCTTGATATTTGGTGCAGTCT
ACTTCTTGTCGCTCCCTGTCGGCTCATACTTTTTCTCAGTGGCTGGGTGCAAGCTCATCA
GAAGGATCAGACTAATGACTTTTGAGAAGGTTGTCAATATGGAGATTGGATGGTTTGATG
ACCCACATAACTCAAGTGGCTCAATTGGGTCAAGGCTATCGTCAGATGCAGCAAAAGTTA
GAGGGCTTGTGGGTGATACACTTCAACTGGTTGTGCAGAACACTTCAACATTAGTTGCTG
GCCTGGTAATTGCTTTCGTATCAAACTGGGAGCTATCTCTTATCATTTTGGCGTTGATAC
CACTCATCGGCCTGAATGGATGGATCCAGATGAAATTTATCCAGGGATTCAGTGCAGATG
CAAAGGTATATGCCAGAAATCATAAAATTGTTGATTTATTTTCTTTGTCAATCTATTGTG
CAATCTCTATGTCAATCAGAATTAGATAGTTACAAATACTTCTGTTCTGTTGGGTCACTG
ATTCTCAAATATGATTGTAGATGATGTACGAGGAGGCAAGTCAAGTGGCAAATGATGCAG
TAAGTAGCATAAGGACAGTGGCCTCATTTTCAGCTGAAGAGAAGGTGATGGATTTGTACA
ACAAAAAGTGCGAAGGACCGCTACAAACAGGAATCAGGACAGGAATAATAAGTGGTATTG
GTTTTGGAGTTTCCTTCTTTTTGCTGTTTGGAGTCTACGGAGCAAGCTTCTATGCTGGTG
CTCGGCTTGTCGAGGATAAGAAAACAACATTTCCCAAAGTTTTCAGGGTATGTCGAATGT
TCATTATGAGTTCTTTACATATCTCAGTATTCAATCATAAGTAAGCACTTACATTTCAAT
GCACACTGATCAATCATACATTGCCACATAAATTCAGACCAGAACGTGCCTAGTATTTTG
ACAACAGTTAAAAGGTCGTGTCTGGTTAATTGTTACTTCGGAGTTACTAAAGATTATTGT
ACCTTTGGCATGTCAAAATGCAGGTGTTTCTTGCTCTTACAATGGCAGCAATCGGGGTAT
CGCACACTAGCACCCTCACTTCAGATTCCTCCAGAGCAAGATCAGCCGTATCTTCTATAT
TCGCCATCGTGGATCGTAAATCGATGATTGACCCAAGTGATGACGCCGGGGTGAATGTAG
AACCACTAAGGGGCGATATCGAGTTTCGGCACGTGAGGTTCAGATACCCGACCCGCCCTG
ACATTCAGATCTTCGAGGACCTATGCTTGACAATCCAGTCAGGAAAGGTACCAACCTCAA
CCCAACCCAGGTTTAACCGATCAGCAAACAATGTACAGGTTTGCCGAACTGAACCTAACT
AACTATCTGCCCCGTGAACCTGCCTCTCAGACTGTCGCGCTTGTCGGGGAGAGCGGCAGC
GGCAAATCGACGGCGATATCACTGCTGCAGAGATTCTACGACCCTGACGCAGGCCACATA
CTTCTGGACGGGGTGGACATCCAGAAGTTCCAGGTGAGGTGGCTGAGGCAGCAGATGGGG
CTGGTGAGCCAAGAGCCGGCCCTCTTCAACGACACGATCCGAGCGAACATTGCCTACGGA
AAGGAAGGGGAGGCCACGGAATCAGACATCGTGTCCGCCGCGCAACTCGCGAATGCCCAC
AAGTTCATCAGCTCACTCCATAAGGTGAGGGATTCATTCTTCCATGCACAGGTCGATGTA
TAGCTGCATTTGATGTCCGTAATATCTCGTCGTGGATTTGTCGATCATACCTGGGATTGC
TTGCAGGGGTACGACACGGTGGTCGGGGAGCGCGGCGCTCAGCTGTCGGGAGGGCAGAAG
CAGCGGGTGGCGATCGCGCGGGCCGTGGCCAAGGACCCCAGGATCCTGCTGCTGGACGAG
GCGACGAGCGCGCTGGACGCGGAGTCGGAGCGGGCGGTGCAGGACGCGCTGGACCGGGTG
GCGGCGAGCCGGACGACGGTGGTGGTGGCGCACCGCCTGTCGACGGTCCGGGGCGCCGAC
GTCATCGCGGTGGTGAAGGACGGGGCGATCGTCGAGAGGGGGACGCACGACGCCCTGATC
GCCGTCAAGGGCGGCGCGTACGCGTCCCTCGTCGCCCTCCACTCCGCGGCGGAGTAGGAG
CGCCGCTCCAAGAGGGGCGCTCTCGCGAAACTGTGCCGAACCCGCGAAGGTGTTGGGGGT
GGAGTGGCACGCACGGTAATTATTACCACGTTCGGTTCAGGTGTCAGCTCGCTGTGAAAA
TGAAACCCTATCCGAATACCTAAGCACGAACGCTTTATATTTCTTACTAGTATTTCTTAT
TATTAGAAAAAGGAACAAGAAAGTTCTATAGGAATAACAATACCCAAATATATCTGCTAT
CAAAAATAATCTTACTCTCTAAAATATCGCCCCTGCTTGATAGCAATAGATTGTAAAAAA
CTAACCGTGACATCTCTGACAAGTAATCATGGTGTTGATGAAACTTTTTCTCATTTCACC
TATTGAAACTAAACAAGGAAAACAAATCTACTGTTTAAGTTGGATGTACATATTAACAAA
CAAATGAAATACTTTCTTCGTTTCATAATATAAAAATGTTTTTGACACTACAGTAATGTC
AAAAAAGTTCAGACTAGTAGTGGAAGGGAAAGAGTGATGTTTATCTATTCACCTACATAA
TAGTTTGATTTTGAGAGTGTTTCTATCTCTAACATGATCAATGATAAAATGTGGTATAGG
TTGTGTCTCAATCAATCCCAGTGTGACTGGTCATCTTCTCGGACCTAATCATCGTTTTGG
CAAGCTATTGCCTTATCATTGATCGCAAAATTTTAGAGAAAAGATAACGTTGTAGGCGTT
TGCAAAACGTCTACATCTGTGGATGTTTGCAAACCGTCTGTTCGCATGGATCTGCGTGCT
TGCATCAATCTTGGTACTTTTTGACTTTTCTTTTGTCATTTAGGAAAGGGCTAGTGCGTG
GGCGTTAAGGAGTTCGTCCACACGTCTGTTTTACGTACGCTCACACGCGGCTTTTAACCC
GACGTATGGTGGAACTGACGCCGCGTCAATACGTCCGCATGCCTGTTAGTTGCCATGTTT
TTCTAGTGTTACATGATAACTTAGTGGAACTGCCATGCCCACATGACTGTCAATTGCCAT
GTCTTCCCATGGACAACTGAGTGAAACTGTCGTGACCGCATGCCTGTCAGTTGCCATGTC
TTTTCATGGACAACTGAATGGAACTGTCGTGACCGCATGTCTGTCAGTTGCCATGTCTTC
CCCATGAACAACTGAATGGAACTGCCGTGCCCGCATGCATGTCAGTTGCCATGTCTTCCC
CATGACAATTTAGTGGAACTGCCATGTCCGAATGCCTGTCAGTTGCCATGTCTTTCCAGT
GTTACATGACAACTGAATGAAACTGGTCGTGTCCGCATGTCCGTCAGTTGCCATGTTTTC
TCAGTGTTACGTGACAACTGAATGGAAGTGACCGGGCCAGCATATGCCTGTCAGTTGTCA
TGTCTTTTCAGTGTTACATGACAACTGAGTGAAACTATCACGTTGAGGCACGCGAGACCG
TGAGGTGGTAGTCCGGATGTGTGGATCGCGAGGCAGGAGGATAAACGTATGGGCGTTAGC
TATTTTGCCCACACACAGACGTGTGGGCTATTTCCCTTACACACCACACGGGACGTGTGG
ACAATACTCTTAACGTCCATACGTATGGGCGTTATGAGGACCCAATTTTCATAGGTAACT
TACTAGGTTGAGTGGTTGTCAGGTATTGCCTTATCAACGAGAAAGGTGTGGCTGCTCCCG
GATAGGTGCGTTCGTATGAACAATACATTTGAAAAGCATAAAAATCTGAATTTTTTGACA
CCAGACTAGATGAAAAGTTTTAGCTTTCTGTAAAATAACATTTCAAGAACCCCAGCAAAA
GAACAAAATCAATGTTGAAAAGTGAACAAAACTTTGAACACTGATTAGTTTTTTTGGGTG
AGCTCTGCTTGAATGTTATTTTGTCTTGAAATTTTGCAAGGCTAACACTTTTGATCCTGT
ATATTTTTTACCTGCACTGTTCATGCGGGTGTACGTGCACCGGAGCAGAAAATCAAGTCT
CCTTAGCAACCAGCTAATTCCACACGAGCCACTCGATAGATGGATTTTTTTTTCTTTTGC
TTCTCAACCTATGGGGTGGGATAATCATGTACTACCTCTGTATTAAAATACTTATAACTG
AAGAAAACTAGTACAAATTCTCCTAAATACAAATATTTCGGTTCAGAGAGAGTACAACTC
TAGTTGCTGCCCTAGCATTGGTTATTGTTGTAGTAGCATCGATTATTGTTTGGGTTAGAA
ATGACTCAATCCATCTCCGGTAACCACGCTTGTTTTTAGTAGATGGAGATGCATACCTAG
AGAAGACAGATGAACCTTCTAGCATAAATCTAATTCGTCTCTTGGAACATACTCCCGCCC
ATTTCTTTTCACAAATGTCAAAAAGATAGAATCTTTTAAAATGTATTCACTGTCACACTG
AAATGGTATTTGCAAAATTTTAGTGAAAAAGGCTTAAGCATTTTGGTTTGTGCAAGAAAA
ACAAATCGAATGCCAAATATTACCTCCATATGTTACATTTTTTTTTCATCGACGAAGTAC
AACTATCCTTCTCCGCATGCAAATTATCAAACCCTCTTGTTAAACTAACATAAATATCCA
AAAAATAAGTTCTAAAATTTACCCCCTTCGTCGGAAAAGAAGTGGCACCGAGTTCGTACA
ATTTTAATGCAAAATTGTACCAAATCACGGACCCTTTTAATGCAAAATTGTACCAAATCA
CGGACCCTTACTTTGACACGCAGAGAGTATTTAGTACGTATTTATTTCAAATTTACTATT
CATCAAGCAGTATACGTTGTCTAGAACCAAAACCGCCTTCCCTACAAGTTTTCATTTTTG
TGATTGGATGGTTAGTTGGATAGTGTTATTCCCATCCTACGAGAGTTAAAGTCTTAAAAT
TGGTCTTCGCATTTTTCTAAATTTATTTTAAACTTTTCGATGACGAACGTGCGTTCAATG
AGTGAAGACGTTCTCGTCGACTATGAAGACATCTTTATCGACTTCATCAATCTTTAAGAA
GGCGTTTGGTTATCTGCATTGTTTTTTAACACTTTGCATACTTGTCCCACCTCAGCCTCG
TTGAGCTATTGCAGACAAAAAAACCCATCATATGTATTTAGTTTGCTCGCGTGCATATAG
GTTGTCTGCAATAAGGGAGGATTTTTTGCCTGCCCTCTGGTTGCGTGCATTGGCTTGGCA
GATGGAAGTGCCTGGTGTTTGGCTGCATGCATGCAACGTGATTAAGAGTTAACACCTATA
CATGATACACAAGATTATAGTAGAGTTTTTGGCTAGCAGCAGCAGCACGAGACGACGGAG
TACGACGGGCTGACGGTGGGTAGACGGGGTGGCCATCGCCTTCTTTCACTACTCCTTCGG
TCTTTGTCGCGGGCAGCCGATGCACCTCTGCCCCGAGGAATGTGGCGACCACCAGCACGA
CGTCACCGTCATCTCCCCGAGTCAACATGTCGCCAACCACCTGCCCGTTGTTAGACTCTA
TATACGTAGCCCTCTATGCATATACTGTATATTGTATTGTACCCCTTGGGTACCCTTATA
TAATGAGATAGCCACACCCCGTTTAGGGTGTCGAGCACTTCCTAAAACAT